Wall clock time and date at job start Tue Mar 31 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46832 * 2 1 4 4 S 1.81394 * 109.46960 * 179.97438 * 3 2 1 5 5 C 1.81408 * 102.99810 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46846 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00072 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.46925 * 120.62933 * 0.02562 * 8 6 5 10 10 C 1.53191 * 108.77562 * 233.58346 * 9 8 6 11 11 C 1.53040 * 109.31327 * 305.36286 * 10 9 8 12 12 C 1.53044 * 109.53609 * 61.36519 * 11 10 9 13 13 H 1.09004 * 109.49706 * 58.61864 * 12 11 10 14 14 N 1.46501 * 109.50112 * 178.68200 * 12 11 10 15 15 C 1.36932 * 120.00234 * 205.00362 * 14 12 11 16 16 H 1.08006 * 120.00212 * 359.97438 * 15 14 12 17 17 C 1.38810 * 120.00174 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00270 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99763 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47122 * 90.00527 * 19 17 15 21 21 H 1.48507 * 109.47091 * 210.00439 * 19 17 15 22 22 H 1.48506 * 109.47254 * 330.00212 * 19 17 15 23 23 C 1.46927 * 120.63015 * 179.72067 * 8 6 5 24 24 H 1.08997 * 109.47379 * 60.00054 * 1 2 3 25 25 H 1.09006 * 109.47079 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47577 * 299.99607 * 1 2 3 27 27 H 1.09002 * 109.46921 * 240.00614 * 2 1 3 28 28 H 1.08997 * 109.47379 * 119.99945 * 2 1 3 29 29 H 1.09005 * 109.46565 * 60.00151 * 3 2 1 30 30 H 1.08997 * 109.47094 * 300.00120 * 3 2 1 31 31 H 1.09000 * 109.46602 * 60.00357 * 5 4 3 32 32 H 1.09000 * 109.47286 * 300.00088 * 5 4 3 33 33 H 1.08999 * 109.59121 * 353.37387 * 9 8 6 34 34 H 1.08998 * 109.58763 * 113.79424 * 9 8 6 35 35 H 1.08998 * 109.50092 * 65.31633 * 10 9 8 36 36 H 1.09004 * 109.49944 * 185.38496 * 10 9 8 37 37 H 1.08996 * 109.46139 * 181.38324 * 11 10 9 38 38 H 1.09002 * 109.46109 * 301.36412 * 11 10 9 39 39 H 0.97001 * 119.99354 * 24.99732 * 14 12 11 40 40 H 0.96999 * 120.00025 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.58071 * 246.20340 * 23 8 6 42 42 H 1.08995 * 109.58576 * 6.62794 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8538 1.4426 0.0008 5 6 4.2618 3.2102 0.0015 6 6 5.7593 3.3801 0.0015 7 8 6.4802 2.4048 0.0006 8 7 6.2973 4.6158 0.0015 9 6 5.4369 5.8068 0.0020 10 6 5.8457 6.7108 -1.1652 11 6 7.3421 7.0165 -1.0687 12 6 8.1381 5.7129 -1.1656 13 1 7.9091 5.2161 -2.1085 14 7 9.5715 6.0094 -1.1047 15 6 10.4740 5.1443 -1.6634 16 1 10.1291 4.2431 -2.1487 17 6 11.8321 5.4250 -1.6052 18 7 12.6997 4.5932 -2.1418 19 14 12.4286 6.9833 -0.7654 20 1 12.6773 6.7067 0.6722 21 1 13.6878 7.4403 -1.4066 22 1 11.3951 8.0419 -0.8943 23 6 7.7552 4.7975 0.0077 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6765 1.9563 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 3.8425 3.6794 0.8915 32 1 3.8432 3.6801 -0.8885 33 1 4.3960 5.5058 -0.1162 34 1 5.5591 6.3455 0.9416 35 1 5.6379 6.2044 -2.1078 36 1 5.2802 7.6416 -1.1199 37 1 7.6307 7.6796 -1.8842 38 1 7.5531 7.5005 -0.1150 39 1 9.8811 6.8187 -0.6687 40 1 13.6487 4.7896 -2.1015 41 1 8.0623 5.2558 0.9479 42 1 8.2445 3.8303 -0.1067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207549303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:04 Heat of formation + Delta-G solvation = -31.419242 kcal Electronic energy + Delta-G solvation = -20506.337317 eV Core-core repulsion = 17419.604486 eV Total energy + Delta-G solvation = -3086.732831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.97352 -37.40817 -34.99363 -34.66638 -32.43441 -31.41179 -30.44377 -28.44871 -27.56486 -25.00690 -23.80924 -22.03391 -21.78502 -20.47289 -18.95259 -17.57897 -17.17960 -16.58966 -15.92484 -15.48560 -15.40864 -14.73038 -14.39848 -14.32805 -13.92618 -13.84757 -13.60437 -13.40477 -13.12907 -12.88932 -12.64339 -12.52720 -12.25716 -11.83070 -11.67710 -11.50031 -11.22888 -11.17079 -10.95594 -10.77922 -10.69553 -10.30807 -10.01756 -9.93583 -9.74025 -9.58615 -9.13349 -8.44984 -7.76342 -7.30943 -5.77436 -3.15263 1.29971 2.39388 2.69085 3.13039 3.35682 3.38279 3.44242 4.39320 4.49210 4.53422 4.57130 4.70537 4.79433 4.91733 4.95093 4.98120 5.05930 5.09978 5.25409 5.31866 5.34646 5.41236 5.43945 5.63821 5.66422 5.72641 5.75297 5.85253 5.87447 5.97605 6.02778 6.18812 6.34614 6.59363 6.69298 6.86354 7.51622 7.98080 8.27148 8.41169 9.17945 9.89408 10.07618 11.40501 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.003217 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.354177 B = 8701.676779 C = 9367.431661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.108 4.108 4 S -0.185 6.185 5 C -0.124 4.124 6 C 0.525 3.475 7 O -0.516 6.516 8 N -0.605 5.605 9 C 0.106 3.894 10 C -0.130 4.130 11 C -0.130 4.130 12 C 0.173 3.827 13 H 0.060 0.940 14 N -0.742 5.742 15 C -0.249 4.249 16 H 0.092 0.908 17 C 0.007 3.993 18 N -0.930 5.930 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.094 3.906 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.210 0.883 5.582 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.256 4.256 4 S 0.042 5.958 5 C -0.275 4.275 6 C 0.311 3.689 7 O -0.391 6.391 8 N -0.340 5.340 9 C -0.017 4.017 10 C -0.169 4.169 11 C -0.168 4.168 12 C 0.062 3.938 13 H 0.078 0.922 14 N -0.384 5.384 15 C -0.379 4.379 16 H 0.110 0.890 17 C -0.189 4.189 18 N -0.577 5.577 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.030 4.030 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.949 -0.689 5.441 25.544 hybrid contribution -0.295 2.388 0.628 2.486 sum -25.243 1.699 6.069 26.018 Atomic orbital electron populations 1.21763 0.94775 1.02110 1.01946 1.21225 0.95879 0.93969 1.03580 1.23567 0.95714 1.01653 1.04680 1.87670 1.03858 1.06303 1.98012 1.23551 0.98486 0.98982 1.06515 1.19605 0.88513 0.83513 0.77315 1.90777 1.61763 1.37944 1.48594 1.48173 1.08227 1.04630 1.72925 1.21758 0.93872 0.86761 0.99320 1.21876 0.97169 0.99281 0.98539 1.21868 0.93855 0.98885 1.02212 1.20557 0.84342 0.92645 0.96210 0.92167 1.42724 1.00929 1.25624 1.69135 1.19102 0.86843 1.02322 1.29601 0.89026 1.24692 0.95718 0.98010 1.00483 1.69707 1.01447 1.36987 1.49555 0.86558 0.78204 0.84136 0.79644 1.21025 1.21684 1.20333 1.22834 0.76628 1.03405 1.00181 0.92556 0.92133 0.92595 0.90862 0.90923 0.90299 0.90225 0.87600 0.87451 0.90442 0.91248 0.91335 0.90860 0.91261 0.92109 0.80467 0.92978 0.92056 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.45 16 2 C -0.11 -0.80 5.94 -26.73 -0.16 -0.96 16 3 C -0.11 -0.86 5.94 37.16 0.22 -0.64 16 4 S -0.19 -2.32 20.87 -107.50 -2.24 -4.56 16 5 C -0.12 -1.36 4.77 36.01 0.17 -1.19 16 6 C 0.53 8.28 7.72 -10.98 -0.08 8.20 16 7 O -0.52 -10.69 15.28 5.56 0.08 -10.60 16 8 N -0.60 -8.84 2.97 -172.48 -0.51 -9.35 16 9 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 10 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 11 C -0.13 -1.84 5.35 -26.69 -0.14 -1.99 16 12 C 0.17 3.27 2.94 -67.56 -0.20 3.07 16 13 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 14 N -0.74 -17.31 4.93 -53.07 -0.26 -17.57 16 15 C -0.25 -7.07 10.41 -15.06 -0.16 -7.22 16 16 H 0.09 2.85 8.06 -52.48 -0.42 2.42 16 17 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 18 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 19 Si 0.88 21.99 27.73 -169.99 -4.71 17.27 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 23 C 0.09 1.71 6.05 -3.47 -0.02 1.69 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 0.89 7.94 -51.92 -0.41 0.48 16 32 H 0.11 0.94 7.69 -51.92 -0.40 0.54 16 33 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.36 8.19 5.66 -40.82 -0.23 7.96 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.10 2.15 7.00 -51.93 -0.36 1.78 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -34.34 347.97 -9.13 -43.47 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.22 Total: 4.70 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.28 Total: 0.15 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.00 Total: -55.68 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.24 Total: -4.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.34 -9.13 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207549303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.050 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds