Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46978 * 2 1 4 4 C 1.46908 * 110.99855 * 175.42773 * 3 2 1 5 5 C 1.53000 * 110.01429 * 56.97587 * 4 3 2 6 6 N 1.46499 * 109.47336 * 54.22860 * 5 4 3 7 7 C 1.34771 * 120.00181 * 175.11675 * 6 5 4 8 8 O 1.21288 * 120.00040 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00233 * 179.72417 * 7 6 5 10 10 S 1.81000 * 109.47118 * 180.27542 * 9 7 6 11 11 C 1.76207 * 99.99781 * 180.02562 * 10 9 7 12 12 H 1.07995 * 119.99772 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99628 * 180.02562 * 11 10 9 14 14 N 1.31624 * 120.00273 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99543 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47349 * 60.00194 * 15 13 11 17 17 H 1.48507 * 109.46857 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47053 * 299.99868 * 15 13 11 19 19 C 1.54265 * 110.06946 * 178.39486 * 4 3 2 20 20 C 1.54886 * 104.19576 * 95.69706 * 19 4 3 21 21 C 1.54885 * 102.74980 * 37.94048 * 20 19 4 22 22 C 1.53872 * 110.03055 * 295.58662 * 4 3 2 23 23 H 1.09000 * 109.46414 * 60.00297 * 1 2 3 24 24 H 1.08999 * 109.46475 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46619 * 300.00139 * 1 2 3 26 26 H 1.09001 * 109.47319 * 239.99749 * 2 1 3 27 27 H 1.09006 * 109.47074 * 119.99741 * 2 1 3 28 28 H 1.00896 * 111.00493 * 51.47142 * 3 2 1 29 29 H 1.08995 * 109.47226 * 294.22594 * 5 4 3 30 30 H 1.08999 * 109.46673 * 174.22728 * 5 4 3 31 31 H 0.97007 * 120.00127 * 355.11502 * 6 5 4 32 32 H 1.09000 * 109.46881 * 300.27509 * 9 7 6 33 33 H 1.09005 * 109.46628 * 60.27272 * 9 7 6 34 34 H 0.97008 * 119.99999 * 179.97438 * 14 13 11 35 35 H 1.09004 * 110.48528 * 214.37324 * 19 4 3 36 36 H 1.09001 * 110.48710 * 337.01475 * 19 4 3 37 37 H 1.09000 * 110.75551 * 279.62396 * 20 19 4 38 38 H 1.09001 * 110.75480 * 156.25162 * 20 19 4 39 39 H 1.09004 * 110.49040 * 203.37921 * 21 20 19 40 40 H 1.09000 * 110.48717 * 80.73506 * 21 20 19 41 41 H 1.09002 * 110.03248 * 359.94586 * 22 4 3 42 42 H 1.08993 * 110.03593 * 121.38205 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4841 1.4256 0.1093 5 6 4.1168 0.6252 -1.0308 6 7 3.6056 1.1147 -2.3135 7 6 4.0985 0.6228 -3.4674 8 8 4.9656 -0.2249 -3.4439 9 6 3.5683 1.1218 -4.7868 10 16 4.4176 0.2702 -6.1393 11 6 3.6262 1.0250 -7.5210 12 1 2.8644 1.7741 -7.3639 13 6 3.9822 0.6567 -8.8110 14 7 4.9111 -0.2559 -9.0023 15 14 3.1437 1.4575 -10.2757 16 1 3.3819 2.9229 -10.2423 17 1 3.6993 0.8947 -11.5327 18 1 1.6839 1.1918 -10.2165 19 6 3.9778 2.8866 0.0669 20 6 4.1268 3.2806 1.5574 21 6 4.6752 1.9829 2.2008 22 6 3.9275 0.8510 1.4661 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 1.5871 1.9215 0.7369 29 1 3.8649 -0.4292 -0.9179 30 1 5.1998 0.7452 -1.0016 31 1 2.9123 1.7930 -2.3324 32 1 2.4983 0.9228 -4.8471 33 1 3.7433 2.1948 -4.8662 34 1 5.1596 -0.5135 -9.9040 35 1 4.9395 2.9496 -0.4423 36 1 3.2424 3.5236 -0.4245 37 1 3.1600 3.5453 1.9854 38 1 4.8381 4.0987 1.6714 39 1 4.4488 1.9604 3.2669 40 1 5.7495 1.8999 2.0362 41 1 3.0561 0.5428 2.0438 42 1 4.5934 0.0019 1.3124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753660377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = -54.685219 kcal Electronic energy + Delta-G solvation = -20736.687970 eV Core-core repulsion = 17648.946251 eV Total energy + Delta-G solvation = -3087.741719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15381 -38.52019 -35.17057 -33.97353 -32.38473 -30.78571 -29.35108 -29.10564 -27.36298 -25.45901 -24.42438 -22.40649 -20.98717 -20.07385 -19.43438 -17.73683 -16.59459 -16.41803 -15.93196 -15.33558 -15.03290 -14.98055 -14.76231 -14.40718 -14.04157 -13.81208 -13.54775 -13.03167 -12.86397 -12.57648 -12.46746 -12.16113 -11.86875 -11.70359 -11.46434 -11.35197 -11.27645 -11.10031 -11.00445 -10.99676 -10.87233 -10.78076 -10.71364 -9.77204 -9.29288 -9.01874 -8.73899 -8.64142 -8.17647 -6.44283 -6.17114 -3.87062 3.12342 3.22536 3.26767 3.30700 3.36087 3.72701 3.99530 4.22776 4.25318 4.30242 4.53394 4.89851 4.91564 5.00578 5.09000 5.10836 5.17821 5.22247 5.30442 5.32002 5.37045 5.52597 5.54721 5.58085 5.65897 5.70187 5.77322 5.78806 5.85470 5.93796 5.95382 5.99480 6.03219 6.03670 6.23497 6.71360 6.87733 7.13046 7.63816 7.93550 8.39701 8.76313 9.28037 10.90276 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.025654 B = 0.003280 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.206230 B = 8533.883574 C = 8855.474782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 N -0.674 5.674 4 C 0.101 3.899 5 C 0.138 3.862 6 N -0.725 5.725 7 C 0.529 3.471 8 O -0.525 6.525 9 C -0.151 4.151 10 S -0.062 6.062 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.869 5.869 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.150 4.150 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.031 0.969 28 H 0.341 0.659 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.405 0.595 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 5.805 23.654 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 N -0.306 5.306 4 C 0.010 3.990 5 C 0.013 3.987 6 N -0.380 5.380 7 C 0.315 3.685 8 O -0.400 6.400 9 C -0.302 4.302 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.504 5.504 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.190 4.190 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.160 0.840 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.241 0.759 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.711 4.317 22.865 23.741 hybrid contribution -1.769 1.475 0.022 2.303 sum -6.480 5.793 22.887 24.482 Atomic orbital electron populations 1.21773 0.94975 1.01874 1.02196 1.22026 0.95428 0.89642 1.01108 1.60636 1.04386 1.12857 1.52714 1.21853 0.87923 0.95953 0.93305 1.21348 0.98094 0.97195 0.82044 1.45838 1.42933 1.44689 1.04508 1.20308 0.81765 0.81445 0.84989 1.90691 1.30684 1.31334 1.87325 1.23506 1.04729 1.04836 0.97096 1.85367 1.51395 1.53111 0.93639 1.22843 1.25970 1.27292 0.92229 0.91000 1.24983 0.95109 0.95050 0.98428 1.70012 1.28801 1.29165 1.22411 0.86235 0.79487 0.79403 0.80431 1.19949 1.20852 1.19948 1.22478 1.01942 0.94216 0.96594 1.22522 1.00923 0.97392 0.95568 1.22333 1.00148 0.94500 0.99101 1.22868 1.00770 0.99114 0.96214 0.91641 0.92185 0.93153 0.90282 0.95079 0.84047 0.92234 0.91198 0.75928 0.89336 0.89374 0.92185 0.90519 0.90287 0.91649 0.91369 0.91848 0.91347 0.91467 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.13 37.16 0.38 -0.79 16 2 C 0.05 0.41 5.59 -3.82 -0.02 0.39 16 3 N -0.67 -5.53 5.40 -98.82 -0.53 -6.07 16 4 C 0.10 0.88 0.49 -130.48 -0.06 0.82 16 5 C 0.14 1.70 3.60 -4.04 -0.01 1.68 16 6 N -0.72 -10.26 5.24 -60.30 -0.32 -10.57 16 7 C 0.53 10.24 7.85 -10.99 -0.09 10.15 16 8 O -0.53 -12.29 15.86 5.55 0.09 -12.20 16 9 C -0.15 -3.16 6.16 36.01 0.22 -2.93 16 10 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 11 C -0.54 -15.51 9.50 30.94 0.29 -15.22 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 15 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.11 -0.94 5.79 -25.07 -0.15 -1.09 16 20 C -0.13 -0.85 6.91 -24.74 -0.17 -1.02 16 21 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 22 C -0.15 -1.15 5.53 -25.61 -0.14 -1.29 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.88 6.70 -51.93 -0.35 0.53 16 27 H 0.03 0.26 6.50 -51.93 -0.34 -0.08 16 28 H 0.34 2.38 8.67 -39.29 -0.34 2.03 16 29 H 0.06 0.79 6.85 -51.93 -0.36 0.43 16 30 H 0.07 0.93 8.01 -51.93 -0.42 0.52 16 31 H 0.41 5.02 7.99 -40.82 -0.33 4.69 16 32 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 33 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 34 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.08 0.72 7.77 -51.93 -0.40 0.32 16 36 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.49 6.72 -51.93 -0.35 0.14 16 42 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -33.28 349.35 -9.06 -42.34 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.04 Total: 2.60 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.02 Total: -8.29 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.12 Total: -42.44 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.28 -9.06 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753660377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.342 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds