Wall clock time and date at job start Tue Mar 31 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46838 * 2 1 4 4 C 1.46500 * 120.00043 * 265.82728 * 3 2 1 5 5 C 1.53009 * 109.47311 * 259.08019 * 4 3 2 6 6 C 1.34775 * 119.99845 * 85.83207 * 3 2 1 7 7 O 1.21663 * 119.99992 * 0.07830 * 6 3 2 8 8 C 1.46884 * 119.99930 * 180.08694 * 6 3 2 9 9 C 1.36122 * 125.43680 * 351.54487 * 8 6 3 10 10 C 1.41699 * 107.74930 * 179.97438 * 9 8 6 11 11 C 1.40021 * 133.34927 * 179.97438 * 10 9 8 12 12 C 1.36576 * 119.83150 * 180.02562 * 11 10 9 13 13 C 1.38859 * 120.59983 * 359.97438 * 12 11 10 14 14 C 1.37838 * 120.63136 * 0.24607 * 13 12 11 15 15 C 1.39088 * 119.81615 * 359.55169 * 14 13 12 16 16 N 1.37831 * 133.16721 * 180.11016 * 15 14 13 17 17 C 1.36896 * 125.62160 * 0.28856 * 16 15 14 18 18 H 1.08001 * 119.99807 * 217.52878 * 17 16 15 19 19 C 1.39011 * 119.99832 * 37.52254 * 17 16 15 20 20 N 1.31348 * 120.00011 * 14.55776 * 19 17 16 21 21 Si 1.86799 * 119.99890 * 194.55141 * 19 17 16 22 22 H 1.48503 * 109.46940 * 94.99081 * 21 19 17 23 23 H 1.48497 * 109.47337 * 214.99010 * 21 19 17 24 24 H 1.48497 * 109.47109 * 334.99292 * 21 19 17 25 25 H 1.08995 * 109.46787 * 299.99488 * 1 2 3 26 26 H 1.08996 * 109.47230 * 59.99718 * 1 2 3 27 27 H 1.08999 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47251 * 240.00456 * 2 1 3 29 29 H 1.08999 * 109.47715 * 120.00378 * 2 1 3 30 30 H 1.09002 * 109.46978 * 19.07461 * 4 3 2 31 31 H 1.08999 * 109.47147 * 139.07896 * 4 3 2 32 32 H 1.08988 * 109.47068 * 187.09166 * 5 4 3 33 33 H 1.08999 * 109.46538 * 307.09324 * 5 4 3 34 34 H 1.09003 * 109.46540 * 67.08494 * 5 4 3 35 35 H 1.08006 * 126.12504 * 359.96340 * 9 8 6 36 36 H 1.08007 * 120.08650 * 0.03590 * 11 10 9 37 37 H 1.08006 * 119.69973 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.67864 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.09656 * 179.70092 * 14 13 12 40 40 H 0.96998 * 120.00323 * 184.94907 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3494 2.0412 -1.2654 5 6 3.8662 2.0265 -1.4666 6 6 2.1629 2.0449 1.1641 7 8 1.8893 1.4964 2.2150 8 6 2.6506 3.4304 1.1640 9 6 3.1405 4.0946 0.0815 10 6 3.4998 5.3993 0.5014 11 6 4.0460 6.5058 -0.1604 12 6 4.2883 7.6589 0.5301 13 6 3.9974 7.7459 1.8851 14 6 3.4635 6.6688 2.5593 15 6 3.2039 5.4851 1.8765 16 7 2.6849 4.2681 2.2628 17 6 2.2711 3.9426 3.5265 18 1 2.4495 2.9506 3.9144 19 6 1.6214 4.8891 4.3104 20 7 1.1499 5.9851 3.7610 21 14 1.4187 4.6022 6.1451 22 1 2.5234 5.2735 6.8760 23 1 0.1177 5.1608 6.5927 24 1 1.4541 3.1443 6.4250 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8687 1.5116 -2.0880 31 1 1.9961 3.0720 -1.2409 32 1 4.1225 2.6248 -2.3407 33 1 4.3536 2.4434 -0.5853 34 1 4.2028 1.0007 -1.6168 35 1 3.2380 3.6980 -0.9184 36 1 4.2750 6.4475 -1.2143 37 1 4.7101 8.5110 0.0176 38 1 4.1946 8.6652 2.4164 39 1 3.2449 6.7444 3.6143 40 1 0.7608 6.6779 4.3174 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609159752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:33 Heat of formation + Delta-G solvation = 37.122568 kcal Electronic energy + Delta-G solvation = -23290.415441 eV Core-core repulsion = 20071.210855 eV Total energy + Delta-G solvation = -3219.204586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34656 -40.41737 -37.61473 -37.27276 -35.50593 -33.65693 -32.10397 -30.71168 -30.54267 -29.39143 -26.73453 -25.26920 -24.35117 -23.29811 -22.34164 -21.69680 -20.24957 -19.39577 -17.79036 -17.53212 -17.26415 -16.65184 -16.45808 -16.12147 -15.49938 -15.41793 -15.00462 -14.62726 -14.59369 -14.48290 -14.05674 -13.70121 -13.60197 -13.43695 -13.12112 -12.97565 -12.88718 -12.61461 -12.47177 -12.33163 -12.16691 -12.08387 -11.91252 -11.77673 -11.30959 -10.90221 -10.77943 -10.27214 -9.68102 -8.96972 -8.57812 -8.24380 -6.36717 0.18800 1.12545 1.26369 1.34803 1.40922 1.49568 1.91078 2.14355 2.50017 2.92164 3.09255 3.41706 3.76703 4.09499 4.18385 4.25182 4.31231 4.45598 4.47232 4.53710 4.56360 4.64332 4.72496 4.79573 4.89818 4.96492 4.99955 5.09108 5.10860 5.14815 5.26110 5.30385 5.44170 5.46916 5.50760 5.71861 5.82877 5.95092 6.01045 6.27258 6.32046 6.51626 6.60925 7.01510 7.33031 7.51138 8.37441 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.008151 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.381174 B = 3434.486606 C = 5290.864390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.600 5.600 4 C 0.083 3.917 5 C -0.181 4.181 6 C 0.577 3.423 7 O -0.584 6.584 8 C -0.059 4.059 9 C -0.204 4.204 10 C -0.156 4.156 11 C -0.084 4.084 12 C -0.157 4.157 13 C -0.141 4.141 14 C -0.088 4.088 15 C 0.057 3.943 16 N -0.270 5.270 17 C -0.363 4.363 18 H 0.092 0.908 19 C 0.009 3.991 20 N -0.856 5.856 21 Si 0.992 3.008 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.269 1.269 25 H 0.018 0.982 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.207 0.793 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -4.071 -12.246 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.009 4.009 3 N -0.333 5.333 4 C -0.038 4.038 5 C -0.239 4.239 6 C 0.368 3.632 7 O -0.465 6.465 8 C -0.174 4.174 9 C -0.230 4.230 10 C -0.161 4.161 11 C -0.102 4.102 12 C -0.176 4.176 13 C -0.161 4.161 14 C -0.109 4.109 15 C -0.058 4.058 16 N 0.068 4.932 17 C -0.491 4.491 18 H 0.110 0.890 19 C -0.198 4.198 20 N -0.487 5.487 21 Si 0.813 3.187 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.194 1.194 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.224 0.776 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.109 0.891 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.726 -4.370 -11.327 12.443 hybrid contribution -0.551 -0.007 1.662 1.751 sum 2.175 -4.377 -9.665 10.830 Atomic orbital electron populations 1.22096 0.95755 1.03026 1.01100 1.21593 0.94626 0.80932 1.03706 1.47780 1.65347 1.14479 1.05680 1.22402 0.97085 0.99653 0.84681 1.22481 0.94955 1.03392 1.03030 1.17448 0.77027 0.84728 0.84005 1.90699 1.53066 1.69830 1.32946 1.20281 1.14041 0.94210 0.88869 1.22370 1.08303 0.92813 0.99487 1.18599 1.07948 0.96701 0.92834 1.20497 0.98615 0.91217 0.99890 1.20749 1.04312 0.98692 0.93865 1.20978 1.02149 0.97224 0.95768 1.20236 0.99736 0.91755 0.99129 1.18753 1.02557 0.89085 0.95360 1.40139 1.38434 1.08450 1.06179 1.19997 1.38523 1.01203 0.89421 0.89033 1.26447 0.92746 0.95202 1.05433 1.70095 1.32407 1.08156 1.38033 0.84953 0.78835 0.79097 0.75816 1.18111 1.19049 1.19381 0.96316 0.91217 0.89233 0.86061 0.92561 0.86432 0.89731 0.88190 0.93535 0.91186 0.77648 0.83604 0.83560 0.85180 0.89082 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 10.21 71.98 0.74 -3.39 16 2 C 0.11 3.00 6.04 86.38 0.52 3.52 16 3 N -0.60 -19.93 2.52 -826.27 -2.08 -22.01 16 4 C 0.08 1.99 5.65 86.38 0.49 2.48 16 5 C -0.18 -3.87 8.40 71.99 0.60 -3.26 16 6 C 0.58 27.15 7.46 86.51 0.65 27.79 16 7 O -0.58 -32.22 14.58 -4.23 -0.06 -32.28 16 8 C -0.06 -2.97 6.50 39.91 0.26 -2.71 16 9 C -0.20 -8.53 7.05 22.63 0.16 -8.37 16 10 C -0.16 -7.12 6.16 -21.34 -0.13 -7.25 16 11 C -0.08 -3.07 10.06 22.31 0.22 -2.85 16 12 C -0.16 -5.54 9.97 22.03 0.22 -5.32 16 13 C -0.14 -5.73 10.02 22.32 0.22 -5.51 16 14 C -0.09 -4.47 8.46 22.38 0.19 -4.28 16 15 C 0.06 3.07 6.07 39.06 0.24 3.31 16 16 N -0.27 -15.57 2.84 -331.34 -0.94 -16.52 16 17 C -0.36 -21.94 8.95 84.09 0.75 -21.19 16 18 H 0.09 5.81 6.71 -2.91 -0.02 5.79 16 19 C 0.01 0.52 4.57 84.95 0.39 0.91 16 20 N -0.86 -48.77 10.44 21.67 0.23 -48.54 16 21 Si 0.99 44.19 29.58 68.60 2.03 46.22 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.12 2.06 8.02 -2.39 -0.02 2.04 16 29 H 0.06 1.75 7.55 -2.39 -0.02 1.74 16 30 H 0.12 1.82 7.97 -2.39 -0.02 1.80 16 31 H 0.08 2.33 5.22 -2.39 -0.01 2.32 16 32 H 0.10 1.53 8.07 -2.39 -0.02 1.51 16 33 H 0.05 1.36 5.81 -2.39 -0.01 1.35 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.21 6.44 2.81 -2.91 -0.01 6.43 16 36 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 37 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 39 H 0.09 4.91 6.27 -2.91 -0.02 4.89 16 40 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -77.68 320.35 5.74 -71.94 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 1.05 Total: 27.30 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 5.52 Total: -26.10 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.80 Total: -87.07 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.06 Total: -32.28 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.68 5.74 -71.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609159752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.059 kcal (2) G-P(sol) polarization free energy of solvation -77.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds