Wall clock time and date at job start Tue Mar 31 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46904 * 109.47152 * 2 1 4 4 C 1.46898 * 111.00064 * 66.04290 * 3 2 1 5 5 C 1.53237 * 109.34027 * 172.74504 * 4 3 2 6 6 H 1.08994 * 109.63425 * 294.12526 * 5 4 3 7 7 C 1.53004 * 109.79094 * 173.63732 * 5 4 3 8 8 N 1.47084 * 108.52115 * 53.83414 * 5 4 3 9 9 C 1.34774 * 120.88346 * 128.81488 * 8 5 4 10 10 O 1.21285 * 120.00203 * 355.22174 * 9 8 5 11 11 C 1.50704 * 119.99946 * 175.49940 * 9 8 5 12 12 S 1.81001 * 109.47135 * 179.72586 * 11 9 8 13 13 C 1.76194 * 99.99996 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00312 * 359.97438 * 13 12 11 15 15 C 1.38797 * 119.99942 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99922 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00073 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46573 * 60.00128 * 17 15 13 19 19 H 1.48499 * 109.47055 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47187 * 300.00214 * 17 15 13 21 21 C 1.47081 * 118.23501 * 309.09058 * 8 5 4 22 22 C 1.46898 * 110.99779 * 301.74352 * 3 2 1 23 23 H 1.09010 * 109.49575 * 67.26962 * 22 3 2 24 24 C 1.52997 * 109.49662 * 307.21436 * 22 3 2 25 25 H 1.09005 * 109.46758 * 300.00221 * 1 2 3 26 26 H 1.09002 * 109.46584 * 59.99950 * 1 2 3 27 27 H 1.08990 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47284 * 240.00345 * 2 1 3 29 29 H 1.08998 * 109.47141 * 119.99602 * 2 1 3 30 30 H 1.09001 * 109.49226 * 52.78918 * 4 3 2 31 31 H 1.08999 * 109.51841 * 292.72154 * 4 3 2 32 32 H 1.09008 * 109.46837 * 294.56649 * 7 5 4 33 33 H 1.09000 * 109.47077 * 54.56360 * 7 5 4 34 34 H 1.09001 * 109.47206 * 174.56585 * 7 5 4 35 35 H 1.08998 * 109.46596 * 299.72254 * 11 9 8 36 36 H 1.09001 * 109.47072 * 59.72289 * 11 9 8 37 37 H 0.97002 * 120.00094 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.62758 * 170.62039 * 21 8 5 39 39 H 1.09002 * 109.62652 * 291.20088 * 21 8 5 40 40 H 1.09003 * 109.47086 * 59.99603 * 24 22 3 41 41 H 1.08999 * 109.47558 * 180.02562 * 24 22 3 42 42 H 1.08999 * 109.47028 * 300.00343 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2533 5 6 2.3499 3.4399 1.2906 6 1 3.4312 3.3119 1.3399 7 6 1.8688 4.2230 2.5138 8 7 1.9943 4.1708 0.0648 9 6 1.5037 5.4246 0.1247 10 8 1.2687 5.9332 1.2004 11 6 1.2413 6.1926 -1.1451 12 16 0.5829 7.8282 -0.7360 13 6 0.3750 8.4884 -2.3563 14 1 0.6377 7.8945 -3.2192 15 6 -0.1263 9.7718 -2.5237 16 7 -0.4460 10.4959 -1.4719 17 14 -0.3461 10.4721 -4.2415 18 1 -1.2871 9.6165 -5.0080 19 1 -0.8937 11.8493 -4.1483 20 1 0.9672 10.5069 -4.9336 21 6 2.1825 3.4948 -1.2278 22 6 1.5149 2.1218 -1.1663 23 1 0.4359 2.2484 -1.0775 24 6 1.8339 1.3394 -2.4418 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0101 1.4697 2.0994 31 1 0.5892 2.1947 1.3091 32 1 0.8057 4.4407 2.4107 33 1 2.0325 3.6290 3.4130 34 1 2.4254 5.1572 2.5891 35 1 2.1722 6.3043 -1.7011 36 1 0.5171 5.6513 -1.7540 37 1 -0.7967 11.3927 -1.5888 38 1 1.7260 4.0872 -2.0207 39 1 3.2474 3.3721 -1.4253 40 1 1.3568 0.3604 -2.3963 41 1 1.4596 1.8866 -3.3070 42 1 2.9129 1.2138 -2.5307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345964310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:15 Heat of formation + Delta-G solvation = -15.308246 kcal Electronic energy + Delta-G solvation = -21473.757118 eV Core-core repulsion = 18387.722912 eV Total energy + Delta-G solvation = -3086.034206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50440 -38.44509 -35.05406 -33.72669 -32.42309 -31.30575 -29.66118 -28.41854 -26.23010 -25.47205 -25.25446 -23.10126 -22.08672 -19.94501 -18.81625 -17.57426 -16.50694 -16.27077 -15.87919 -15.52177 -15.34306 -14.80098 -14.58289 -14.26215 -13.75356 -13.48540 -13.13223 -12.90077 -12.76434 -12.56656 -12.49266 -12.18705 -12.12773 -11.87984 -11.76192 -11.67541 -11.37819 -11.11115 -11.03365 -11.01651 -10.91308 -10.79464 -10.72877 -9.80318 -9.05365 -8.71226 -8.65602 -8.25789 -8.21814 -6.49048 -6.20967 -3.91384 2.92850 3.07957 3.23618 3.25690 3.29203 3.58255 3.67136 4.21124 4.57766 4.65075 4.69729 4.91436 4.98931 5.01845 5.09289 5.11686 5.14117 5.21451 5.30768 5.36738 5.45581 5.49140 5.58644 5.61438 5.65439 5.72914 5.74598 5.82434 5.86585 5.88857 5.91005 6.08694 6.13674 6.32558 6.51972 6.78459 6.83956 6.92017 7.59500 7.65256 8.35452 8.62765 9.24210 10.86396 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.004087 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.498500 B = 6849.855582 C = 7631.429249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.043 3.957 5 C 0.151 3.849 6 H 0.073 0.927 7 C -0.137 4.137 8 N -0.619 5.619 9 C 0.535 3.465 10 O -0.509 6.509 11 C -0.152 4.152 12 S -0.060 6.060 13 C -0.536 4.536 14 H 0.071 0.929 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.118 3.882 22 C 0.064 3.936 23 H 0.050 0.950 24 C -0.148 4.148 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.269 0.731 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -21.557 1.079 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.080 4.080 3 N -0.256 5.256 4 C -0.085 4.085 5 C 0.047 3.953 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.356 5.356 9 C 0.323 3.677 10 O -0.384 6.384 11 C -0.303 4.303 12 S 0.167 5.833 13 C -0.684 4.684 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.744 3.256 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.006 4.006 22 C -0.045 4.045 23 H 0.068 0.932 24 C -0.205 4.205 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.108 -20.614 2.718 21.410 hybrid contribution -0.797 -0.239 -2.400 2.540 sum 4.311 -20.852 0.317 21.296 Atomic orbital electron populations 1.22453 0.98200 1.02260 1.02390 1.22208 0.92947 0.89970 1.02833 1.62200 1.59329 1.02025 1.02076 1.22605 0.98825 0.94977 0.92118 1.21284 0.98884 0.89958 0.85132 0.90861 1.22189 1.03919 0.99524 0.93824 1.48207 1.66053 1.14555 1.06738 1.20284 0.75855 0.80405 0.91159 1.90739 1.49830 1.68370 1.29463 1.23607 1.04642 1.03989 0.98042 1.85357 1.82228 1.04182 1.11552 1.22822 1.50261 1.02955 0.92363 0.91047 1.24979 0.94685 0.95816 0.98010 1.70008 1.40764 1.10360 1.29185 0.86240 0.78650 0.78047 0.82665 1.19961 1.20807 1.19914 1.21754 1.01203 0.91801 0.85823 1.21944 0.97779 0.93693 0.91114 0.93188 1.21885 1.02751 1.00035 0.95873 0.92504 0.92223 0.92158 0.90175 0.90814 0.89864 0.93991 0.90976 0.94156 0.90319 0.89365 0.89596 0.92144 0.89041 0.90839 0.92037 0.91702 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 9.08 37.16 0.34 -1.23 16 2 C 0.05 0.39 5.51 -3.82 -0.02 0.36 16 3 N -0.53 -5.32 4.68 -226.63 -1.06 -6.38 16 4 C 0.04 0.47 4.47 -3.70 -0.02 0.46 16 5 C 0.15 1.98 3.65 -67.49 -0.25 1.73 16 6 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.14 -1.98 7.63 37.16 0.28 -1.69 16 8 N -0.62 -9.23 3.02 -165.19 -0.50 -9.73 16 9 C 0.53 10.22 7.62 -10.98 -0.08 10.14 16 10 O -0.51 -11.21 11.37 5.55 0.06 -11.15 16 11 C -0.15 -3.12 4.59 36.01 0.17 -2.96 16 12 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 13 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 14 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 15 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 16 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 17 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.12 1.42 5.74 -3.84 -0.02 1.39 16 22 C 0.06 0.66 1.96 -67.83 -0.13 0.53 16 23 H 0.05 0.59 6.70 -51.92 -0.35 0.24 16 24 C -0.15 -1.19 8.62 37.16 0.32 -0.87 16 25 H 0.06 0.51 6.72 -51.93 -0.35 0.16 16 26 H 0.06 0.52 6.17 -51.93 -0.32 0.20 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.58 6.31 -51.93 -0.33 0.25 16 29 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 30 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 31 H 0.04 0.51 6.84 -51.93 -0.35 0.15 16 32 H 0.07 1.21 6.78 -51.92 -0.35 0.86 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.32 6.77 -51.93 -0.35 0.97 16 35 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.09 1.64 7.45 -51.92 -0.39 1.26 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.09 1.10 6.04 -51.93 -0.31 0.78 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.44 5.96 -51.93 -0.31 0.13 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -32.44 332.49 -8.96 -41.39 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.75 Total: -1.12 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 0.78 Total: -5.08 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.82 Total: -41.58 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.06 Total: -11.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.44 -8.96 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345964310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.084 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds