Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37966 * 119.42260 * 2 1 4 4 C 1.39206 * 120.42782 * 359.97438 * 3 2 1 5 5 C 1.37789 * 119.85240 * 180.02562 * 4 3 2 6 6 C 1.38816 * 120.64909 * 359.95912 * 5 4 3 7 7 C 1.36577 * 120.53639 * 0.02562 * 6 5 4 8 8 C 1.40011 * 119.81657 * 359.97438 * 7 6 5 9 9 C 1.46381 * 120.66298 * 179.97438 * 8 7 6 10 10 C 1.36063 * 118.67888 * 180.27693 * 9 8 7 11 11 N 1.39801 * 120.23036 * 179.72872 * 10 9 8 12 12 C 1.46502 * 120.00250 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.47240 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47118 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47205 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99867 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00168 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00119 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00008 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47422 * 90.00470 * 19 17 15 21 21 H 1.48504 * 109.47525 * 210.00643 * 19 17 15 22 22 H 1.48501 * 109.47264 * 330.00331 * 19 17 15 23 23 C 1.34486 * 119.42412 * 180.02562 * 2 1 3 24 24 O 1.21866 * 119.56076 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.47061 * 89.99470 * 1 2 3 26 26 H 1.08993 * 109.47053 * 210.00015 * 1 2 3 27 27 H 1.09000 * 109.46938 * 329.99717 * 1 2 3 28 28 H 1.08004 * 120.07185 * 0.07329 * 4 3 2 29 29 H 1.07998 * 119.67957 * 179.97438 * 5 4 3 30 30 H 1.07992 * 119.73179 * 180.02562 * 6 5 4 31 31 H 1.08001 * 120.08587 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.65613 * 359.97438 * 9 8 7 33 33 H 0.96997 * 119.99584 * 179.97438 * 11 10 9 34 34 H 1.08995 * 109.46885 * 300.00431 * 12 11 10 35 35 H 1.09001 * 109.46690 * 60.00195 * 12 11 10 36 36 H 1.08998 * 109.47209 * 300.00444 * 13 12 11 37 37 H 1.09000 * 109.46512 * 60.00115 * 13 12 11 38 38 H 1.09007 * 109.47131 * 299.99924 * 14 13 12 39 39 H 1.08996 * 109.47562 * 59.99757 * 14 13 12 40 40 H 0.97001 * 120.00164 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.2017 0.0000 4 6 1.4436 2.4054 -0.0005 5 6 2.1325 3.5988 -0.0011 6 6 3.5205 3.6145 -0.0002 7 6 4.2278 2.4461 0.0006 8 6 3.5491 1.2215 0.0012 9 6 4.2885 -0.0418 0.0015 10 6 3.5882 -1.2083 -0.0037 11 7 4.2615 -2.4335 -0.0092 12 6 5.7262 -2.4645 -0.0100 13 6 6.2055 -3.9174 -0.0171 14 6 7.7351 -3.9498 -0.0173 15 6 8.2073 -5.3808 -0.0249 16 1 7.4883 -6.1867 -0.0288 17 6 9.5572 -5.6614 -0.0259 18 7 9.9693 -6.9103 -0.0330 19 14 10.8009 -4.2676 -0.0184 20 1 11.1301 -3.9053 1.3836 21 1 12.0354 -4.7018 -0.7204 22 1 10.2259 -3.0875 -0.7127 23 6 2.1257 -1.1714 -0.0005 24 8 1.4977 -2.2158 -0.0015 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 0.3635 2.4040 0.0002 29 1 1.5872 4.5310 -0.0019 30 1 4.0454 4.5583 -0.0002 31 1 5.3076 2.4669 0.0017 32 1 5.3685 -0.0477 0.0010 33 1 3.7588 -3.2630 -0.0126 34 1 6.0998 -1.9546 -0.8979 35 1 6.1006 -1.9623 0.8820 36 1 5.8318 -4.4277 0.8706 37 1 5.8310 -4.4191 -0.9094 38 1 8.1093 -3.4394 -0.9048 39 1 8.1093 -3.4481 0.8751 40 1 10.9190 -7.1077 -0.0333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = 3.738741 kcal Electronic energy + Delta-G solvation = -21406.243194 eV Core-core repulsion = 18185.590976 eV Total energy + Delta-G solvation = -3220.652218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43550 -38.84226 -37.20628 -35.85791 -34.34885 -32.86896 -31.48793 -30.31626 -28.96859 -27.70843 -26.74698 -23.81638 -23.26201 -22.36034 -21.62784 -20.36617 -18.67439 -18.24869 -17.13969 -16.76699 -16.26789 -15.91203 -15.30427 -14.98460 -14.94363 -14.66070 -14.49492 -14.09339 -13.59885 -13.47571 -13.15112 -12.89793 -12.71411 -12.52815 -12.52457 -11.96398 -11.70956 -11.37336 -11.17335 -11.06734 -10.72203 -10.70823 -10.31788 -10.06010 -9.87656 -9.73108 -9.38465 -9.25253 -8.57693 -8.38529 -7.15107 -6.07660 -4.06674 0.58715 1.05105 1.75644 2.29977 2.95782 3.28327 3.35949 3.38381 3.48977 3.82023 4.18592 4.40723 4.41754 4.61230 4.79398 4.86098 4.97307 5.06226 5.11908 5.25803 5.30196 5.36986 5.42618 5.51394 5.55406 5.70830 5.81433 5.89999 6.00340 6.18438 6.32524 6.38309 6.39542 6.41895 6.58726 6.73936 6.90851 7.17522 7.23007 7.32417 7.68226 7.73519 7.79740 8.49243 8.96733 9.53909 11.05743 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.003204 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.770708 B = 8736.567816 C = 9885.276512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.516 5.516 3 C 0.137 3.863 4 C -0.151 4.151 5 C -0.100 4.100 6 C -0.139 4.139 7 C -0.082 4.082 8 C -0.055 4.055 9 C -0.194 4.194 10 C 0.139 3.861 11 N -0.716 5.716 12 C 0.119 3.881 13 C -0.114 4.114 14 C -0.009 4.009 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.536 3.464 24 O -0.531 6.531 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.408 0.592 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.620 23.318 0.142 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.235 5.235 3 C 0.038 3.962 4 C -0.171 4.171 5 C -0.119 4.119 6 C -0.157 4.157 7 C -0.101 4.101 8 C -0.059 4.059 9 C -0.226 4.226 10 C 0.029 3.971 11 N -0.342 5.342 12 C -0.004 4.004 13 C -0.152 4.152 14 C -0.047 4.047 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.190 1.190 23 C 0.329 3.671 24 O -0.410 6.410 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.243 0.757 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.684 22.449 0.137 28.578 hybrid contribution 0.598 0.327 0.011 0.681 sum -17.086 22.776 0.148 28.473 Atomic orbital electron populations 1.22019 0.77257 1.04602 1.03482 1.44783 1.08155 1.04720 1.65831 1.17876 0.91168 0.85284 1.01884 1.20755 0.99732 0.90610 1.06019 1.20928 0.94343 0.97145 0.99487 1.20770 0.94146 0.98249 1.02579 1.20825 1.00034 0.90635 0.98628 1.18378 0.89936 0.94070 1.03480 1.21476 0.99695 0.88594 1.12786 1.19400 0.89563 0.88357 0.99740 1.44824 1.06461 1.04438 1.78447 1.21740 0.77416 1.00225 1.00985 1.21689 0.99276 0.92157 1.02073 1.19492 0.90384 0.98290 0.96531 1.21102 0.92789 0.91100 1.51108 0.90998 1.25039 0.98537 0.95456 0.94488 1.69914 1.15300 1.18008 1.50913 0.86759 0.80879 0.83003 0.78523 1.20246 1.21354 1.18953 1.17968 0.87849 0.83056 0.78238 1.90903 1.68886 1.30850 1.50314 0.91052 0.89088 0.89721 0.85320 0.85750 0.85846 0.85133 0.84220 0.75650 0.92058 0.92059 0.91989 0.91959 0.96334 0.96765 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 9.82 59.85 0.59 1.15 16 2 N -0.52 -6.10 3.04 -122.41 -0.37 -6.47 16 3 C 0.14 1.51 6.53 -83.83 -0.55 0.97 16 4 C -0.15 -1.26 9.18 -39.39 -0.36 -1.62 16 5 C -0.10 -0.74 10.01 -39.53 -0.40 -1.14 16 6 C -0.14 -1.09 9.97 -39.97 -0.40 -1.49 16 7 C -0.08 -0.77 9.77 -39.52 -0.39 -1.16 16 8 C -0.06 -0.64 5.87 -105.05 -0.62 -1.26 16 9 C -0.19 -2.51 9.31 -37.09 -0.35 -2.85 16 10 C 0.14 2.03 6.83 -81.77 -0.56 1.47 16 11 N -0.72 -10.85 5.73 -57.19 -0.33 -11.17 16 12 C 0.12 1.86 4.92 -4.04 -0.02 1.84 16 13 C -0.11 -2.16 5.27 -26.74 -0.14 -2.30 16 14 C -0.01 -0.21 4.04 -27.89 -0.11 -0.32 16 15 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 16 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 19 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 23 C 0.54 7.86 7.59 -13.15 -0.10 7.76 16 24 O -0.53 -8.96 15.96 5.04 0.08 -8.88 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.82 7.35 -51.93 -0.38 0.44 16 27 H 0.08 0.47 6.13 -51.93 -0.32 0.15 16 28 H 0.13 0.76 6.11 -52.48 -0.32 0.44 16 29 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 30 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.14 1.67 6.74 -52.49 -0.35 1.32 16 33 H 0.41 6.29 7.99 -40.82 -0.33 5.97 16 34 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 35 H 0.06 0.92 7.95 -51.93 -0.41 0.50 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 39 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -32.79 331.05 -8.77 -41.56 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.42 Total: 2.52 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.83 Total: -12.23 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.07 Total: -44.68 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.79 -8.77 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.296 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds