Wall clock time and date at job start Tue Mar 31 2020 07:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.62240 * 2 1 4 4 C 1.53234 * 109.63309 * 239.61525 * 2 1 3 5 5 N 1.46901 * 109.34006 * 186.26311 * 4 2 1 6 6 C 1.46905 * 110.99852 * 187.25004 * 5 4 2 7 7 C 1.46905 * 111.27065 * 63.10493 * 5 4 2 8 8 H 1.08997 * 109.49215 * 176.93770 * 7 5 4 9 9 C 1.52999 * 109.49307 * 56.85100 * 7 5 4 10 10 C 1.53240 * 109.33607 * 296.89589 * 7 5 4 11 11 H 1.08999 * 109.62945 * 294.11740 * 10 7 5 12 12 C 1.52999 * 109.78807 * 173.63393 * 10 7 5 13 13 N 1.47074 * 108.52339 * 53.82743 * 10 7 5 14 14 C 1.34778 * 120.88015 * 128.79260 * 13 10 7 15 15 O 1.21286 * 120.00354 * 346.37918 * 14 13 10 16 16 C 1.50698 * 120.00069 * 166.38159 * 14 13 10 17 17 S 1.81000 * 109.47306 * 188.04562 * 16 14 13 18 18 C 1.76207 * 100.00337 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99594 * 359.97438 * 18 17 16 20 20 C 1.38789 * 119.99883 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00639 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99737 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47053 * 90.00070 * 22 20 18 24 24 H 1.48497 * 109.47252 * 210.00210 * 22 20 18 25 25 H 1.48503 * 109.47281 * 330.00338 * 22 20 18 26 26 H 1.09003 * 109.46972 * 185.70825 * 1 2 3 27 27 H 1.08992 * 109.47843 * 305.70884 * 1 2 3 28 28 H 1.08999 * 109.47424 * 65.71678 * 1 2 3 29 29 H 1.08996 * 109.49669 * 66.30272 * 4 2 1 30 30 H 1.09004 * 109.49320 * 306.22308 * 4 2 1 31 31 H 1.08999 * 109.46876 * 56.05201 * 6 5 4 32 32 H 1.09000 * 109.46724 * 176.04577 * 6 5 4 33 33 H 1.08992 * 109.47460 * 296.04597 * 6 5 4 34 34 H 1.08999 * 109.46956 * 60.00419 * 9 7 5 35 35 H 1.08997 * 109.47030 * 180.02562 * 9 7 5 36 36 H 1.09004 * 109.47196 * 300.00620 * 9 7 5 37 37 H 1.08999 * 109.47057 * 297.40720 * 12 10 7 38 38 H 1.08997 * 109.47297 * 57.40409 * 12 10 7 39 39 H 1.08999 * 109.47450 * 177.40461 * 12 10 7 40 40 H 1.09001 * 109.47365 * 308.04286 * 16 14 13 41 41 H 1.09004 * 109.47556 * 68.04489 * 16 14 13 42 42 H 0.97001 * 120.00467 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0448 -0.7300 -1.2450 5 7 3.5060 -0.8581 -1.1644 6 6 4.0569 -1.3976 -2.4148 7 6 3.9064 -1.6804 -0.0148 8 1 4.9896 -1.8013 -0.0138 9 6 3.2387 -3.0535 -0.1121 10 6 3.4677 -0.9892 1.2806 11 1 4.0201 -0.0576 1.4038 12 6 3.7366 -1.9077 2.4744 13 7 2.0280 -0.7020 1.1926 14 6 1.1872 -1.0728 2.1786 15 8 1.5558 -1.8570 3.0272 16 6 -0.2112 -0.5131 2.2265 17 16 -1.0057 -1.0063 3.7762 18 6 -2.5784 -0.2383 3.5718 19 1 -2.7905 0.3281 2.6771 20 6 -3.5445 -0.3613 4.5607 21 7 -3.2859 -1.0512 5.6514 22 14 -5.2114 0.4536 4.3443 23 1 -6.1390 -0.4888 3.6683 24 1 -5.7601 0.8192 5.6749 25 1 -5.0604 1.6780 3.5177 26 1 -0.3633 -1.0226 0.1022 27 1 -0.3634 0.5997 0.8344 28 1 -0.3634 0.4226 -0.9367 29 1 1.7781 -0.1619 -2.1362 30 1 1.5951 -1.7216 -1.2973 31 1 3.7505 -0.7665 -3.2490 32 1 5.1451 -1.4164 -2.3541 33 1 3.6841 -2.4101 -2.5691 34 1 3.5490 -3.5438 -1.0348 35 1 3.5356 -3.6632 0.7412 36 1 2.1555 -2.9317 -0.1120 37 1 3.1411 -2.8152 2.3759 38 1 4.7946 -2.1685 2.5011 39 1 3.4658 -1.3936 3.3966 40 1 -0.1694 0.5746 2.1699 41 1 -0.7862 -0.8989 1.3846 42 1 -3.9612 -1.1375 6.3423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593187127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:24 Heat of formation + Delta-G solvation = 17.845447 kcal Electronic energy + Delta-G solvation = -22051.698280 eV Core-core repulsion = 18967.101727 eV Total energy + Delta-G solvation = -3084.596554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07137 -39.32267 -36.75587 -35.25576 -34.55702 -31.78920 -30.81541 -29.39084 -27.75098 -27.35215 -26.47364 -24.01202 -22.72178 -21.74526 -19.93372 -19.33852 -17.78785 -17.41097 -17.00127 -16.85708 -16.42270 -16.21793 -15.72698 -15.42082 -15.27404 -14.97773 -14.47447 -14.39903 -14.02066 -13.64422 -13.37767 -13.24706 -13.06769 -12.92519 -12.90218 -12.72875 -12.64054 -12.53294 -12.41245 -12.11426 -11.96109 -11.90825 -11.60596 -11.34221 -11.09269 -10.14846 -9.92519 -9.69210 -9.18499 -8.60839 -8.31683 -6.09063 1.28254 1.42956 1.46992 1.56042 1.65392 2.09520 2.30682 2.88407 3.02198 3.27581 3.57515 3.73324 3.83694 3.96803 4.01653 4.11404 4.23195 4.28546 4.36779 4.37242 4.49376 4.55192 4.63263 4.66355 4.69280 4.74605 4.79220 4.88777 4.95759 5.03106 5.08121 5.13825 5.18100 5.26535 5.42412 5.44047 5.70666 6.02847 6.05196 6.22373 6.41572 7.09431 7.23359 8.77442 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.004395 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.416165 B = 6369.729318 C = 7012.424557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.145 3.855 3 H 0.093 0.907 4 C 0.045 3.955 5 N -0.541 5.541 6 C 0.023 3.977 7 C 0.077 3.923 8 H 0.110 0.890 9 C -0.178 4.178 10 C 0.153 3.847 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.607 5.607 14 C 0.534 3.466 15 O -0.548 6.548 16 C -0.145 4.145 17 S -0.178 6.178 18 C -0.538 4.538 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.913 5.913 22 Si 0.997 3.003 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.256 1.256 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 2.390 -19.196 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.043 3.957 3 H 0.111 0.889 4 C -0.084 4.084 5 N -0.264 5.264 6 C -0.124 4.124 7 C -0.032 4.032 8 H 0.128 0.872 9 C -0.237 4.237 10 C 0.050 3.950 11 H 0.102 0.898 12 C -0.190 4.190 13 N -0.343 5.343 14 C 0.321 3.679 15 O -0.426 6.426 16 C -0.295 4.295 17 S 0.050 5.950 18 C -0.686 4.686 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.818 3.182 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.180 1.180 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.127 0.873 41 H 0.155 0.845 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.608 1.761 -17.668 22.992 hybrid contribution -1.841 0.073 -0.588 1.935 sum 12.766 1.834 -18.257 22.353 Atomic orbital electron populations 1.23390 0.93863 1.02619 1.05641 1.21428 0.94422 0.96706 0.83193 0.88873 1.22589 0.87911 0.99768 0.98090 1.62187 1.10318 1.50056 1.03822 1.22448 1.00917 0.98257 0.90777 1.22074 1.00801 0.90457 0.89876 0.87191 1.22365 1.00580 0.98336 1.02396 1.21433 0.79612 0.98720 0.95254 0.89831 1.22092 1.00525 1.00060 0.96300 1.48295 1.07536 1.58795 1.19666 1.20102 0.86443 0.80472 0.80836 1.90730 1.76454 1.34182 1.41193 1.25341 0.96914 1.03994 1.03217 1.85560 1.14501 1.71037 1.23939 1.23141 0.99235 1.37976 1.08223 0.89904 1.26107 1.03384 0.95727 0.93926 1.70199 1.36161 1.40091 1.08476 0.84981 0.76506 0.78761 0.77904 1.19366 1.20501 1.18021 0.92363 0.89357 0.88267 0.87238 0.94608 0.90054 0.90279 0.95409 0.91269 0.92217 0.94265 0.92454 0.91245 0.94041 0.87279 0.84511 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.34 7.11 71.98 0.51 -3.83 16 2 C 0.15 3.12 3.62 44.96 0.16 3.28 16 3 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.05 0.79 4.54 86.38 0.39 1.18 16 5 N -0.54 -9.16 4.83 -896.09 -4.33 -13.48 16 6 C 0.02 0.29 9.33 127.69 1.19 1.48 16 7 C 0.08 1.49 2.54 44.99 0.11 1.61 16 8 H 0.11 1.74 8.11 -2.39 -0.02 1.72 16 9 C -0.18 -3.83 7.87 71.98 0.57 -3.27 16 10 C 0.15 3.81 3.35 44.96 0.15 3.96 16 11 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 12 C -0.13 -3.84 7.01 71.98 0.50 -3.33 16 13 N -0.61 -17.28 2.48 -770.45 -1.91 -19.19 16 14 C 0.53 20.44 7.29 87.66 0.64 21.08 16 15 O -0.55 -25.08 11.48 -3.05 -0.04 -25.11 16 16 C -0.15 -5.86 3.74 71.24 0.27 -5.60 16 17 S -0.18 -9.98 20.59 -56.49 -1.16 -11.14 16 18 C -0.54 -30.75 9.50 67.95 0.65 -30.11 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.60 13.22 21.65 0.29 -56.32 16 22 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 H 0.06 1.49 6.03 -2.39 -0.01 1.48 16 27 H 0.09 2.29 4.19 -3.52 -0.01 2.27 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.11 1.40 8.07 -2.39 -0.02 1.38 16 30 H 0.04 0.72 6.10 -2.39 -0.01 0.71 16 31 H 0.08 0.79 8.08 -2.39 -0.02 0.78 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.03 0.35 6.53 -2.39 -0.02 0.34 16 34 H 0.07 1.23 6.60 -2.39 -0.02 1.21 16 35 H 0.06 1.40 6.43 -2.39 -0.02 1.38 16 36 H 0.04 1.03 5.93 -2.39 -0.01 1.01 16 37 H 0.06 1.94 5.12 -2.39 -0.01 1.93 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 40 H 0.11 4.07 6.29 -2.39 -0.02 4.05 16 41 H 0.14 5.05 4.43 -2.39 -0.01 5.04 16 42 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -73.59 320.45 1.51 -72.08 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.01 Total: 19.79 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.61 Total: -12.35 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -5.95 Total: -88.99 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.04 Total: -25.11 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -9.98 SS G_CDS: -1.16 Total: -11.14 kcal Total: -73.59 1.51 -72.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593187127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.930 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds