Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 125.06717 * 2 1 4 4 C 1.34210 * 109.89296 * 179.97438 * 3 2 1 5 5 C 1.46495 * 106.99009 * 359.49832 * 4 3 2 6 6 C 1.37696 * 125.06190 * 179.28310 * 2 1 3 7 7 C 1.39179 * 133.38188 * 359.92398 * 6 2 1 8 8 C 1.37759 * 120.02405 * 180.02562 * 7 6 2 9 9 C 1.38755 * 120.71945 * 359.97438 * 8 7 6 10 10 C 1.38169 * 120.31522 * 0.02562 * 9 8 7 11 11 O 1.35875 * 120.22276 * 180.02562 * 10 9 8 12 12 C 1.42902 * 116.99846 * 2.80431 * 11 10 9 13 13 H 1.09001 * 110.64242 * 33.39547 * 12 11 10 14 14 C 1.55163 * 110.71913 * 156.53264 * 12 11 10 15 15 C 1.54901 * 101.58285 * 154.04248 * 14 12 11 16 16 N 1.47433 * 104.83233 * 322.99264 * 15 14 12 17 17 C 1.36938 * 125.64808 * 204.09537 * 16 15 14 18 18 H 1.07996 * 120.00088 * 163.75216 * 17 16 15 19 19 C 1.38807 * 119.99844 * 343.74844 * 17 16 15 20 20 N 1.31619 * 120.00229 * 331.66184 * 19 17 16 21 21 Si 1.86801 * 119.99938 * 151.93684 * 19 17 16 22 22 H 1.48500 * 109.47271 * 269.72535 * 21 19 17 23 23 H 1.48503 * 109.46938 * 29.72327 * 21 19 17 24 24 H 1.48502 * 109.47145 * 149.72615 * 21 19 17 25 25 C 1.47017 * 108.70149 * 24.35518 * 16 15 14 26 26 H 1.09002 * 109.47409 * 270.72017 * 1 2 3 27 27 H 1.09003 * 109.46921 * 30.71468 * 1 2 3 28 28 H 1.08997 * 109.47550 * 150.71231 * 1 2 3 29 29 H 1.07996 * 125.05342 * 359.46217 * 3 2 1 30 30 H 1.07998 * 126.50657 * 179.51904 * 4 3 2 31 31 H 1.07997 * 119.99273 * 0.06659 * 7 6 2 32 32 H 1.08000 * 119.64348 * 179.97438 * 8 7 6 33 33 H 1.07994 * 119.84473 * 179.97438 * 9 8 7 34 34 H 1.09003 * 111.00007 * 35.96811 * 14 12 11 35 35 H 1.09000 * 110.99910 * 272.11929 * 14 12 11 36 36 H 1.08997 * 110.37027 * 204.15563 * 15 14 12 37 37 H 1.09000 * 110.37111 * 81.82603 * 15 14 12 38 38 H 0.97004 * 119.99936 * 354.99449 * 20 19 17 39 39 H 1.08991 * 109.88453 * 118.13373 * 25 16 15 40 40 H 1.09003 * 109.88187 * 239.29745 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2518 1.1208 0.0000 4 6 3.5471 0.7695 0.0006 5 6 3.5935 -0.6947 0.0132 6 6 2.2561 -1.1270 0.0141 7 6 1.9772 -2.4905 0.0325 8 6 3.0077 -3.4046 0.0441 9 6 4.3296 -2.9828 0.0370 10 6 4.6313 -1.6346 0.0188 11 8 5.9264 -1.2237 0.0114 12 6 6.9294 -2.2404 -0.0390 13 1 6.5834 -3.0927 -0.6237 14 6 8.2533 -1.6771 -0.6201 15 6 9.3004 -2.6241 0.0172 16 7 8.7917 -2.8901 1.3752 17 6 9.5492 -3.2686 2.4513 18 1 9.1468 -3.1878 3.4502 19 6 10.8344 -3.7562 2.2582 20 7 11.1426 -4.3734 1.1372 21 14 12.1244 -3.5435 3.5924 22 1 12.8508 -2.2659 3.3794 23 1 11.4627 -3.5209 4.9216 24 1 13.0853 -4.6744 3.5368 25 6 7.3355 -2.6876 1.3811 26 1 -0.3634 0.0129 1.0276 27 1 -0.3633 0.8835 -0.5249 28 1 -0.3634 -0.8963 -0.5027 29 1 1.8846 2.1363 -0.0083 30 1 4.3944 1.4391 -0.0066 31 1 0.9527 -2.8320 0.0371 32 1 2.7843 -4.4612 0.0587 33 1 5.1264 -3.7117 0.0467 34 1 8.4128 -0.6470 -0.3013 35 1 8.2668 -1.7546 -1.7073 36 1 10.2737 -2.1359 0.0657 37 1 9.3683 -3.5519 -0.5508 38 1 10.4549 -4.5518 0.4769 39 1 6.8326 -3.6204 1.6361 40 1 7.0719 -1.9131 2.1013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229039521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = 56.568209 kcal Electronic energy + Delta-G solvation = -22088.900108 eV Core-core repulsion = 18870.538748 eV Total energy + Delta-G solvation = -3218.361360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33014 -39.36752 -36.99430 -35.75144 -32.90896 -32.34110 -29.67215 -29.26475 -28.67754 -27.38642 -26.30502 -24.32991 -22.50237 -21.98608 -20.72446 -20.21794 -19.70351 -17.78748 -17.55911 -16.72016 -16.13725 -15.52191 -15.22760 -14.96149 -14.82959 -13.94797 -13.85722 -13.63931 -13.40950 -13.13531 -12.79961 -12.74197 -12.65763 -12.44960 -12.24321 -11.70886 -11.43327 -11.18339 -11.02284 -10.81984 -10.64346 -10.49267 -10.28095 -10.03610 -9.97641 -9.52865 -9.05651 -8.40313 -8.22352 -7.28462 -6.94672 -6.10390 -3.13715 1.26869 1.65307 2.68078 2.72404 3.48573 3.53977 3.56405 3.72505 3.95437 4.52665 4.60281 4.72604 4.77378 4.89941 5.06366 5.09432 5.12490 5.19447 5.24966 5.37888 5.41872 5.49788 5.52217 5.65039 5.70164 5.92574 6.00134 6.10556 6.19286 6.31942 6.36725 6.55484 6.59981 6.62152 6.70901 6.77343 6.92415 7.00073 7.12419 7.26484 7.76160 7.81339 8.49014 9.01777 9.81683 10.35228 11.23259 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.003393 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.477852 B = 8249.320544 C = 8396.630565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.492 5.492 3 C 0.027 3.973 4 C -0.173 4.173 5 C -0.143 4.143 6 C 0.133 3.867 7 C -0.182 4.182 8 C -0.050 4.050 9 C -0.250 4.250 10 C 0.194 3.806 11 O -0.298 6.298 12 C 0.069 3.931 13 H 0.080 0.920 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.600 5.600 17 C -0.337 4.337 18 H 0.066 0.934 19 C -0.025 4.025 20 N -0.918 5.918 21 Si 1.069 2.931 22 H -0.293 1.293 23 H -0.292 1.292 24 H -0.290 1.290 25 C 0.120 3.880 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.166 0.834 30 H 0.148 0.852 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.030 0.970 38 H 0.269 0.731 39 H 0.028 0.972 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.131 8.210 -5.234 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.177 5.177 3 C -0.096 4.096 4 C -0.198 4.198 5 C -0.148 4.148 6 C 0.026 3.974 7 C -0.203 4.203 8 C -0.070 4.070 9 C -0.270 4.270 10 C 0.147 3.853 11 O -0.210 6.210 12 C 0.013 3.987 13 H 0.098 0.902 14 C -0.166 4.166 15 C 0.019 3.981 16 N -0.328 5.328 17 C -0.464 4.464 18 H 0.084 0.916 19 C -0.227 4.227 20 N -0.559 5.559 21 Si 0.899 3.101 22 H -0.220 1.220 23 H -0.218 1.218 24 H -0.216 1.216 25 C -0.006 4.006 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.184 0.816 30 H 0.165 0.835 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.750 8.183 -4.756 21.901 hybrid contribution -1.790 -0.018 -0.293 1.814 sum -21.540 8.166 -5.049 23.583 Atomic orbital electron populations 1.21874 0.77359 1.03932 1.02756 1.43775 1.05659 1.04286 1.63931 1.21702 0.90341 0.90864 1.06730 1.21648 0.95901 0.92698 1.09542 1.18339 0.90399 0.93313 1.12709 1.17923 0.89036 0.88188 1.02222 1.19761 0.99208 0.88924 1.12442 1.20540 0.91323 0.98765 0.96343 1.21052 0.97926 0.94317 1.13667 1.18432 0.83213 0.91409 0.92289 1.86125 1.12033 1.36045 1.86772 1.23617 0.86780 0.89852 0.98449 0.90198 1.22958 0.92997 1.01204 0.99398 1.21565 0.95509 0.94940 0.86069 1.44459 1.00382 1.80595 1.07405 1.19793 0.98470 1.42478 0.85672 0.91572 1.25777 0.98294 0.95999 1.02622 1.70769 1.38163 1.36077 1.10850 0.83450 0.75832 0.76405 0.74402 1.22003 1.21849 1.21612 1.21722 0.87366 0.98073 0.93471 0.91529 0.90105 0.90250 0.81638 0.83477 0.86671 0.85652 0.85011 0.90369 0.91038 0.92295 0.95258 0.91992 0.95384 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 11.02 59.85 0.66 1.19 16 2 N -0.49 -5.43 3.18 -121.79 -0.39 -5.82 16 3 C 0.03 0.29 11.29 -16.69 -0.19 0.10 16 4 C -0.17 -2.36 11.08 -37.68 -0.42 -2.78 16 5 C -0.14 -2.28 6.32 -105.03 -0.66 -2.94 16 6 C 0.13 1.84 6.80 -84.01 -0.57 1.27 16 7 C -0.18 -2.29 9.94 -39.41 -0.39 -2.68 16 8 C -0.05 -0.67 10.01 -39.57 -0.40 -1.06 16 9 C -0.25 -3.91 8.95 -39.42 -0.35 -4.26 16 10 C 0.19 3.32 6.71 -38.94 -0.26 3.06 16 11 O -0.30 -5.53 9.89 -19.35 -0.19 -5.73 16 12 C 0.07 1.32 2.74 -24.89 -0.07 1.25 16 13 H 0.08 1.41 6.15 -51.93 -0.32 1.09 16 14 C -0.13 -2.42 6.81 -24.58 -0.17 -2.59 16 15 C 0.14 3.42 5.29 -2.53 -0.01 3.41 16 16 N -0.60 -15.81 3.30 -170.08 -0.56 -16.37 16 17 C -0.34 -9.79 10.02 -15.06 -0.15 -9.94 16 18 H 0.07 1.93 7.97 -52.49 -0.42 1.51 16 19 C -0.03 -0.74 5.08 -17.43 -0.09 -0.82 16 20 N -0.92 -27.95 12.95 55.49 0.72 -27.23 16 21 Si 1.07 25.84 30.00 -169.99 -5.10 20.74 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 C 0.12 2.69 6.87 -3.06 -0.02 2.67 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 2.07 5.70 -52.49 -0.30 1.77 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.50 7.92 -51.93 -0.41 1.09 16 37 H 0.03 0.72 6.81 -51.93 -0.35 0.37 16 38 H 0.27 8.15 6.00 -40.82 -0.25 7.91 16 39 H 0.03 0.64 7.94 -51.93 -0.41 0.22 16 40 H 0.04 0.86 8.06 -51.93 -0.42 0.44 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -34.01 329.02 -9.13 -43.14 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.48 Total: 0.44 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.09 Total: -14.13 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.23 Total: -49.42 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.19 Total: -5.73 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.10 Total: 20.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.01 -9.13 -43.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229039521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.709 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds