Wall clock time and date at job start Tue Mar 31 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81402 * 102.99655 * 2 1 4 4 H 1.09004 * 109.47233 * 304.99306 * 3 2 1 5 5 C 1.52998 * 109.47266 * 65.00121 * 3 2 1 6 6 C 1.50707 * 109.47070 * 184.99884 * 3 2 1 7 7 O 1.21282 * 119.99854 * 340.00032 * 6 3 2 8 8 N 1.34774 * 119.99916 * 159.99614 * 6 3 2 9 9 C 1.46495 * 119.99534 * 179.97438 * 8 6 3 10 10 C 1.53005 * 109.46993 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47317 * 175.45773 * 10 9 8 12 12 C 1.53002 * 115.55079 * 279.32943 * 11 10 9 13 13 N 1.46500 * 109.46720 * 294.94993 * 12 11 10 14 14 C 1.36943 * 120.00066 * 174.37269 * 13 12 11 15 15 H 1.08003 * 119.99710 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00169 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00077 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99741 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47206 * 90.00629 * 18 16 14 20 20 H 1.48505 * 109.47067 * 210.00197 * 18 16 14 21 21 H 1.48495 * 109.47713 * 330.00435 * 18 16 14 22 22 C 1.52994 * 117.50103 * 133.61874 * 11 10 9 23 23 C 1.52997 * 60.00072 * 252.50921 * 22 11 10 24 24 H 1.08999 * 109.47146 * 60.00585 * 1 2 3 25 25 H 1.09003 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47326 * 299.99854 * 1 2 3 27 27 H 1.09007 * 109.46904 * 299.99649 * 5 3 2 28 28 H 1.08998 * 109.47155 * 180.02562 * 5 3 2 29 29 H 1.08991 * 109.47313 * 59.99572 * 5 3 2 30 30 H 0.96995 * 119.99812 * 0.02562 * 8 6 3 31 31 H 1.08995 * 109.47545 * 300.00259 * 9 8 6 32 32 H 1.09000 * 109.47330 * 60.00808 * 9 8 6 33 33 H 1.08998 * 109.47238 * 295.45717 * 10 9 8 34 34 H 1.09006 * 109.47012 * 55.45921 * 10 9 8 35 35 H 1.08996 * 109.47347 * 54.94423 * 12 11 10 36 36 H 1.08999 * 109.47152 * 174.95047 * 12 11 10 37 37 H 0.96999 * 120.00654 * 354.37274 * 13 12 11 38 38 H 0.96997 * 120.00081 * 179.97438 * 17 16 14 39 39 H 1.09008 * 117.49471 * 359.97438 * 22 11 10 40 40 H 1.08996 * 117.50422 * 145.01678 * 22 11 10 41 41 H 1.08992 * 117.49906 * 252.50866 * 23 22 11 42 42 H 1.09009 * 117.49895 * 107.48366 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7427 2.4016 1.3073 6 6 3.7142 1.9387 -0.1238 7 8 4.4552 1.0201 0.1556 8 7 4.2252 3.1125 -0.5451 9 6 5.6757 3.2790 -0.6649 10 6 5.9877 4.6932 -1.1585 11 6 7.5029 4.9047 -1.1756 12 6 8.1370 5.2458 0.1744 13 7 7.6423 6.5469 0.6313 14 6 7.9827 7.0109 1.8739 15 1 8.6154 6.4174 2.5173 16 6 7.5144 8.2440 2.3067 17 7 6.7429 8.9670 1.5228 18 14 7.9781 8.8764 4.0020 19 1 9.2336 9.6642 3.9102 20 1 6.8886 9.7406 4.5230 21 1 8.1808 7.7275 4.9207 22 6 8.1129 5.5439 -2.4247 23 6 8.3240 4.0543 -2.1469 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.6634 2.2779 1.3969 28 1 1.9875 3.4638 1.3071 29 1 2.2353 1.9150 2.1491 30 1 3.6326 3.8472 -0.7682 31 1 6.1410 3.1234 0.3085 32 1 6.0676 2.5511 -1.3754 33 1 5.5915 4.8222 -2.1657 34 1 5.5268 5.4211 -0.4907 35 1 7.8727 4.4802 0.9038 36 1 9.2209 5.2865 0.0668 37 1 7.0738 7.0798 0.0537 38 1 6.4154 9.8284 1.8253 39 1 7.4347 5.8133 -3.2345 40 1 8.9660 6.2078 -2.2849 41 1 9.3160 3.7381 -1.8243 42 1 7.7847 3.3440 -2.7737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163540607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:18 Heat of formation + Delta-G solvation = -11.368133 kcal Electronic energy + Delta-G solvation = -20390.405193 eV Core-core repulsion = 17304.541844 eV Total energy + Delta-G solvation = -3085.863349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81446 -38.26801 -34.87161 -33.92974 -33.52237 -30.78140 -29.86752 -29.03969 -26.03135 -25.06919 -23.15980 -22.74329 -21.75096 -20.65744 -18.60934 -17.38388 -17.06619 -16.82699 -15.68358 -15.54905 -15.10524 -14.60576 -14.51077 -14.38009 -14.04696 -13.82829 -13.54200 -13.21537 -13.02837 -12.73565 -12.54958 -12.26638 -12.17702 -11.99844 -11.89966 -11.44713 -11.12922 -10.96707 -10.84937 -10.60508 -10.16247 -10.09072 -9.92404 -9.89962 -9.64941 -9.33175 -9.05801 -8.85452 -7.89394 -6.90741 -5.76916 -3.04620 1.22788 2.25596 2.56313 3.11486 3.43286 3.48860 3.50173 4.05271 4.44999 4.55256 4.61139 4.71836 4.81641 4.85362 5.00953 5.08293 5.14568 5.21901 5.31092 5.34091 5.44490 5.52718 5.58525 5.66550 5.75157 5.80324 5.91459 6.14665 6.17840 6.22269 6.40479 6.43093 6.46030 6.54756 6.76034 6.84267 7.40258 7.70479 8.12221 8.42387 9.54053 10.12314 10.48183 11.45947 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.003573 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.394748 B = 7833.950755 C = 9123.461279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.190 6.190 3 C -0.093 4.093 4 H 0.106 0.894 5 C -0.144 4.144 6 C 0.532 3.468 7 O -0.521 6.521 8 N -0.721 5.721 9 C 0.126 3.874 10 C -0.091 4.091 11 C -0.119 4.119 12 C 0.188 3.812 13 N -0.727 5.727 14 C -0.237 4.237 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.164 4.164 23 C -0.177 4.177 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.401 0.599 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.017 0.983 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 -13.540 -7.890 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.036 5.964 3 C -0.225 4.225 4 H 0.125 0.875 5 C -0.203 4.203 6 C 0.315 3.685 7 O -0.396 6.396 8 N -0.373 5.373 9 C 0.003 3.997 10 C -0.128 4.128 11 C -0.120 4.120 12 C 0.060 3.940 13 N -0.372 5.372 14 C -0.368 4.368 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.201 4.201 23 C -0.215 4.215 24 H 0.094 0.906 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.235 0.765 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.479 -15.080 -7.517 19.843 hybrid contribution -1.124 2.140 0.581 2.486 sum -11.603 -12.940 -6.936 18.713 Atomic orbital electron populations 1.23550 0.95843 1.06590 1.04914 1.87446 1.04665 1.06430 1.97866 1.23353 0.97504 0.98149 1.03483 0.87535 1.22010 1.01769 1.01568 0.94965 1.19590 0.88616 0.82941 0.77362 1.90749 1.60392 1.40091 1.48377 1.45940 1.08973 1.14371 1.67972 1.21403 0.78748 0.97314 1.02265 1.21255 0.94379 0.95734 1.01481 1.21560 0.93178 1.04232 0.93075 1.20181 0.94934 0.89107 0.89765 1.42293 1.60385 1.17234 1.17238 1.19245 1.24799 1.00537 0.92229 0.91269 1.24709 1.00475 0.97409 0.98393 1.69659 1.38778 1.13432 1.36425 0.86207 0.77455 0.78564 0.84098 1.21772 1.21814 1.20769 1.22964 1.03348 0.95209 0.98622 1.22978 1.01389 0.93955 1.03185 0.90590 0.87866 0.90340 0.91355 0.90718 0.90462 0.76502 0.90810 0.91594 0.91938 0.89413 0.95551 0.96542 0.78175 0.93609 0.89332 0.88585 0.88914 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 10.45 101.05 1.06 0.11 16 2 S -0.19 -2.13 21.04 -107.50 -2.26 -4.39 16 3 C -0.09 -0.95 3.18 -27.88 -0.09 -1.04 16 4 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 5 C -0.14 -1.29 9.08 37.16 0.34 -0.95 16 6 C 0.53 7.23 7.00 -10.98 -0.08 7.16 16 7 O -0.52 -9.26 16.04 5.56 0.09 -9.17 16 8 N -0.72 -8.76 5.56 -60.29 -0.33 -9.10 16 9 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 10 C -0.09 -1.28 5.24 -26.73 -0.14 -1.42 16 11 C -0.12 -1.89 1.52 -154.51 -0.23 -2.12 16 12 C 0.19 3.77 6.10 -4.04 -0.02 3.75 16 13 N -0.73 -18.04 5.30 -59.91 -0.32 -18.36 16 14 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 C -0.16 -2.39 9.90 -26.74 -0.26 -2.66 16 23 C -0.18 -2.36 9.57 -26.73 -0.26 -2.62 16 24 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 25 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.08 0.46 7.14 -51.92 -0.37 0.09 16 27 H 0.07 0.47 6.92 -51.93 -0.36 0.11 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.40 3.82 8.47 -40.82 -0.35 3.48 16 31 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 32 H 0.07 0.91 7.80 -51.93 -0.41 0.51 16 33 H 0.06 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.09 1.44 7.64 -51.93 -0.40 1.05 16 35 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 36 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 37 H 0.38 9.96 7.46 -40.82 -0.30 9.66 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.09 1.16 8.08 -51.92 -0.42 0.74 16 40 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.06 7.98 -51.92 -0.41 0.64 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -32.80 360.94 -8.80 -41.60 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.15 Total: 9.01 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 0.04 Total: -5.30 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.07 Total: -54.53 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -2.26 Total: -4.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.80 -8.80 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163540607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.231 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds