Wall clock time and date at job start Tue Mar 31 2020 06:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00058 * 2 1 4 4 H 1.48508 * 109.47434 * 240.00077 * 3 2 1 5 5 H 1.48500 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47265 * 119.99992 * 3 2 1 7 7 C 1.40032 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.41320 * 119.99544 * 0.02562 * 7 2 1 10 10 C 1.40595 * 119.78021 * 179.97438 * 9 7 2 11 11 C 1.38342 * 119.14586 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68151 * 359.97438 * 11 10 9 13 13 C 1.39751 * 119.49546 * 0.02562 * 12 11 10 14 14 N 1.38824 * 119.59213 * 179.97438 * 13 12 11 15 15 C 1.46507 * 119.99657 * 359.97438 * 14 13 12 16 16 C 1.52992 * 109.47485 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.46840 * 180.02562 * 18 17 16 20 20 C 1.36881 * 126.40136 * 89.99703 * 19 18 17 21 21 C 1.34671 * 106.82076 * 179.97438 * 20 19 18 22 22 N 1.34127 * 108.02129 * 0.02562 * 21 20 19 23 23 C 1.30511 * 109.25181 * 359.72172 * 22 21 20 24 24 N 1.31986 * 120.82985 * 0.24511 * 13 12 11 25 25 H 0.96996 * 120.00189 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.42230 * 0.02562 * 10 9 7 27 27 H 1.07996 * 120.66211 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.25307 * 180.02562 * 12 11 10 29 29 H 0.96992 * 120.00772 * 179.97438 * 14 13 12 30 30 H 1.09002 * 109.47280 * 59.99811 * 15 14 13 31 31 H 1.09001 * 109.46702 * 300.00004 * 15 14 13 32 32 H 1.09002 * 109.47103 * 59.99596 * 16 15 14 33 33 H 1.08998 * 109.46862 * 300.00408 * 16 15 14 34 34 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 35 35 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 36 36 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 37 37 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 38 38 H 1.08002 * 126.58719 * 359.96564 * 20 19 18 39 39 H 1.07999 * 125.99048 * 180.02562 * 21 20 19 40 40 H 1.07995 * 125.64679 * 180.28977 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3009 -2.4365 -0.0016 10 6 2.0085 -3.6515 -0.0027 11 6 1.3035 -4.8417 -0.0043 12 6 -0.0821 -4.7944 -0.0043 13 6 -0.7282 -3.5552 -0.0031 14 7 -2.1156 -3.5055 -0.0036 15 6 -2.8930 -4.7473 -0.0059 16 6 -4.3862 -4.4141 -0.0066 17 6 -5.1981 -5.7109 -0.0096 18 6 -6.6914 -5.3777 -0.0109 19 7 -7.4688 -6.6194 -0.0132 20 6 -7.9010 -7.3092 1.0873 21 6 -8.5743 -8.3838 0.6340 22 7 -8.5533 -8.3515 -0.7067 23 6 -7.8975 -7.2944 -1.1014 24 7 -0.0360 -2.4315 -0.0070 25 1 -0.4850 0.8400 -0.0004 26 1 3.0885 -3.6554 -0.0023 27 1 1.8221 -5.7890 -0.0056 28 1 -0.6578 -5.7082 -0.0051 29 1 -2.5702 -2.6487 -0.0025 30 1 -2.6507 -5.3293 0.8833 31 1 -2.6499 -5.3264 -0.8967 32 1 -4.6283 -3.8323 -0.8960 33 1 -4.6296 -3.8347 0.8839 34 1 -4.9562 -6.2931 0.8796 35 1 -4.9546 -6.2900 -0.9004 36 1 -6.9353 -4.7985 0.8797 37 1 -6.9330 -4.7957 -0.9002 38 1 -7.7341 -7.0428 2.1206 39 1 -9.0481 -9.1392 1.2433 40 1 -7.7245 -7.0081 -2.1282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:36 Heat of formation + Delta-G solvation = 73.548203 kcal Electronic energy + Delta-G solvation = -20771.889810 eV Core-core repulsion = 17586.557509 eV Total energy + Delta-G solvation = -3185.332301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.88701 -40.13795 -37.76466 -36.11692 -35.12465 -33.33207 -32.22726 -30.83089 -30.27809 -28.30199 -27.24025 -24.76018 -23.49061 -22.38076 -22.22672 -22.03014 -21.62724 -19.26546 -18.30889 -17.86045 -16.74692 -16.68139 -16.46975 -16.22460 -15.84754 -15.38093 -15.02034 -14.88530 -14.69239 -14.65553 -14.16072 -13.93973 -13.80370 -13.47758 -12.93565 -12.83353 -12.74484 -12.60755 -12.57248 -12.31632 -12.10522 -11.75173 -11.71596 -11.25145 -10.92216 -10.65526 -10.53502 -9.83925 -9.45649 -9.42222 -8.29778 -8.23337 -6.48317 1.06254 1.17950 1.33524 1.41946 1.53533 1.59709 1.93206 2.25152 2.25337 2.68452 2.92329 3.75102 3.76553 3.91583 4.01223 4.03380 4.18010 4.26977 4.36414 4.40708 4.56110 4.59064 4.65303 4.67739 4.78207 4.84367 4.92225 4.99627 5.01060 5.11866 5.18794 5.28020 5.39695 5.41189 5.71108 5.85878 5.95928 6.06717 6.22755 6.32582 6.55992 6.83752 6.96204 7.17303 7.22542 8.33897 8.50872 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.002497 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.338617 B =11208.726951 C =11931.999678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.471 4.471 8 H 0.086 0.914 9 C 0.257 3.743 10 C -0.345 4.345 11 C -0.032 4.032 12 C -0.369 4.369 13 C 0.393 3.607 14 N -0.735 5.735 15 C 0.139 3.861 16 C -0.113 4.113 17 C -0.119 4.119 18 C 0.106 3.894 19 N -0.456 5.456 20 C -0.053 4.053 21 C -0.062 4.062 22 N -0.542 5.542 23 C 0.172 3.828 24 N -0.565 5.565 25 H 0.277 0.723 26 H 0.102 0.898 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.395 0.605 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.198 0.802 39 H 0.178 0.822 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 -6.544 1.182 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.503 4.503 8 H 0.104 0.896 9 C 0.130 3.870 10 C -0.368 4.368 11 C -0.056 4.056 12 C -0.395 4.395 13 C 0.152 3.848 14 N -0.370 5.370 15 C 0.014 3.986 16 C -0.151 4.151 17 C -0.158 4.158 18 C -0.016 4.016 19 N -0.138 5.138 20 C -0.186 4.186 21 C -0.209 4.209 22 N -0.261 5.261 23 C -0.111 4.111 24 N -0.288 5.288 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.229 0.771 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.215 0.785 39 H 0.195 0.805 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -15.321 -6.298 0.665 16.579 hybrid contribution 1.223 0.519 0.534 1.432 sum -14.098 -5.780 1.199 15.284 Atomic orbital electron populations 1.70228 1.08710 1.28787 1.29548 1.26954 0.95797 1.04314 0.92550 0.85219 0.78647 0.75573 0.79938 1.18493 1.19172 1.18468 1.19915 0.94617 0.90517 1.45288 0.89596 1.18695 0.87783 0.93182 0.87329 1.21697 0.98999 0.93804 1.22265 1.21014 0.93819 0.97172 0.93570 1.20942 0.94953 0.96124 1.27473 1.18999 0.86222 0.90202 0.89398 1.44320 1.01323 1.08516 1.82874 1.21245 0.91090 0.85860 1.00370 1.21545 0.91683 0.97944 1.03961 1.21719 0.93127 0.97431 1.03478 1.22097 0.89796 0.82981 1.06709 1.45790 1.40085 1.21316 1.06608 1.23189 1.04788 0.96573 0.94080 1.22665 1.06133 1.01004 0.91115 1.70249 1.21542 1.20940 1.13387 1.25515 0.99565 0.90917 0.95056 1.68200 1.07927 1.26086 1.26581 0.91259 0.88000 0.85425 0.86580 0.77098 0.93278 0.93234 0.90144 0.90285 0.91313 0.91123 0.87332 0.86812 0.78526 0.80504 0.75738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.16 11.46 21.84 0.25 -39.91 16 2 C 0.03 1.32 5.50 85.29 0.47 1.79 16 3 Si 0.99 38.24 29.56 68.60 2.03 40.27 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 7 C -0.47 -26.21 9.14 23.46 0.21 -25.99 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.26 14.75 6.55 40.19 0.26 15.02 16 10 C -0.34 -17.77 9.83 22.87 0.22 -17.54 16 11 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 12 C -0.37 -16.62 9.34 22.73 0.21 -16.41 16 13 C 0.39 19.01 7.65 133.40 1.02 20.03 16 14 N -0.73 -27.70 5.72 -345.00 -1.97 -29.67 16 15 C 0.14 3.68 4.88 86.38 0.42 4.10 16 16 C -0.11 -1.87 5.33 30.59 0.16 -1.71 16 17 C -0.12 -1.51 5.54 30.59 0.17 -1.34 16 18 C 0.11 1.02 6.15 86.38 0.53 1.55 16 19 N -0.46 -6.75 2.75 -529.07 -1.46 -8.21 16 20 C -0.05 -0.82 11.58 83.09 0.96 0.14 16 21 C -0.06 -1.24 11.87 83.52 0.99 -0.24 16 22 N -0.54 -12.86 11.25 -200.31 -2.25 -15.11 16 23 C 0.17 3.07 12.56 180.26 2.26 5.33 16 24 N -0.57 -31.76 7.89 -186.59 -1.47 -33.23 16 25 H 0.28 13.32 8.29 -92.71 -0.77 12.55 16 26 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 27 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 28 H 0.12 4.49 6.68 -2.91 -0.02 4.47 16 29 H 0.39 14.76 8.59 -92.71 -0.80 13.96 16 30 H 0.05 1.33 7.92 -2.39 -0.02 1.31 16 31 H 0.05 1.34 7.92 -2.39 -0.02 1.32 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.23 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -72.39 342.40 3.50 -68.89 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.24 Total: 33.47 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 8.13 Total: -16.50 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -6.90 Total: -126.13 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -72.39 3.50 -68.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.438 kcal (2) G-P(sol) polarization free energy of solvation -72.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds