Wall clock time and date at job start Tue Mar 31 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46832 * 2 1 4 4 S 1.81394 * 109.46960 * 179.97438 * 3 2 1 5 5 C 1.81408 * 102.99810 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46846 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00072 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.46925 * 120.62933 * 0.02562 * 8 6 5 10 10 C 1.53191 * 108.77562 * 233.58346 * 9 8 6 11 11 C 1.53040 * 109.31327 * 305.36286 * 10 9 8 12 12 C 1.53044 * 109.53609 * 61.36519 * 11 10 9 13 13 H 1.09004 * 109.49706 * 58.61864 * 12 11 10 14 14 N 1.46501 * 109.50112 * 178.68200 * 12 11 10 15 15 C 1.36932 * 120.00234 * 205.00362 * 14 12 11 16 16 H 1.08006 * 120.00212 * 359.97438 * 15 14 12 17 17 C 1.38810 * 120.00174 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00270 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99763 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47122 * 90.00527 * 19 17 15 21 21 H 1.48507 * 109.47091 * 210.00439 * 19 17 15 22 22 H 1.48506 * 109.47254 * 330.00212 * 19 17 15 23 23 C 1.46927 * 120.63015 * 179.72067 * 8 6 5 24 24 H 1.08997 * 109.47379 * 60.00054 * 1 2 3 25 25 H 1.09006 * 109.47079 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47577 * 299.99607 * 1 2 3 27 27 H 1.09002 * 109.46921 * 240.00614 * 2 1 3 28 28 H 1.08997 * 109.47379 * 119.99945 * 2 1 3 29 29 H 1.09005 * 109.46565 * 60.00151 * 3 2 1 30 30 H 1.08997 * 109.47094 * 300.00120 * 3 2 1 31 31 H 1.09000 * 109.46602 * 60.00357 * 5 4 3 32 32 H 1.09000 * 109.47286 * 300.00088 * 5 4 3 33 33 H 1.08999 * 109.59121 * 353.37387 * 9 8 6 34 34 H 1.08998 * 109.58763 * 113.79424 * 9 8 6 35 35 H 1.08998 * 109.50092 * 65.31633 * 10 9 8 36 36 H 1.09004 * 109.49944 * 185.38496 * 10 9 8 37 37 H 1.08996 * 109.46139 * 181.38324 * 11 10 9 38 38 H 1.09002 * 109.46109 * 301.36412 * 11 10 9 39 39 H 0.97001 * 119.99354 * 24.99732 * 14 12 11 40 40 H 0.96999 * 120.00025 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.58071 * 246.20340 * 23 8 6 42 42 H 1.08995 * 109.58576 * 6.62794 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8538 1.4426 0.0008 5 6 4.2618 3.2102 0.0015 6 6 5.7593 3.3801 0.0015 7 8 6.4802 2.4048 0.0006 8 7 6.2973 4.6158 0.0015 9 6 5.4369 5.8068 0.0020 10 6 5.8457 6.7108 -1.1652 11 6 7.3421 7.0165 -1.0687 12 6 8.1381 5.7129 -1.1656 13 1 7.9091 5.2161 -2.1085 14 7 9.5715 6.0094 -1.1047 15 6 10.4740 5.1443 -1.6634 16 1 10.1291 4.2431 -2.1487 17 6 11.8321 5.4250 -1.6052 18 7 12.6997 4.5932 -2.1418 19 14 12.4286 6.9833 -0.7654 20 1 12.6773 6.7067 0.6722 21 1 13.6878 7.4403 -1.4066 22 1 11.3951 8.0419 -0.8943 23 6 7.7552 4.7975 0.0077 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6765 1.9563 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 3.8425 3.6794 0.8915 32 1 3.8432 3.6801 -0.8885 33 1 4.3960 5.5058 -0.1162 34 1 5.5591 6.3455 0.9416 35 1 5.6379 6.2044 -2.1078 36 1 5.2802 7.6416 -1.1199 37 1 7.6307 7.6796 -1.8842 38 1 7.5531 7.5005 -0.1150 39 1 9.8811 6.8187 -0.6687 40 1 13.6487 4.7896 -2.1015 41 1 8.0623 5.2558 0.9479 42 1 8.2445 3.8303 -0.1067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207549303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:03 Heat of formation + Delta-G solvation = -55.001929 kcal Electronic energy + Delta-G solvation = -20507.359939 eV Core-core repulsion = 17419.604486 eV Total energy + Delta-G solvation = -3087.755453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20919 -38.77384 -36.36083 -35.54064 -34.09289 -32.92981 -31.73193 -29.86815 -28.12229 -26.16805 -25.64704 -23.14608 -22.66069 -21.90856 -20.20911 -19.54312 -18.34522 -17.60210 -16.95777 -16.69463 -16.43481 -16.22917 -15.86971 -15.50061 -15.07539 -14.83257 -14.66551 -14.48349 -14.36591 -14.16565 -13.84592 -13.69078 -13.33826 -13.22116 -12.98724 -12.60325 -12.36936 -12.12270 -12.05045 -11.94921 -11.86611 -11.80664 -11.70657 -11.39817 -11.18352 -10.98148 -10.79046 -9.87216 -9.28600 -8.70889 -8.06246 -5.42865 0.45844 1.34860 1.40996 1.48081 1.50837 1.63065 1.98772 2.45645 3.24120 3.40069 3.52720 3.91542 3.95429 3.98374 4.01212 4.06541 4.08278 4.20814 4.25433 4.34696 4.41425 4.58774 4.59724 4.69142 4.71126 4.84287 4.86580 4.89775 5.00981 5.13283 5.17485 5.21376 5.35008 5.40035 5.44008 5.45869 5.72238 6.17423 6.36297 7.02420 7.08949 7.75280 7.97536 9.15635 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.003217 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.354177 B = 8701.676779 C = 9367.431661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.081 4.081 4 S -0.279 6.279 5 C -0.099 4.099 6 C 0.513 3.487 7 O -0.581 6.581 8 N -0.602 5.602 9 C 0.099 3.901 10 C -0.123 4.123 11 C -0.122 4.122 12 C 0.170 3.830 13 H 0.029 0.971 14 N -0.744 5.744 15 C -0.239 4.239 16 H 0.042 0.958 17 C -0.067 4.067 18 N -0.986 5.986 19 Si 0.965 3.035 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.242 1.242 23 C 0.106 3.894 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.371 0.629 40 H 0.259 0.741 41 H 0.070 0.930 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.066 4.592 7.062 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.229 4.229 4 S -0.053 6.053 5 C -0.249 4.249 6 C 0.301 3.699 7 O -0.461 6.461 8 N -0.335 5.335 9 C -0.022 4.022 10 C -0.161 4.161 11 C -0.160 4.160 12 C 0.060 3.940 13 H 0.047 0.953 14 N -0.387 5.387 15 C -0.370 4.370 16 H 0.060 0.940 17 C -0.258 4.258 18 N -0.635 5.635 19 Si 0.791 3.209 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.166 1.166 23 C -0.020 4.020 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.205 0.795 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -28.906 3.074 6.932 29.884 hybrid contribution 0.815 1.114 0.121 1.385 sum -28.091 4.188 7.053 29.264 Atomic orbital electron populations 1.21725 0.92845 1.02694 1.02754 1.21258 0.97308 0.93700 1.02618 1.23579 0.90811 1.02182 1.06372 1.88107 1.09512 1.09372 1.98310 1.23447 0.94257 0.97520 1.09682 1.20536 0.90634 0.82818 0.75901 1.90757 1.63757 1.40171 1.51378 1.48237 1.06924 1.06279 1.72082 1.22223 0.94905 0.84792 1.00289 1.21893 0.94484 1.01327 0.98425 1.21812 0.95740 0.95385 1.03099 1.20746 0.82755 0.95623 0.94852 0.95315 1.42647 1.02168 1.24968 1.68923 1.18947 0.88074 1.01414 1.28550 0.93974 1.25662 0.95707 1.02477 1.01943 1.69925 1.01745 1.39865 1.51994 0.85276 0.77910 0.79735 0.77996 1.20398 1.22130 1.16592 1.22284 0.79475 1.00162 1.00082 0.91797 0.91781 0.91650 0.92069 0.91875 0.88313 0.88555 0.83812 0.84301 0.86317 0.88945 0.92045 0.86504 0.91415 0.90374 0.79498 0.93211 0.91161 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.11 -1.48 5.94 30.59 0.18 -1.30 16 3 C -0.08 -1.09 5.94 71.98 0.43 -0.66 16 4 S -0.28 -6.88 20.87 -56.49 -1.18 -8.06 16 5 C -0.10 -1.89 4.77 71.24 0.34 -1.55 16 6 C 0.51 16.06 7.72 87.66 0.68 16.74 16 7 O -0.58 -25.70 15.28 -3.03 -0.05 -25.75 16 8 N -0.60 -16.79 2.97 -817.99 -2.43 -19.21 16 9 C 0.10 1.50 6.34 86.36 0.55 2.04 16 10 C -0.12 -2.00 6.08 30.67 0.19 -1.81 16 11 C -0.12 -3.09 5.35 30.62 0.16 -2.93 16 12 C 0.17 6.48 2.94 45.23 0.13 6.61 16 13 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 14 N -0.74 -35.11 4.93 -321.81 -1.59 -36.69 16 15 C -0.24 -14.27 10.41 84.03 0.88 -13.40 16 16 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 17 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 18 N -0.99 -65.66 13.97 21.65 0.30 -65.36 16 19 Si 0.97 45.79 27.73 68.60 1.90 47.70 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.24 -9.97 6.52 99.48 0.65 -9.33 16 23 C 0.11 3.97 6.05 86.52 0.52 4.50 16 24 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.14 1.69 7.94 -2.39 -0.02 1.67 16 32 H 0.14 1.80 7.69 -2.39 -0.02 1.78 16 33 H 0.12 0.90 5.93 -2.39 -0.01 0.88 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.37 16.15 5.66 -92.71 -0.52 15.63 16 40 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 41 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 42 H 0.04 1.95 7.00 -2.39 -0.02 1.93 16 Total: -1.00 -84.90 347.97 2.61 -82.29 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.40 Total: 20.94 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.24 Total: 4.14 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -3.71 Total: -121.26 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.75 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.70 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.18 Total: -8.06 kcal Total: -84.90 2.61 -82.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207549303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.288 kcal (2) G-P(sol) polarization free energy of solvation -84.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds