Wall clock time and date at job start Tue Mar 31 2020 06:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99925 * 2 1 4 4 H 1.48498 * 109.46998 * 239.99938 * 3 2 1 5 5 H 1.48497 * 109.47063 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47327 * 119.99929 * 3 2 1 7 7 C 1.37878 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99829 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50309 * 59.92501 * 9 7 2 11 11 C 1.53120 * 109.50402 * 299.79997 * 9 7 2 12 12 C 1.53120 * 109.15972 * 182.40395 * 11 9 7 13 13 C 1.53034 * 109.27663 * 57.65936 * 12 11 9 14 14 N 1.46850 * 109.52564 * 300.81923 * 13 12 11 15 15 C 1.46895 * 110.99945 * 185.83944 * 14 13 12 16 16 C 1.50701 * 109.47508 * 45.79090 * 15 14 13 17 17 N 1.32506 * 125.17834 * 269.69595 * 16 15 14 18 18 C 1.32849 * 109.67720 * 179.82030 * 17 16 15 19 19 C 1.40657 * 132.88831 * 180.12580 * 18 17 16 20 20 C 1.36189 * 119.26292 * 180.31508 * 19 18 17 21 21 C 1.40270 * 119.62403 * 0.02562 * 20 19 18 22 22 C 1.35185 * 120.21230 * 0.02562 * 21 20 19 23 23 N 1.35933 * 120.57141 * 359.97438 * 22 21 20 24 24 N 1.31258 * 125.17993 * 89.99639 * 16 15 14 25 25 C 1.46850 * 111.19713 * 61.73898 * 14 13 12 26 26 H 0.96991 * 119.99983 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.52458 * 302.31729 * 11 9 7 28 28 H 1.09005 * 109.51651 * 62.50505 * 11 9 7 29 29 H 1.09000 * 109.49976 * 177.59581 * 12 11 9 30 30 H 1.08997 * 109.50809 * 297.71813 * 12 11 9 31 31 H 1.09007 * 109.46201 * 60.83416 * 13 12 11 32 32 H 1.09001 * 109.46285 * 180.81057 * 13 12 11 33 33 H 1.09001 * 109.46962 * 165.78905 * 15 14 13 34 34 H 1.09002 * 109.47442 * 285.78739 * 15 14 13 35 35 H 1.07998 * 120.36729 * 0.33186 * 19 18 17 36 36 H 1.08000 * 120.18625 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.89339 * 180.02562 * 21 20 19 38 38 H 1.08005 * 119.71455 * 180.02562 * 22 21 20 39 39 H 1.08995 * 109.45831 * 178.23975 * 25 14 13 40 40 H 1.08998 * 109.45719 * 58.27825 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6235 -2.5571 -0.8888 11 6 0.3737 -2.5830 1.2527 12 6 -0.3420 -3.9364 1.2753 13 6 0.6980 -5.0585 1.2390 14 7 1.5112 -4.9348 0.0224 15 6 2.4283 -6.0740 -0.1157 16 6 1.6823 -7.3552 0.1545 17 7 1.5609 -7.9322 1.3412 18 6 0.8399 -9.0421 1.2272 19 6 0.4181 -10.0094 2.1573 20 6 -0.3252 -11.0665 1.7276 21 6 -0.6570 -11.1742 0.3690 22 6 -0.2412 -10.2345 -0.5094 23 7 0.5011 -9.1760 -0.0896 24 7 1.0587 -8.0725 -0.7507 25 6 2.2449 -3.6629 0.0012 26 1 -0.4850 0.8400 -0.0004 27 1 0.9971 -2.4856 2.1414 28 1 -0.3643 -1.7809 1.2346 29 1 -0.9350 -4.0193 2.1860 30 1 -0.9950 -4.0174 0.4064 31 1 1.3421 -4.9852 2.1154 32 1 0.1913 -6.0235 1.2404 33 1 2.8316 -6.0950 -1.1282 34 1 3.2452 -5.9716 0.5986 35 1 0.6807 -9.9146 3.2006 36 1 -0.6566 -11.8181 2.4288 37 1 -1.2467 -12.0105 0.0236 38 1 -0.5016 -10.3252 -1.5536 39 1 2.8616 -3.6144 -0.8962 40 1 2.8816 -3.5962 0.8833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233070356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:05 Heat of formation + Delta-G solvation = 102.516095 kcal Electronic energy + Delta-G solvation = -22170.885936 eV Core-core repulsion = 18986.809777 eV Total energy + Delta-G solvation = -3184.076159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.72962 -40.06532 -38.74361 -35.76162 -34.54129 -33.79231 -32.02848 -31.60991 -30.78267 -28.22428 -26.94498 -24.66563 -24.40143 -23.66563 -23.27506 -21.58365 -20.41835 -18.92104 -18.47031 -17.90450 -17.52912 -16.94100 -16.57631 -16.25924 -15.93827 -15.58963 -15.33134 -14.99100 -14.56193 -14.30566 -13.85086 -13.69182 -13.55615 -13.37030 -13.13078 -12.93121 -12.80443 -12.57832 -12.51322 -12.27349 -12.21774 -11.87351 -11.76179 -11.43241 -11.18859 -10.96530 -10.70411 -10.48535 -10.38213 -9.31866 -9.22583 -8.06869 -6.21262 -0.23522 -0.03715 1.15416 1.43194 1.45176 1.51499 1.53328 2.42376 2.45526 2.80589 3.05050 3.11814 3.20285 3.74439 3.85427 4.06386 4.06895 4.14340 4.26121 4.30160 4.42350 4.47624 4.55540 4.62458 4.69185 4.82343 4.91238 4.95926 5.00559 5.12107 5.13114 5.21935 5.29018 5.31383 5.45791 5.47138 5.63395 5.82386 5.89279 6.06522 6.12229 6.15521 6.42319 6.90285 6.90654 7.46482 8.98285 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.043037 B = 0.003277 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.440492 B = 8542.056211 C = 8706.751436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.055 3.945 10 H -0.003 1.003 11 C -0.101 4.101 12 C -0.108 4.108 13 C 0.082 3.918 14 N -0.541 5.541 15 C 0.145 3.855 16 C 0.263 3.737 17 N -0.577 5.577 18 C 0.255 3.745 19 C -0.128 4.128 20 C -0.036 4.036 21 C -0.134 4.134 22 C 0.083 3.917 23 N -0.297 5.297 24 N -0.360 5.360 25 C 0.082 3.918 26 H 0.260 0.740 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.169 0.831 36 H 0.197 0.803 37 H 0.208 0.792 38 H 0.188 0.812 39 H 0.069 0.931 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 -26.372 3.486 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.075 0.925 9 C 0.036 3.964 10 H 0.015 0.985 11 C -0.139 4.139 12 C -0.146 4.146 13 C -0.046 4.046 14 N -0.267 5.267 15 C 0.016 3.984 16 C -0.017 4.017 17 N -0.309 5.309 18 C 0.003 3.997 19 C -0.150 4.150 20 C -0.061 4.061 21 C -0.156 4.156 22 C -0.043 4.043 23 N -0.071 5.071 24 N -0.192 5.192 25 C -0.045 4.045 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.186 0.814 36 H 0.214 0.786 37 H 0.225 0.775 38 H 0.205 0.795 39 H 0.088 0.912 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.290 -25.787 2.583 26.017 hybrid contribution 0.795 1.230 0.523 1.555 sum -1.495 -24.558 3.106 24.798 Atomic orbital electron populations 1.70040 1.07293 1.27182 1.51141 1.25757 0.95670 1.02466 0.94706 0.85621 0.78342 0.78860 0.78871 1.19549 1.21030 1.19585 1.21472 0.93166 0.91812 1.50949 0.92539 1.18573 0.92923 0.91317 0.93622 0.98484 1.21454 0.99202 0.95466 0.97770 1.21584 0.97358 0.95253 1.00434 1.21848 0.95060 0.97665 0.90018 1.62106 1.24168 1.01736 1.38674 1.20451 0.92234 0.82440 1.03307 1.24136 0.94720 0.96481 0.86379 1.70738 1.25540 1.09368 1.25265 1.22466 0.95843 0.95364 0.85999 1.20741 1.01942 0.92697 0.99593 1.21873 0.91560 0.95864 0.96834 1.21641 1.01759 0.99699 0.92512 1.22371 0.93283 0.84898 1.03795 1.47900 1.34045 1.17033 1.08159 1.78438 1.22519 0.98967 1.19315 1.22076 0.95515 0.87443 0.99500 0.93054 0.95486 0.92029 0.91541 0.93664 0.95424 0.92543 0.87526 0.91429 0.81402 0.78562 0.77477 0.79487 0.91229 0.95676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.76 11.36 21.45 0.24 -54.51 16 2 C 0.01 0.72 5.30 84.65 0.45 1.17 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -30.48 8.56 25.60 0.22 -30.26 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 9 C 0.05 2.92 2.26 -11.49 -0.03 2.89 16 10 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 11 C -0.10 -5.16 5.03 30.67 0.15 -5.00 16 12 C -0.11 -4.76 6.09 30.65 0.19 -4.58 16 13 C 0.08 3.38 4.94 86.32 0.43 3.81 16 14 N -0.54 -22.51 4.80 -900.93 -4.32 -26.83 16 15 C 0.15 5.19 5.90 85.56 0.51 5.69 16 16 C 0.26 9.47 5.86 138.70 0.81 10.29 16 17 N -0.58 -19.95 10.32 -186.03 -1.92 -21.87 16 18 C 0.25 7.03 7.88 134.10 1.06 8.09 16 19 C -0.13 -2.09 10.11 22.38 0.23 -1.86 16 20 C -0.04 -0.25 10.07 22.29 0.22 -0.03 16 21 C -0.13 -0.88 9.99 22.06 0.22 -0.66 16 22 C 0.08 1.29 11.20 83.35 0.93 2.22 16 23 N -0.30 -8.07 3.90 -192.95 -0.75 -8.82 16 24 N -0.36 -12.60 12.78 -51.47 -0.66 -13.26 16 25 C 0.08 3.68 4.65 86.33 0.40 4.08 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 3.51 6.16 -2.38 -0.01 3.49 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.06 2.32 5.97 -2.39 -0.01 2.31 16 33 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.07 2.29 8.08 -2.39 -0.02 2.27 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.20 -0.44 8.06 -2.91 -0.02 -0.46 16 37 H 0.21 -0.62 8.06 -2.91 -0.02 -0.65 16 38 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.07 3.00 8.12 -2.39 -0.02 2.98 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.94 325.48 1.43 -75.51 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.03 Total: 7.30 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 5.79 Total: -4.15 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -7.41 Total: -125.30 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -76.94 1.43 -75.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233070356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.026 kcal (2) G-P(sol) polarization free energy of solvation -76.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds