Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 125.06717 * 2 1 4 4 C 1.34210 * 109.89296 * 179.97438 * 3 2 1 5 5 C 1.46495 * 106.99009 * 359.49832 * 4 3 2 6 6 C 1.37696 * 125.06190 * 179.28310 * 2 1 3 7 7 C 1.39179 * 133.38188 * 359.92398 * 6 2 1 8 8 C 1.37759 * 120.02405 * 180.02562 * 7 6 2 9 9 C 1.38755 * 120.71945 * 359.97438 * 8 7 6 10 10 C 1.38169 * 120.31522 * 0.02562 * 9 8 7 11 11 O 1.35875 * 120.22276 * 180.02562 * 10 9 8 12 12 C 1.42902 * 116.99846 * 2.80431 * 11 10 9 13 13 H 1.09001 * 110.64242 * 33.39547 * 12 11 10 14 14 C 1.55163 * 110.71913 * 156.53264 * 12 11 10 15 15 C 1.54901 * 101.58285 * 154.04248 * 14 12 11 16 16 N 1.47433 * 104.83233 * 322.99264 * 15 14 12 17 17 C 1.36938 * 125.64808 * 204.09537 * 16 15 14 18 18 H 1.07996 * 120.00088 * 163.75216 * 17 16 15 19 19 C 1.38807 * 119.99844 * 343.74844 * 17 16 15 20 20 N 1.31619 * 120.00229 * 331.66184 * 19 17 16 21 21 Si 1.86801 * 119.99938 * 151.93684 * 19 17 16 22 22 H 1.48500 * 109.47271 * 269.72535 * 21 19 17 23 23 H 1.48503 * 109.46938 * 29.72327 * 21 19 17 24 24 H 1.48502 * 109.47145 * 149.72615 * 21 19 17 25 25 C 1.47017 * 108.70149 * 24.35518 * 16 15 14 26 26 H 1.09002 * 109.47409 * 270.72017 * 1 2 3 27 27 H 1.09003 * 109.46921 * 30.71468 * 1 2 3 28 28 H 1.08997 * 109.47550 * 150.71231 * 1 2 3 29 29 H 1.07996 * 125.05342 * 359.46217 * 3 2 1 30 30 H 1.07998 * 126.50657 * 179.51904 * 4 3 2 31 31 H 1.07997 * 119.99273 * 0.06659 * 7 6 2 32 32 H 1.08000 * 119.64348 * 179.97438 * 8 7 6 33 33 H 1.07994 * 119.84473 * 179.97438 * 9 8 7 34 34 H 1.09003 * 111.00007 * 35.96811 * 14 12 11 35 35 H 1.09000 * 110.99910 * 272.11929 * 14 12 11 36 36 H 1.08997 * 110.37027 * 204.15563 * 15 14 12 37 37 H 1.09000 * 110.37111 * 81.82603 * 15 14 12 38 38 H 0.97004 * 119.99936 * 354.99449 * 20 19 17 39 39 H 1.08991 * 109.88453 * 118.13373 * 25 16 15 40 40 H 1.09003 * 109.88187 * 239.29745 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2518 1.1208 0.0000 4 6 3.5471 0.7695 0.0006 5 6 3.5935 -0.6947 0.0132 6 6 2.2561 -1.1270 0.0141 7 6 1.9772 -2.4905 0.0325 8 6 3.0077 -3.4046 0.0441 9 6 4.3296 -2.9828 0.0370 10 6 4.6313 -1.6346 0.0188 11 8 5.9264 -1.2237 0.0114 12 6 6.9294 -2.2404 -0.0390 13 1 6.5834 -3.0927 -0.6237 14 6 8.2533 -1.6771 -0.6201 15 6 9.3004 -2.6241 0.0172 16 7 8.7917 -2.8901 1.3752 17 6 9.5492 -3.2686 2.4513 18 1 9.1468 -3.1878 3.4502 19 6 10.8344 -3.7562 2.2582 20 7 11.1426 -4.3734 1.1372 21 14 12.1244 -3.5435 3.5924 22 1 12.8508 -2.2659 3.3794 23 1 11.4627 -3.5209 4.9216 24 1 13.0853 -4.6744 3.5368 25 6 7.3355 -2.6876 1.3811 26 1 -0.3634 0.0129 1.0276 27 1 -0.3633 0.8835 -0.5249 28 1 -0.3634 -0.8963 -0.5027 29 1 1.8846 2.1363 -0.0083 30 1 4.3944 1.4391 -0.0066 31 1 0.9527 -2.8320 0.0371 32 1 2.7843 -4.4612 0.0587 33 1 5.1264 -3.7117 0.0467 34 1 8.4128 -0.6470 -0.3013 35 1 8.2668 -1.7546 -1.7073 36 1 10.2737 -2.1359 0.0657 37 1 9.3683 -3.5519 -0.5508 38 1 10.4549 -4.5518 0.4769 39 1 6.8326 -3.6204 1.6361 40 1 7.0719 -1.9131 2.1013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229039521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = 36.819758 kcal Electronic energy + Delta-G solvation = -22089.756465 eV Core-core repulsion = 18870.538748 eV Total energy + Delta-G solvation = -3219.217717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.30927 -40.75052 -38.59376 -36.99528 -34.55451 -33.58002 -31.26310 -30.56662 -29.95086 -28.97456 -27.09085 -26.36454 -23.65655 -23.13877 -22.30270 -21.77565 -20.95193 -19.67347 -18.88272 -17.86342 -17.24307 -16.70417 -16.49051 -16.25596 -16.00292 -15.72397 -15.31921 -15.17060 -15.11300 -14.34221 -14.12167 -13.94682 -13.64159 -13.56613 -13.25545 -13.07036 -12.76970 -12.71788 -12.55479 -12.37974 -12.30658 -12.13331 -11.89105 -11.71044 -11.58903 -11.58460 -10.58993 -10.13204 -9.23540 -9.11293 -8.40814 -8.31289 -5.40905 0.22377 0.56330 1.56774 1.64717 1.78853 1.82723 1.84661 2.18350 2.61524 2.85612 3.12168 3.42781 3.53550 3.75205 3.79198 3.87518 3.91322 4.00344 4.10796 4.28200 4.30437 4.39144 4.42986 4.49717 4.59476 4.72121 4.75556 4.75941 4.81158 4.85308 4.94350 4.95851 5.11686 5.16547 5.38298 5.54341 5.58783 5.63751 5.74386 6.12659 6.25181 6.43789 6.49798 6.81599 7.62296 8.18531 8.93109 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.003393 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.477852 B = 8249.320544 C = 8396.630565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.488 5.488 3 C 0.057 3.943 4 C -0.220 4.220 5 C -0.170 4.170 6 C 0.116 3.884 7 C -0.167 4.167 8 C -0.063 4.063 9 C -0.259 4.259 10 C 0.154 3.846 11 O -0.309 6.309 12 C 0.087 3.913 13 H 0.094 0.906 14 C -0.112 4.112 15 C 0.148 3.852 16 N -0.622 5.622 17 C -0.355 4.355 18 H 0.056 0.944 19 C -0.072 4.072 20 N -0.940 5.940 21 Si 1.122 2.878 22 H -0.282 1.282 23 H -0.274 1.274 24 H -0.289 1.289 25 C 0.121 3.879 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.210 0.790 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.033 0.967 37 H 0.019 0.981 38 H 0.257 0.743 39 H 0.023 0.977 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.997 9.300 -5.464 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.171 5.171 3 C -0.068 4.068 4 C -0.244 4.244 5 C -0.175 4.175 6 C 0.008 3.992 7 C -0.187 4.187 8 C -0.082 4.082 9 C -0.279 4.279 10 C 0.108 3.892 11 O -0.222 6.222 12 C 0.031 3.969 13 H 0.111 0.889 14 C -0.150 4.150 15 C 0.023 3.977 16 N -0.351 5.351 17 C -0.483 4.483 18 H 0.074 0.926 19 C -0.269 4.269 20 N -0.582 5.582 21 Si 0.945 3.055 22 H -0.208 1.208 23 H -0.199 1.199 24 H -0.215 1.215 25 C -0.005 4.005 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.227 0.773 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -22.684 9.283 -4.995 25.014 hybrid contribution -1.132 -0.300 -0.217 1.191 sum -23.816 8.983 -5.212 25.982 Atomic orbital electron populations 1.22259 0.74264 1.05943 1.04226 1.44164 1.07451 1.03321 1.62204 1.22326 0.89324 0.92496 1.02638 1.21813 0.97575 0.91936 1.13124 1.18782 0.91216 0.94526 1.13019 1.18197 0.88809 0.89521 1.02656 1.20159 1.00632 0.88317 1.09639 1.20855 0.90406 1.00446 0.96479 1.21144 0.99072 0.93644 1.14009 1.18751 0.82643 0.92566 0.95235 1.86079 1.12871 1.35600 1.87680 1.23289 0.87226 0.90557 0.95865 0.88863 1.22837 0.91290 0.99808 1.01078 1.21492 0.95748 0.95248 0.85238 1.44713 1.02036 1.80477 1.07848 1.20025 0.99435 1.42515 0.86310 0.92565 1.27239 1.00296 0.95265 1.04077 1.70878 1.37840 1.37875 1.11605 0.82774 0.73504 0.76565 0.72643 1.20836 1.19910 1.21477 1.21747 0.85494 0.97374 0.95873 0.90272 0.87344 0.89164 0.77298 0.83858 0.83247 0.83015 0.85966 0.90352 0.87569 0.94852 0.96277 0.93200 0.95870 0.95969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 11.02 127.77 1.41 2.01 16 2 N -0.49 -9.16 3.18 -539.25 -1.72 -10.88 16 3 C 0.06 1.06 11.29 82.98 0.94 1.99 16 4 C -0.22 -5.91 11.08 23.50 0.26 -5.64 16 5 C -0.17 -5.42 6.32 -20.13 -0.13 -5.55 16 6 C 0.12 2.99 6.80 39.01 0.27 3.26 16 7 C -0.17 -3.78 9.94 22.38 0.22 -3.55 16 8 C -0.06 -1.57 10.01 22.28 0.22 -1.35 16 9 C -0.26 -8.21 8.95 22.38 0.20 -8.01 16 10 C 0.15 5.41 6.71 22.69 0.15 5.56 16 11 O -0.31 -11.87 9.89 -92.14 -0.91 -12.79 16 12 C 0.09 3.40 2.74 31.79 0.09 3.49 16 13 H 0.09 3.36 6.15 -2.39 -0.01 3.34 16 14 C -0.11 -4.30 6.81 31.99 0.22 -4.09 16 15 C 0.15 7.25 5.29 86.85 0.46 7.71 16 16 N -0.62 -34.08 3.30 -692.00 -2.28 -36.36 16 17 C -0.35 -21.30 10.02 84.03 0.84 -20.46 16 18 H 0.06 3.40 7.97 -2.91 -0.02 3.37 16 19 C -0.07 -4.29 5.08 84.86 0.43 -3.86 16 20 N -0.94 -58.72 12.95 21.65 0.28 -58.43 16 21 Si 1.12 52.69 30.00 68.60 2.06 54.75 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 C 0.12 5.67 6.87 86.73 0.60 6.27 16 26 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 29 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 31 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.12 3.97 5.70 -2.91 -0.02 3.95 16 34 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.03 1.77 7.92 -2.39 -0.02 1.75 16 37 H 0.02 0.98 6.81 -2.39 -0.02 0.97 16 38 H 0.26 16.22 6.00 -92.71 -0.56 15.66 16 39 H 0.02 1.10 7.94 -2.39 -0.02 1.08 16 40 H 0.02 1.10 8.06 -2.39 -0.02 1.08 16 Total: -1.00 -77.07 329.02 4.85 -72.21 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.25 Total: 13.72 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 6.18 Total: -22.22 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.72 Total: -105.67 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.91 Total: -12.79 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 2.06 Total: 54.75 kcal Total: -77.07 4.85 -72.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229039521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.035 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds