Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47006 * 2 1 4 4 H 1.09004 * 109.46764 * 54.42409 * 3 2 1 5 5 S 1.81404 * 109.47287 * 294.42503 * 3 2 1 6 6 C 1.81400 * 102.99904 * 172.83435 * 5 3 2 7 7 C 1.50697 * 109.47272 * 174.42218 * 3 2 1 8 8 O 1.21278 * 120.00171 * 100.00411 * 7 3 2 9 9 N 1.34779 * 119.99594 * 280.00262 * 7 3 2 10 10 C 1.46505 * 119.99642 * 179.97438 * 9 7 3 11 11 C 1.52994 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.53782 * 113.61625 * 274.13899 * 11 10 9 13 13 C 1.53959 * 87.01866 * 220.04662 * 12 11 10 14 14 N 1.46497 * 113.53777 * 270.80865 * 13 12 11 15 15 C 1.36939 * 120.00377 * 252.49510 * 14 13 12 16 16 H 1.07999 * 119.99663 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00329 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47045 * 60.00033 * 19 17 15 21 21 H 1.48503 * 109.46949 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47043 * 299.99848 * 19 17 15 23 23 C 1.53781 * 87.11164 * 25.36418 * 13 12 11 24 24 H 1.08998 * 109.47470 * 55.27744 * 1 2 3 25 25 H 1.08999 * 109.46935 * 175.28239 * 1 2 3 26 26 H 1.08998 * 109.46841 * 295.27673 * 1 2 3 27 27 H 1.09004 * 109.46994 * 240.01006 * 2 1 3 28 28 H 1.08995 * 109.47589 * 120.00434 * 2 1 3 29 29 H 1.08997 * 109.46989 * 55.08393 * 6 5 3 30 30 H 1.09007 * 109.47129 * 295.08638 * 6 5 3 31 31 H 1.08993 * 109.47115 * 175.08360 * 6 5 3 32 32 H 0.96997 * 120.00270 * 0.02562 * 9 7 3 33 33 H 1.08994 * 109.47496 * 300.00453 * 10 9 7 34 34 H 1.09002 * 109.46984 * 60.00365 * 10 9 7 35 35 H 1.09000 * 112.85217 * 45.33497 * 11 10 9 36 36 H 1.08992 * 113.61633 * 334.56978 * 12 11 10 37 37 H 1.09001 * 113.61024 * 105.47318 * 12 11 10 38 38 H 1.09002 * 113.73850 * 139.94449 * 13 12 11 39 39 H 0.97005 * 120.00222 * 72.49851 * 14 13 12 40 40 H 0.96994 * 120.00259 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.60963 * 220.09250 * 23 13 12 42 42 H 1.08991 * 113.61369 * 89.18573 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9843 0.8359 5 16 1.5748 2.2484 -1.5572 6 6 2.0599 3.9749 -1.2840 7 6 3.5406 1.4448 0.1381 8 8 4.2395 1.5946 -0.8417 9 7 4.1060 1.2805 1.3505 10 6 5.5648 1.2822 1.4847 11 6 5.9421 1.0793 2.9534 12 6 5.9758 2.3841 3.7667 13 6 7.2346 1.8273 4.4564 14 7 6.9435 1.0317 5.6515 15 6 7.2202 1.5362 6.8942 16 1 7.6527 2.5208 6.9931 17 6 6.9448 0.7820 8.0265 18 7 6.4173 -0.4178 7.9059 19 14 7.3217 1.4706 9.7216 20 1 6.5522 2.7236 9.9292 21 1 6.9383 0.4765 10.7561 22 1 8.7746 1.7587 9.8271 23 6 7.4582 0.9809 3.1921 24 1 -0.3634 0.5853 -0.8446 25 1 -0.3633 -1.0242 -0.0845 26 1 -0.3633 0.4388 0.9293 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.1126 4.0165 -1.0045 30 1 1.4543 4.4001 -0.4836 31 1 1.9043 4.5452 -2.1997 32 1 3.5470 1.1603 2.1340 33 1 5.9857 0.4744 0.8861 34 1 5.9606 2.2364 1.1368 35 1 5.3723 0.2820 3.4306 36 1 6.1652 3.2708 3.1619 37 1 5.1251 2.5021 4.4380 38 1 8.0100 2.5749 4.6241 39 1 6.5547 0.1474 5.5627 40 1 6.2252 -0.9449 8.6972 41 1 7.8025 -0.0322 3.4002 42 1 8.0536 1.4833 2.4300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100247801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -38.236426 kcal Electronic energy + Delta-G solvation = -20374.564642 eV Core-core repulsion = 17287.536196 eV Total energy + Delta-G solvation = -3087.028446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02589 -39.89271 -36.03400 -35.74017 -34.88435 -32.09191 -30.24378 -29.43771 -27.83550 -26.45023 -25.63495 -23.35217 -22.91386 -21.63042 -19.87724 -19.34942 -18.26803 -17.88954 -16.82561 -16.61257 -16.41791 -16.03613 -15.75753 -15.68077 -15.06711 -14.87792 -14.65834 -14.42117 -14.31644 -13.86138 -13.60711 -13.30252 -13.13346 -12.98836 -12.92370 -12.91365 -12.62596 -12.20610 -12.16936 -12.08238 -12.00241 -11.55839 -11.48674 -11.06812 -11.03642 -10.88145 -10.70392 -10.11330 -9.00379 -8.62663 -7.95637 -5.23990 0.54873 1.38568 1.48246 1.50395 1.56539 1.58590 2.18680 2.55689 3.36784 3.54005 3.69382 3.71801 3.78307 3.87721 3.96094 4.14266 4.26371 4.29134 4.31261 4.34083 4.38947 4.45984 4.70765 4.74721 4.76743 4.83625 4.91573 4.98006 5.06478 5.10482 5.13184 5.25913 5.33840 5.40720 5.46600 5.53343 5.65206 6.27988 6.44217 7.12500 7.33198 8.10186 8.32502 9.27358 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.002942 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.333411 B = 9516.355027 C = 9924.096444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.077 4.077 4 H 0.129 0.871 5 S -0.233 6.233 6 C -0.123 4.123 7 C 0.507 3.493 8 O -0.561 6.561 9 N -0.712 5.712 10 C 0.141 3.859 11 C -0.101 4.101 12 C -0.152 4.152 13 C 0.143 3.857 14 N -0.720 5.720 15 C -0.245 4.245 16 H 0.076 0.924 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.972 3.028 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.279 1.279 23 C -0.136 4.136 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.412 0.588 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.057 0.943 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 5.170 -16.957 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C -0.209 4.209 4 H 0.147 0.853 5 S -0.006 6.006 6 C -0.291 4.291 7 C 0.290 3.710 8 O -0.440 6.440 9 N -0.363 5.363 10 C 0.017 3.983 11 C -0.120 4.120 12 C -0.193 4.193 13 C 0.033 3.967 14 N -0.358 5.358 15 C -0.377 4.377 16 H 0.094 0.906 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.205 1.205 23 C -0.175 4.175 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.249 0.751 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.009 4.969 -18.407 22.016 hybrid contribution 0.538 0.274 2.461 2.534 sum -10.471 5.243 -15.946 19.784 Atomic orbital electron populations 1.21822 0.92797 1.02945 1.03139 1.21315 0.98363 0.90346 1.03537 1.23643 0.93632 1.03259 1.00405 0.85340 1.86724 1.79807 1.08841 1.25208 1.23481 1.04090 0.94232 1.07304 1.20896 0.90983 0.76028 0.83048 1.90730 1.64588 1.50145 1.38516 1.45969 1.08241 1.72833 1.09298 1.21306 0.79620 1.01643 0.95688 1.22482 0.97358 0.98803 0.93320 1.23726 1.00189 0.96663 0.98702 1.21420 0.95637 0.93698 0.85916 1.42293 1.74490 1.18068 1.00956 1.19631 1.33319 0.99906 0.84802 0.90627 1.25529 1.02522 0.97030 1.01463 1.69795 1.50929 1.12021 1.29127 0.85242 0.78005 0.77066 0.79631 1.20360 1.22250 1.20529 1.23352 0.95292 1.00704 0.98148 0.91833 0.91280 0.91279 0.91849 0.89077 0.91727 0.88814 0.86805 0.75147 0.91968 0.91484 0.89897 0.89156 0.93190 0.92305 0.79315 0.93983 0.92384 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.82 71.98 0.71 -1.21 16 2 C -0.10 -1.53 5.38 30.60 0.16 -1.37 16 3 C -0.08 -1.40 2.60 29.85 0.08 -1.32 16 4 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 5 S -0.23 -4.77 19.79 -56.49 -1.12 -5.89 16 6 C -0.12 -2.04 10.61 113.37 1.20 -0.83 16 7 C 0.51 12.00 6.66 87.66 0.58 12.58 16 8 O -0.56 -17.71 15.86 -3.02 -0.05 -17.76 16 9 N -0.71 -15.11 5.56 -463.07 -2.57 -17.69 16 10 C 0.14 3.36 5.50 86.38 0.47 3.83 16 11 C -0.10 -2.72 3.62 -10.27 -0.04 -2.76 16 12 C -0.15 -4.60 7.44 31.18 0.23 -4.37 16 13 C 0.14 5.31 4.57 45.58 0.21 5.51 16 14 N -0.72 -34.84 5.31 -320.17 -1.70 -36.54 16 15 C -0.24 -13.23 9.97 84.03 0.84 -12.40 16 16 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 17 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 18 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 19 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 C -0.14 -4.01 7.39 31.12 0.23 -3.78 16 24 H 0.06 0.91 7.01 -2.39 -0.02 0.89 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.29 7.77 -2.39 -0.02 1.27 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.41 7.26 8.47 -92.71 -0.79 6.47 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.63 7.87 -2.39 -0.02 1.61 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.09 2.34 7.92 -2.39 -0.02 2.32 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 39 H 0.37 19.39 7.90 -92.70 -0.73 18.66 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.10 2.54 8.10 -2.39 -0.02 2.52 16 Total: -1.00 -66.58 358.35 1.50 -65.08 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -0.52 Total: 32.90 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.15 Total: -9.73 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -3.99 Total: -111.68 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.05 Total: -17.76 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: -4.77 SS G_CDS: -1.12 Total: -5.89 kcal Total: -66.58 1.50 -65.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100247801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.843 kcal (2) G-P(sol) polarization free energy of solvation -66.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds