Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46838 * 2 1 4 4 C 1.46500 * 120.00043 * 265.82728 * 3 2 1 5 5 C 1.53009 * 109.47311 * 259.08019 * 4 3 2 6 6 C 1.34775 * 119.99845 * 85.83207 * 3 2 1 7 7 O 1.21663 * 119.99992 * 0.07830 * 6 3 2 8 8 C 1.46884 * 119.99930 * 180.08694 * 6 3 2 9 9 C 1.36122 * 125.43680 * 351.54487 * 8 6 3 10 10 C 1.41699 * 107.74930 * 179.97438 * 9 8 6 11 11 C 1.40021 * 133.34927 * 179.97438 * 10 9 8 12 12 C 1.36576 * 119.83150 * 180.02562 * 11 10 9 13 13 C 1.38859 * 120.59983 * 359.97438 * 12 11 10 14 14 C 1.37838 * 120.63136 * 0.24607 * 13 12 11 15 15 C 1.39088 * 119.81615 * 359.55169 * 14 13 12 16 16 N 1.37831 * 133.16721 * 180.11016 * 15 14 13 17 17 C 1.36896 * 125.62160 * 0.28856 * 16 15 14 18 18 H 1.08001 * 119.99807 * 217.52878 * 17 16 15 19 19 C 1.39011 * 119.99832 * 37.52254 * 17 16 15 20 20 N 1.31348 * 120.00011 * 14.55776 * 19 17 16 21 21 Si 1.86799 * 119.99890 * 194.55141 * 19 17 16 22 22 H 1.48503 * 109.46940 * 94.99081 * 21 19 17 23 23 H 1.48497 * 109.47337 * 214.99010 * 21 19 17 24 24 H 1.48497 * 109.47109 * 334.99292 * 21 19 17 25 25 H 1.08995 * 109.46787 * 299.99488 * 1 2 3 26 26 H 1.08996 * 109.47230 * 59.99718 * 1 2 3 27 27 H 1.08999 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47251 * 240.00456 * 2 1 3 29 29 H 1.08999 * 109.47715 * 120.00378 * 2 1 3 30 30 H 1.09002 * 109.46978 * 19.07461 * 4 3 2 31 31 H 1.08999 * 109.47147 * 139.07896 * 4 3 2 32 32 H 1.08988 * 109.47068 * 187.09166 * 5 4 3 33 33 H 1.08999 * 109.46538 * 307.09324 * 5 4 3 34 34 H 1.09003 * 109.46540 * 67.08494 * 5 4 3 35 35 H 1.08006 * 126.12504 * 359.96340 * 9 8 6 36 36 H 1.08007 * 120.08650 * 0.03590 * 11 10 9 37 37 H 1.08006 * 119.69973 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.67864 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.09656 * 179.70092 * 14 13 12 40 40 H 0.96998 * 120.00323 * 184.94907 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3494 2.0412 -1.2654 5 6 3.8662 2.0265 -1.4666 6 6 2.1629 2.0449 1.1641 7 8 1.8893 1.4964 2.2150 8 6 2.6506 3.4304 1.1640 9 6 3.1405 4.0946 0.0815 10 6 3.4998 5.3993 0.5014 11 6 4.0460 6.5058 -0.1604 12 6 4.2883 7.6589 0.5301 13 6 3.9974 7.7459 1.8851 14 6 3.4635 6.6688 2.5593 15 6 3.2039 5.4851 1.8765 16 7 2.6849 4.2681 2.2628 17 6 2.2711 3.9426 3.5265 18 1 2.4495 2.9506 3.9144 19 6 1.6214 4.8891 4.3104 20 7 1.1499 5.9851 3.7610 21 14 1.4187 4.6022 6.1451 22 1 2.5234 5.2735 6.8760 23 1 0.1177 5.1608 6.5927 24 1 1.4541 3.1443 6.4250 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8687 1.5116 -2.0880 31 1 1.9961 3.0720 -1.2409 32 1 4.1225 2.6248 -2.3407 33 1 4.3536 2.4434 -0.5853 34 1 4.2028 1.0007 -1.6168 35 1 3.2380 3.6980 -0.9184 36 1 4.2750 6.4475 -1.2143 37 1 4.7101 8.5110 0.0176 38 1 4.1946 8.6652 2.4164 39 1 3.2449 6.7444 3.6143 40 1 0.7608 6.6779 4.3174 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609159752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = 55.121774 kcal Electronic energy + Delta-G solvation = -23289.634937 eV Core-core repulsion = 20071.210855 eV Total energy + Delta-G solvation = -3218.424082 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.64394 -38.83348 -36.02119 -35.63828 -33.72326 -32.31898 -30.40196 -29.29622 -28.90391 -27.77522 -24.84333 -23.77094 -23.22617 -21.76583 -20.66596 -20.00889 -18.66970 -17.65289 -16.25258 -15.98274 -15.51092 -14.99952 -14.82941 -14.53321 -13.95330 -13.90367 -13.48614 -13.24444 -12.87847 -12.82795 -12.54580 -12.27159 -12.18882 -11.86273 -11.73135 -11.48873 -11.31305 -11.23844 -10.97972 -10.92640 -10.76110 -10.62038 -10.37212 -10.15873 -9.64324 -9.08864 -9.00628 -8.53043 -8.26984 -7.13408 -6.76779 -6.45127 -4.36273 1.89412 2.82383 3.06845 3.09526 3.14875 3.21685 3.33819 3.90869 4.28208 4.72539 4.79987 5.12176 5.15745 5.18159 5.34520 5.51626 5.59103 5.61661 5.69790 5.80039 5.88992 5.97341 6.00712 6.04084 6.16453 6.24469 6.40188 6.45424 6.50319 6.63064 6.76771 6.88106 7.05106 7.11148 7.17068 7.23834 7.55035 7.64282 7.74294 7.84266 8.05208 8.17617 8.49260 8.81279 9.02583 9.39210 10.28048 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.008151 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.381174 B = 3434.486606 C = 5290.864390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.613 5.613 4 C 0.092 3.908 5 C -0.184 4.184 6 C 0.588 3.412 7 O -0.535 6.535 8 C -0.024 4.024 9 C -0.238 4.238 10 C -0.127 4.127 11 C -0.094 4.094 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.044 4.044 15 C 0.084 3.916 16 N -0.231 5.231 17 C -0.331 4.331 18 H 0.120 0.880 19 C 0.047 3.953 20 N -0.825 5.825 21 Si 0.930 3.070 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.261 1.261 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.163 0.837 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 -4.444 -8.474 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.348 5.348 4 C -0.031 4.031 5 C -0.242 4.242 6 C 0.379 3.621 7 O -0.412 6.412 8 C -0.141 4.141 9 C -0.264 4.264 10 C -0.132 4.132 11 C -0.113 4.113 12 C -0.175 4.175 13 C -0.178 4.178 14 C -0.063 4.063 15 C -0.031 4.031 16 N 0.109 4.891 17 C -0.460 4.460 18 H 0.137 0.863 19 C -0.165 4.165 20 N -0.455 5.455 21 Si 0.754 3.246 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.185 1.185 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.179 0.821 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.789 -4.725 -7.493 9.037 hybrid contribution -0.357 0.107 0.762 0.849 sum 1.432 -4.618 -6.731 8.287 Atomic orbital electron populations 1.22145 0.96356 1.01535 1.02590 1.21285 0.94133 0.82550 1.02362 1.47640 1.67262 1.13656 1.06211 1.22132 0.95683 1.00041 0.85253 1.22542 0.96536 1.01664 1.03411 1.17276 0.77043 0.84872 0.82887 1.90742 1.50721 1.68990 1.30775 1.19585 1.13070 0.93229 0.88230 1.21747 1.12109 0.94017 0.98562 1.18049 1.06661 0.94841 0.93635 1.19991 1.00918 0.92500 0.97882 1.20256 1.05209 0.97355 0.94687 1.20536 1.05063 0.97610 0.94609 1.20185 0.96210 0.90331 0.99587 1.18158 1.02399 0.88991 0.93564 1.39960 1.36081 1.07253 1.05823 1.20176 1.36453 1.01672 0.87651 0.86270 1.25678 0.93509 0.95619 1.01654 1.70023 1.31296 1.07432 1.36771 0.85834 0.78193 0.79837 0.80706 1.19514 1.20251 1.18452 0.91891 0.92818 0.92153 0.91028 0.90414 0.91112 0.88130 0.91448 0.89990 0.93063 0.82053 0.88015 0.88143 0.87877 0.86733 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.21 37.16 0.38 -1.87 16 2 C 0.12 1.68 6.04 -4.04 -0.02 1.66 16 3 N -0.61 -10.44 2.52 -175.15 -0.44 -10.88 16 4 C 0.09 1.26 5.65 -4.04 -0.02 1.24 16 5 C -0.18 -2.32 8.40 37.16 0.31 -2.01 16 6 C 0.59 13.19 7.46 -12.76 -0.10 13.10 16 7 O -0.54 -13.64 14.58 5.22 0.08 -13.56 16 8 C -0.02 -0.58 6.50 -82.25 -0.53 -1.11 16 9 C -0.24 -5.04 7.05 -39.02 -0.28 -5.32 16 10 C -0.13 -2.94 6.16 -106.89 -0.66 -3.60 16 11 C -0.09 -1.89 10.06 -39.51 -0.40 -2.29 16 12 C -0.16 -3.04 9.97 -39.95 -0.40 -3.43 16 13 C -0.16 -3.31 10.02 -39.50 -0.40 -3.70 16 14 C -0.04 -1.06 8.46 -39.41 -0.33 -1.39 16 15 C 0.08 2.17 6.07 -83.84 -0.51 1.66 16 16 N -0.23 -6.25 2.84 -56.08 -0.16 -6.41 16 17 C -0.33 -9.18 8.95 -15.00 -0.13 -9.31 16 18 H 0.12 3.40 6.71 -52.49 -0.35 3.04 16 19 C 0.05 1.22 4.57 -17.47 -0.08 1.14 16 20 N -0.83 -22.14 10.44 55.50 0.58 -21.56 16 21 Si 0.93 20.16 29.58 -169.99 -5.03 15.13 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 29 H 0.08 1.20 7.55 -51.93 -0.39 0.81 16 30 H 0.07 0.76 7.97 -51.93 -0.41 0.34 16 31 H 0.10 1.53 5.22 -51.93 -0.27 1.26 16 32 H 0.07 0.71 8.07 -51.94 -0.42 0.29 16 33 H 0.08 1.29 5.81 -51.93 -0.30 0.99 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.16 2.75 2.81 -52.48 -0.15 2.61 16 36 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 39 H 0.11 2.88 6.27 -52.48 -0.33 2.55 16 40 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -31.23 320.35 -8.45 -39.68 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.14 Total: 8.01 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -3.17 Total: -15.25 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.02 Total: -38.85 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.23 -8.45 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609159752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.806 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds