Wall clock time and date at job start Tue Mar 31 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37966 * 119.42260 * 2 1 4 4 C 1.39206 * 120.42782 * 359.97438 * 3 2 1 5 5 C 1.37789 * 119.85240 * 180.02562 * 4 3 2 6 6 C 1.38816 * 120.64909 * 359.95912 * 5 4 3 7 7 C 1.36577 * 120.53639 * 0.02562 * 6 5 4 8 8 C 1.40011 * 119.81657 * 359.97438 * 7 6 5 9 9 C 1.46381 * 120.66298 * 179.97438 * 8 7 6 10 10 C 1.36063 * 118.67888 * 180.27693 * 9 8 7 11 11 N 1.39801 * 120.23036 * 179.72872 * 10 9 8 12 12 C 1.46502 * 120.00250 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.47240 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47118 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47205 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99867 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00168 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00119 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00008 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47422 * 90.00470 * 19 17 15 21 21 H 1.48504 * 109.47525 * 210.00643 * 19 17 15 22 22 H 1.48501 * 109.47264 * 330.00331 * 19 17 15 23 23 C 1.34486 * 119.42412 * 180.02562 * 2 1 3 24 24 O 1.21866 * 119.56076 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.47061 * 89.99470 * 1 2 3 26 26 H 1.08993 * 109.47053 * 210.00015 * 1 2 3 27 27 H 1.09000 * 109.46938 * 329.99717 * 1 2 3 28 28 H 1.08004 * 120.07185 * 0.07329 * 4 3 2 29 29 H 1.07998 * 119.67957 * 179.97438 * 5 4 3 30 30 H 1.07992 * 119.73179 * 180.02562 * 6 5 4 31 31 H 1.08001 * 120.08587 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.65613 * 359.97438 * 9 8 7 33 33 H 0.96997 * 119.99584 * 179.97438 * 11 10 9 34 34 H 1.08995 * 109.46885 * 300.00431 * 12 11 10 35 35 H 1.09001 * 109.46690 * 60.00195 * 12 11 10 36 36 H 1.08998 * 109.47209 * 300.00444 * 13 12 11 37 37 H 1.09000 * 109.46512 * 60.00115 * 13 12 11 38 38 H 1.09007 * 109.47131 * 299.99924 * 14 13 12 39 39 H 1.08996 * 109.47562 * 59.99757 * 14 13 12 40 40 H 0.97001 * 120.00164 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.2017 0.0000 4 6 1.4436 2.4054 -0.0005 5 6 2.1325 3.5988 -0.0011 6 6 3.5205 3.6145 -0.0002 7 6 4.2278 2.4461 0.0006 8 6 3.5491 1.2215 0.0012 9 6 4.2885 -0.0418 0.0015 10 6 3.5882 -1.2083 -0.0037 11 7 4.2615 -2.4335 -0.0092 12 6 5.7262 -2.4645 -0.0100 13 6 6.2055 -3.9174 -0.0171 14 6 7.7351 -3.9498 -0.0173 15 6 8.2073 -5.3808 -0.0249 16 1 7.4883 -6.1867 -0.0288 17 6 9.5572 -5.6614 -0.0259 18 7 9.9693 -6.9103 -0.0330 19 14 10.8009 -4.2676 -0.0184 20 1 11.1301 -3.9053 1.3836 21 1 12.0354 -4.7018 -0.7204 22 1 10.2259 -3.0875 -0.7127 23 6 2.1257 -1.1714 -0.0005 24 8 1.4977 -2.2158 -0.0015 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 0.3635 2.4040 0.0002 29 1 1.5872 4.5310 -0.0019 30 1 4.0454 4.5583 -0.0002 31 1 5.3076 2.4669 0.0017 32 1 5.3685 -0.0477 0.0010 33 1 3.7588 -3.2630 -0.0126 34 1 6.0998 -1.9546 -0.8979 35 1 6.1006 -1.9623 0.8820 36 1 5.8318 -4.4277 0.8706 37 1 5.8310 -4.4191 -0.9094 38 1 8.1093 -3.4394 -0.9048 39 1 8.1093 -3.4481 0.8751 40 1 10.9190 -7.1077 -0.0333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:57 Heat of formation + Delta-G solvation = -16.818258 kcal Electronic energy + Delta-G solvation = -21407.134612 eV Core-core repulsion = 18185.590976 eV Total energy + Delta-G solvation = -3221.543636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.31835 -39.67989 -38.34483 -36.74131 -35.90187 -34.39292 -32.98721 -31.05940 -30.08270 -28.61208 -28.10416 -25.20769 -24.12467 -23.31301 -22.71037 -21.92217 -19.56274 -19.18516 -18.85568 -18.05839 -17.18749 -16.81082 -16.48116 -16.32155 -16.03682 -15.83286 -15.39963 -15.19219 -14.75566 -14.52804 -14.39108 -14.08869 -13.87425 -13.75287 -13.67502 -13.15535 -12.84721 -12.68225 -12.40954 -12.08009 -12.02891 -11.81273 -11.73114 -11.48084 -11.46303 -11.34479 -11.24461 -10.76770 -10.22539 -9.14463 -8.29630 -8.14815 -6.35170 -0.25192 0.29429 0.91905 1.38195 1.40559 1.43982 1.52563 2.07322 2.37389 2.44170 3.05343 3.05946 3.26719 3.71092 3.89958 4.04040 4.12842 4.17949 4.18183 4.31532 4.45936 4.46236 4.51770 4.58626 4.73409 4.78292 4.85986 4.88217 4.92474 4.99956 5.05821 5.22458 5.42754 5.48764 5.54298 5.61821 5.63632 5.68180 5.82124 6.08002 6.21006 6.27912 6.58433 6.73138 6.76516 7.29650 8.87492 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.003204 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.770708 B = 8736.567816 C = 9885.276512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.513 5.513 3 C 0.119 3.881 4 C -0.152 4.152 5 C -0.088 4.088 6 C -0.137 4.137 7 C -0.086 4.086 8 C -0.089 4.089 9 C -0.170 4.170 10 C 0.103 3.897 11 N -0.729 5.729 12 C 0.136 3.864 13 C -0.105 4.105 14 C -0.006 4.006 15 C -0.538 4.538 16 H 0.027 0.973 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.957 3.043 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.239 1.239 23 C 0.524 3.476 24 O -0.572 6.572 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.828 28.576 0.155 33.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.230 5.230 3 C 0.020 3.980 4 C -0.172 4.172 5 C -0.107 4.107 6 C -0.156 4.156 7 C -0.105 4.105 8 C -0.092 4.092 9 C -0.201 4.201 10 C -0.004 4.004 11 N -0.356 5.356 12 C 0.013 3.987 13 C -0.143 4.143 14 C -0.044 4.044 15 C -0.576 4.576 16 H 0.045 0.955 17 C -0.197 4.197 18 N -0.595 5.595 19 Si 0.779 3.221 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.162 1.162 23 C 0.318 3.682 24 O -0.455 6.455 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.136 0.864 28 H 0.172 0.828 29 H 0.176 0.824 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.236 0.764 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.933 27.788 0.149 33.073 hybrid contribution 0.560 -1.134 0.007 1.265 sum -17.373 26.654 0.157 31.816 Atomic orbital electron populations 1.22271 0.75469 1.05605 1.04560 1.44899 1.09387 1.04308 1.64384 1.18248 0.91393 0.85738 1.02589 1.21113 1.01166 0.89777 1.05153 1.21417 0.94461 0.98056 0.96781 1.21180 0.94658 0.98775 1.00947 1.21083 1.00964 0.90349 0.98080 1.18591 0.90550 0.94259 1.05783 1.21790 1.00196 0.88834 1.09247 1.19496 0.89839 0.88412 1.02681 1.44616 1.05936 1.04650 1.80435 1.21441 0.78018 0.97381 1.01849 1.21475 0.96863 0.94767 1.01178 1.19425 0.92859 0.94787 0.97318 1.21504 0.92421 0.92949 1.50700 0.95505 1.26122 1.01098 0.98528 0.93932 1.70087 1.15993 1.20859 1.52602 0.85565 0.77453 0.79738 0.79332 1.18995 1.21206 1.16175 1.18112 0.88078 0.83524 0.78503 1.90863 1.69501 1.32171 1.52931 0.89921 0.90380 0.86413 0.82751 0.82391 0.83085 0.83808 0.83387 0.76441 0.91171 0.91096 0.92988 0.92998 0.95323 0.95438 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 9.82 127.77 1.25 2.19 16 2 N -0.51 -11.77 3.04 -659.51 -2.00 -13.77 16 3 C 0.12 2.39 6.53 39.00 0.25 2.64 16 4 C -0.15 -1.95 9.18 22.40 0.21 -1.75 16 5 C -0.09 -0.87 10.01 22.30 0.22 -0.64 16 6 C -0.14 -1.52 9.97 22.02 0.22 -1.30 16 7 C -0.09 -1.34 9.77 22.31 0.22 -1.12 16 8 C -0.09 -1.88 5.87 -20.14 -0.12 -2.00 16 9 C -0.17 -4.22 9.31 23.88 0.22 -3.99 16 10 C 0.10 3.05 6.83 39.46 0.27 3.32 16 11 N -0.73 -22.76 5.73 -334.86 -1.92 -24.68 16 12 C 0.14 4.18 4.92 86.38 0.42 4.61 16 13 C -0.10 -4.05 5.27 30.59 0.16 -3.88 16 14 C -0.01 -0.27 4.04 29.85 0.12 -0.15 16 15 C -0.54 -31.34 9.66 25.60 0.25 -31.09 16 16 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 17 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 18 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 19 Si 0.96 43.66 27.47 68.60 1.88 45.54 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 23 C 0.52 15.86 7.59 86.38 0.66 16.52 16 24 O -0.57 -20.49 15.96 -4.88 -0.08 -20.57 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.43 7.35 -2.39 -0.02 1.41 16 27 H 0.12 0.95 6.13 -2.39 -0.01 0.94 16 28 H 0.16 1.11 6.11 -2.91 -0.02 1.09 16 29 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 30 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 31 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.15 3.29 6.74 -2.91 -0.02 3.27 16 33 H 0.40 13.26 7.99 -92.71 -0.74 12.52 16 34 H 0.07 2.01 7.95 -2.39 -0.02 1.99 16 35 H 0.07 2.02 7.95 -2.39 -0.02 2.00 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.03 1.25 7.20 -2.38 -0.02 1.23 16 39 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -75.07 331.05 3.26 -71.80 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.26 Total: 18.36 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.82 Total: -16.22 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -3.62 Total: -98.92 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.08 Total: -20.57 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -75.07 3.26 -71.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.986 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds