Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47006 * 2 1 4 4 H 1.09004 * 109.46764 * 54.42409 * 3 2 1 5 5 S 1.81404 * 109.47287 * 294.42503 * 3 2 1 6 6 C 1.81400 * 102.99904 * 172.83435 * 5 3 2 7 7 C 1.50697 * 109.47272 * 174.42218 * 3 2 1 8 8 O 1.21278 * 120.00171 * 100.00411 * 7 3 2 9 9 N 1.34779 * 119.99594 * 280.00262 * 7 3 2 10 10 C 1.46505 * 119.99642 * 179.97438 * 9 7 3 11 11 C 1.52994 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.53782 * 113.61625 * 274.13899 * 11 10 9 13 13 C 1.53959 * 87.01866 * 220.04662 * 12 11 10 14 14 N 1.46497 * 113.53777 * 270.80865 * 13 12 11 15 15 C 1.36939 * 120.00377 * 252.49510 * 14 13 12 16 16 H 1.07999 * 119.99663 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00329 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47045 * 60.00033 * 19 17 15 21 21 H 1.48503 * 109.46949 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47043 * 299.99848 * 19 17 15 23 23 C 1.53781 * 87.11164 * 25.36418 * 13 12 11 24 24 H 1.08998 * 109.47470 * 55.27744 * 1 2 3 25 25 H 1.08999 * 109.46935 * 175.28239 * 1 2 3 26 26 H 1.08998 * 109.46841 * 295.27673 * 1 2 3 27 27 H 1.09004 * 109.46994 * 240.01006 * 2 1 3 28 28 H 1.08995 * 109.47589 * 120.00434 * 2 1 3 29 29 H 1.08997 * 109.46989 * 55.08393 * 6 5 3 30 30 H 1.09007 * 109.47129 * 295.08638 * 6 5 3 31 31 H 1.08993 * 109.47115 * 175.08360 * 6 5 3 32 32 H 0.96997 * 120.00270 * 0.02562 * 9 7 3 33 33 H 1.08994 * 109.47496 * 300.00453 * 10 9 7 34 34 H 1.09002 * 109.46984 * 60.00365 * 10 9 7 35 35 H 1.09000 * 112.85217 * 45.33497 * 11 10 9 36 36 H 1.08992 * 113.61633 * 334.56978 * 12 11 10 37 37 H 1.09001 * 113.61024 * 105.47318 * 12 11 10 38 38 H 1.09002 * 113.73850 * 139.94449 * 13 12 11 39 39 H 0.97005 * 120.00222 * 72.49851 * 14 13 12 40 40 H 0.96994 * 120.00259 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.60963 * 220.09250 * 23 13 12 42 42 H 1.08991 * 113.61369 * 89.18573 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9843 0.8359 5 16 1.5748 2.2484 -1.5572 6 6 2.0599 3.9749 -1.2840 7 6 3.5406 1.4448 0.1381 8 8 4.2395 1.5946 -0.8417 9 7 4.1060 1.2805 1.3505 10 6 5.5648 1.2822 1.4847 11 6 5.9421 1.0793 2.9534 12 6 5.9758 2.3841 3.7667 13 6 7.2346 1.8273 4.4564 14 7 6.9435 1.0317 5.6515 15 6 7.2202 1.5362 6.8942 16 1 7.6527 2.5208 6.9931 17 6 6.9448 0.7820 8.0265 18 7 6.4173 -0.4178 7.9059 19 14 7.3217 1.4706 9.7216 20 1 6.5522 2.7236 9.9292 21 1 6.9383 0.4765 10.7561 22 1 8.7746 1.7587 9.8271 23 6 7.4582 0.9809 3.1921 24 1 -0.3634 0.5853 -0.8446 25 1 -0.3633 -1.0242 -0.0845 26 1 -0.3633 0.4388 0.9293 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.1126 4.0165 -1.0045 30 1 1.4543 4.4001 -0.4836 31 1 1.9043 4.5452 -2.1997 32 1 3.5470 1.1603 2.1340 33 1 5.9857 0.4744 0.8861 34 1 5.9606 2.2364 1.1368 35 1 5.3723 0.2820 3.4306 36 1 6.1652 3.2708 3.1619 37 1 5.1251 2.5021 4.4380 38 1 8.0100 2.5749 4.6241 39 1 6.5547 0.1474 5.5627 40 1 6.2252 -0.9449 8.6972 41 1 7.8025 -0.0322 3.4002 42 1 8.0536 1.4833 2.4300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100247801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -18.711183 kcal Electronic energy + Delta-G solvation = -20373.717964 eV Core-core repulsion = 17287.536196 eV Total energy + Delta-G solvation = -3086.181768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95817 -38.56184 -34.98586 -34.67811 -33.20748 -30.31053 -29.40756 -28.52808 -26.71742 -25.11498 -23.74386 -22.45659 -21.74434 -20.64525 -18.49677 -17.56073 -17.15485 -16.90944 -15.79979 -15.44107 -15.21297 -14.89121 -14.46907 -14.25271 -13.89454 -13.72227 -13.65505 -13.37531 -12.93772 -12.90549 -12.44184 -12.34374 -12.23651 -11.97607 -11.53809 -11.41866 -11.32353 -11.08901 -10.86760 -10.54805 -10.26171 -10.24902 -10.15328 -9.81302 -9.73671 -9.50620 -9.07162 -8.92578 -7.80243 -7.05169 -5.85161 -3.14516 1.32862 2.19243 2.51710 3.12771 3.39172 3.43890 3.44669 4.42192 4.43035 4.51708 4.67117 4.92944 4.97289 4.97798 5.00143 5.01706 5.11796 5.18620 5.38909 5.40576 5.52844 5.56102 5.64178 5.65279 5.74899 5.81446 5.89648 5.97945 6.05168 6.15458 6.31703 6.34127 6.53280 6.68266 6.84012 6.98503 7.38701 7.64164 8.08651 8.34012 9.44645 10.01759 10.35964 11.37169 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.002942 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.333411 B = 9516.355027 C = 9924.096444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.098 4.098 3 C -0.087 4.087 4 H 0.107 0.893 5 S -0.199 6.199 6 C -0.130 4.130 7 C 0.506 3.494 8 O -0.523 6.523 9 N -0.719 5.719 10 C 0.131 3.869 11 C -0.119 4.119 12 C -0.169 4.169 13 C 0.168 3.832 14 N -0.706 5.706 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.148 4.148 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.403 0.597 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.385 0.615 40 H 0.257 0.743 41 H 0.069 0.931 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 4.073 -16.633 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.219 4.219 4 H 0.125 0.875 5 S 0.028 5.972 6 C -0.299 4.299 7 C 0.288 3.712 8 O -0.398 6.398 9 N -0.371 5.371 10 C 0.008 3.992 11 C -0.138 4.138 12 C -0.210 4.210 13 C 0.055 3.945 14 N -0.344 5.344 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.188 4.188 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.237 0.763 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.219 0.781 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.461 3.832 -18.060 21.220 hybrid contribution 0.326 0.565 2.437 2.522 sum -10.135 4.397 -15.624 19.135 Atomic orbital electron populations 1.21859 0.94014 1.02428 1.02883 1.21289 0.97365 0.91265 1.03800 1.23634 0.95643 1.02312 1.00310 0.87507 1.86596 1.79886 1.06976 1.23772 1.23459 1.04937 0.95480 1.05995 1.20483 0.90004 0.77090 0.83603 1.90744 1.63464 1.48311 1.37292 1.46045 1.08614 1.73413 1.08985 1.21505 0.78785 1.01674 0.97225 1.22711 0.98310 1.00158 0.92641 1.23917 1.02851 0.95084 0.99129 1.21086 0.94115 0.93103 0.86167 1.42166 1.74148 1.17947 1.00159 1.19246 1.34870 0.99971 0.83453 0.91042 1.24762 1.01557 0.96493 0.97966 1.69646 1.48981 1.10713 1.28730 0.86244 0.78047 0.77782 0.83966 1.21197 1.21648 1.21169 1.23443 0.94000 1.01739 0.99571 0.91204 0.92040 0.92316 0.90409 0.90015 0.90150 0.90595 0.88008 0.76313 0.91738 0.91624 0.88874 0.91490 0.91526 0.91942 0.78110 0.93349 0.91265 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.82 37.16 0.36 -0.76 16 2 C -0.10 -0.85 5.38 -26.73 -0.14 -1.00 16 3 C -0.09 -0.86 2.60 -27.88 -0.07 -0.93 16 4 H 0.11 0.88 8.14 -51.92 -0.42 0.45 16 5 S -0.20 -2.15 19.79 -107.50 -2.13 -4.28 16 6 C -0.13 -1.18 10.61 101.05 1.07 -0.11 16 7 C 0.51 6.36 6.66 -10.99 -0.07 6.28 16 8 O -0.52 -8.46 15.86 5.56 0.09 -8.37 16 9 N -0.72 -8.32 5.56 -60.30 -0.34 -8.65 16 10 C 0.13 1.70 5.50 -4.04 -0.02 1.67 16 11 C -0.12 -1.71 3.62 -89.81 -0.33 -2.04 16 12 C -0.17 -2.70 7.44 -25.82 -0.19 -2.89 16 13 C 0.17 3.19 4.57 -67.03 -0.31 2.88 16 14 N -0.71 -17.04 5.31 -52.55 -0.28 -17.32 16 15 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.15 -2.30 7.39 -25.92 -0.19 -2.50 16 24 H 0.07 0.55 7.01 -51.93 -0.36 0.18 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.85 7.77 -51.93 -0.40 0.44 16 30 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.38 9.81 7.90 -40.82 -0.32 9.49 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -30.97 358.35 -8.98 -39.95 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -7.29 Total: 9.68 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -0.14 Total: -6.57 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.11 Total: -52.67 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.13 Total: -4.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.97 -8.98 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100247801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.240 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds