Wall clock time and date at job start Tue Mar 31 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00058 * 2 1 4 4 H 1.48508 * 109.47434 * 240.00077 * 3 2 1 5 5 H 1.48500 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47265 * 119.99992 * 3 2 1 7 7 C 1.40032 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.41320 * 119.99544 * 0.02562 * 7 2 1 10 10 C 1.40595 * 119.78021 * 179.97438 * 9 7 2 11 11 C 1.38342 * 119.14586 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68151 * 359.97438 * 11 10 9 13 13 C 1.39751 * 119.49546 * 0.02562 * 12 11 10 14 14 N 1.38824 * 119.59213 * 179.97438 * 13 12 11 15 15 C 1.46507 * 119.99657 * 359.97438 * 14 13 12 16 16 C 1.52992 * 109.47485 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.46840 * 180.02562 * 18 17 16 20 20 C 1.36881 * 126.40136 * 89.99703 * 19 18 17 21 21 C 1.34671 * 106.82076 * 179.97438 * 20 19 18 22 22 N 1.34127 * 108.02129 * 0.02562 * 21 20 19 23 23 C 1.30511 * 109.25181 * 359.72172 * 22 21 20 24 24 N 1.31986 * 120.82985 * 0.24511 * 13 12 11 25 25 H 0.96996 * 120.00189 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.42230 * 0.02562 * 10 9 7 27 27 H 1.07996 * 120.66211 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.25307 * 180.02562 * 12 11 10 29 29 H 0.96992 * 120.00772 * 179.97438 * 14 13 12 30 30 H 1.09002 * 109.47280 * 59.99811 * 15 14 13 31 31 H 1.09001 * 109.46702 * 300.00004 * 15 14 13 32 32 H 1.09002 * 109.47103 * 59.99596 * 16 15 14 33 33 H 1.08998 * 109.46862 * 300.00408 * 16 15 14 34 34 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 35 35 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 36 36 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 37 37 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 38 38 H 1.08002 * 126.58719 * 359.96564 * 20 19 18 39 39 H 1.07999 * 125.99048 * 180.02562 * 21 20 19 40 40 H 1.07995 * 125.64679 * 180.28977 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3009 -2.4365 -0.0016 10 6 2.0085 -3.6515 -0.0027 11 6 1.3035 -4.8417 -0.0043 12 6 -0.0821 -4.7944 -0.0043 13 6 -0.7282 -3.5552 -0.0031 14 7 -2.1156 -3.5055 -0.0036 15 6 -2.8930 -4.7473 -0.0059 16 6 -4.3862 -4.4141 -0.0066 17 6 -5.1981 -5.7109 -0.0096 18 6 -6.6914 -5.3777 -0.0109 19 7 -7.4688 -6.6194 -0.0132 20 6 -7.9010 -7.3092 1.0873 21 6 -8.5743 -8.3838 0.6340 22 7 -8.5533 -8.3515 -0.7067 23 6 -7.8975 -7.2944 -1.1014 24 7 -0.0360 -2.4315 -0.0070 25 1 -0.4850 0.8400 -0.0004 26 1 3.0885 -3.6554 -0.0023 27 1 1.8221 -5.7890 -0.0056 28 1 -0.6578 -5.7082 -0.0051 29 1 -2.5702 -2.6487 -0.0025 30 1 -2.6507 -5.3293 0.8833 31 1 -2.6499 -5.3264 -0.8967 32 1 -4.6283 -3.8323 -0.8960 33 1 -4.6296 -3.8347 0.8839 34 1 -4.9562 -6.2931 0.8796 35 1 -4.9546 -6.2900 -0.9004 36 1 -6.9353 -4.7985 0.8797 37 1 -6.9330 -4.7957 -0.9002 38 1 -7.7341 -7.0428 2.1206 39 1 -9.0481 -9.1392 1.2433 40 1 -7.7245 -7.0081 -2.1282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:37 Heat of formation + Delta-G solvation = 91.000970 kcal Electronic energy + Delta-G solvation = -20771.133001 eV Core-core repulsion = 17586.557509 eV Total energy + Delta-G solvation = -3184.575492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.21836 -38.34802 -36.70537 -34.90846 -33.42495 -32.20692 -30.39358 -29.70126 -29.15644 -27.17781 -25.37359 -23.77040 -21.95352 -21.53932 -21.13656 -21.01282 -20.32024 -17.62229 -17.36294 -16.21929 -15.96125 -15.57112 -14.88655 -14.73906 -14.61381 -14.23262 -14.13886 -13.74555 -13.51533 -13.41610 -13.00677 -12.68574 -12.48707 -12.06677 -11.86800 -11.74819 -11.32153 -11.21710 -11.02443 -10.91697 -10.64084 -10.44856 -10.18970 -9.96081 -9.82272 -9.50121 -8.91258 -8.73955 -7.93311 -7.53577 -6.54899 -6.35083 -4.49525 1.84236 2.53692 2.87135 2.98213 3.08301 3.11251 3.21594 3.28667 3.96327 4.05142 4.27623 4.50798 4.52146 4.64238 4.81651 4.84259 4.91100 5.19547 5.22572 5.25833 5.43000 5.54915 5.55814 5.78202 5.97887 6.04886 6.10479 6.14051 6.17509 6.51820 6.55376 6.83426 6.87511 6.92085 6.95143 7.22928 7.57375 7.79024 7.86482 7.89708 8.14259 8.33892 8.65186 8.78108 9.09614 10.22274 10.38111 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.002497 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.338617 B =11208.726951 C =11931.999678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.367 4.367 13 C 0.410 3.590 14 N -0.741 5.741 15 C 0.144 3.856 16 C -0.127 4.127 17 C -0.130 4.130 18 C 0.103 3.897 19 N -0.457 5.457 20 C -0.056 4.056 21 C -0.034 4.034 22 N -0.499 5.499 23 C 0.180 3.820 24 N -0.532 5.532 25 H 0.270 0.730 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.395 0.605 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 -6.910 1.004 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.057 4.057 12 C -0.394 4.394 13 C 0.170 3.830 14 N -0.378 5.378 15 C 0.018 3.982 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.019 4.019 19 N -0.139 5.139 20 C -0.189 4.189 21 C -0.182 4.182 22 N -0.217 5.217 23 C -0.102 4.102 24 N -0.253 5.253 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.229 0.771 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.190 0.810 39 H 0.185 0.815 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.627 -6.627 0.482 16.065 hybrid contribution 1.092 0.769 0.585 1.458 sum -13.535 -5.858 1.068 14.787 Atomic orbital electron populations 1.70140 1.07156 1.27403 1.29194 1.26052 0.94873 1.00922 0.93537 0.86429 0.80106 0.80603 0.79861 1.18992 1.20363 1.18991 1.19552 0.94144 0.89390 1.43547 0.89912 1.18206 0.86917 0.91856 0.86553 1.21542 0.98442 0.93467 1.20424 1.20601 0.93456 0.96398 0.95229 1.20596 0.94622 0.95450 1.28683 1.18512 0.84271 0.90287 0.89905 1.44106 1.02818 1.06686 1.84177 1.20973 0.88805 0.87852 1.00595 1.21676 0.94872 0.96826 1.03178 1.21863 0.92410 0.98745 1.03845 1.22003 0.91249 0.83669 1.04982 1.45661 1.40348 1.20942 1.06971 1.22773 1.05914 0.97280 0.92940 1.22307 1.04935 0.99697 0.91283 1.70294 1.19916 1.19295 1.12233 1.25024 1.00093 0.91330 0.93786 1.68213 1.07694 1.24324 1.25115 0.91922 0.88678 0.88929 0.89288 0.77051 0.93168 0.93135 0.90943 0.91003 0.90842 0.90769 0.88845 0.88585 0.81011 0.81515 0.78031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.88 11.46 55.55 0.64 -18.25 16 2 C 0.07 1.81 5.50 -17.34 -0.10 1.72 16 3 Si 0.91 18.58 29.56 -169.99 -5.02 13.55 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.43 -11.74 9.14 -37.74 -0.34 -12.09 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.29 8.14 6.55 -84.99 -0.56 7.58 16 10 C -0.32 -8.02 9.83 -38.65 -0.38 -8.40 16 11 C -0.03 -0.76 10.15 -39.40 -0.40 -1.16 16 12 C -0.37 -8.47 9.34 -38.87 -0.36 -8.83 16 13 C 0.41 9.93 7.65 -155.31 -1.19 8.74 16 14 N -0.74 -14.23 5.72 -60.40 -0.35 -14.58 16 15 C 0.14 2.04 4.88 -4.04 -0.02 2.02 16 16 C -0.13 -1.22 5.33 -26.74 -0.14 -1.36 16 17 C -0.13 -1.01 5.54 -26.73 -0.15 -1.16 16 18 C 0.10 0.66 6.15 -4.04 -0.02 0.64 16 19 N -0.46 -3.91 2.75 -118.58 -0.33 -4.23 16 20 C -0.06 -0.49 11.58 -16.56 -0.19 -0.68 16 21 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 22 N -0.50 -6.05 11.25 -14.66 -0.16 -6.22 16 23 C 0.18 1.74 12.56 -90.37 -1.14 0.60 16 24 N -0.53 -14.64 7.89 -10.33 -0.08 -14.72 16 25 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 26 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.09 1.82 6.68 -52.49 -0.35 1.47 16 29 H 0.39 7.47 8.59 -40.82 -0.35 7.12 16 30 H 0.05 0.73 7.92 -51.93 -0.41 0.32 16 31 H 0.05 0.73 7.92 -51.93 -0.41 0.32 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -32.53 342.40 -11.07 -43.60 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.72 Total: 8.62 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -5.20 Total: -12.94 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.28 Total: -58.00 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.53 -11.07 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.602 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds