Wall clock time and date at job start Tue Mar 31 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47328 * 2 1 4 4 N 1.46501 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00276 * 275.65775 * 4 3 2 6 6 H 1.07993 * 120.00060 * 33.99926 * 5 4 3 7 7 C 1.38813 * 119.99964 * 213.99908 * 5 4 3 8 8 N 1.31624 * 120.00008 * 22.92525 * 7 5 4 9 9 Si 1.86800 * 120.00186 * 202.91780 * 7 5 4 10 10 H 1.48498 * 109.46878 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46884 * 119.99976 * 9 7 5 12 12 H 1.48503 * 109.47329 * 240.00384 * 9 7 5 13 13 C 1.46505 * 119.99870 * 95.65943 * 4 3 2 14 14 C 1.50705 * 109.46828 * 270.00252 * 13 4 3 15 15 C 1.38278 * 119.92897 * 269.72460 * 14 13 4 16 16 C 1.38124 * 120.06387 * 179.72352 * 15 14 13 17 17 C 1.38837 * 119.92978 * 0.57301 * 16 15 14 18 18 N 1.40194 * 120.06254 * 179.72232 * 17 16 15 19 19 C 1.34733 * 126.84579 * 359.69198 * 18 17 16 20 20 N 1.30847 * 108.03331 * 179.89148 * 19 18 17 21 21 C 1.33262 * 109.84171 * 0.37879 * 20 19 18 22 22 N 1.30747 * 109.00242 * 359.76396 * 21 20 19 23 23 C 1.38833 * 119.87109 * 359.70113 * 17 16 15 24 24 C 1.38122 * 119.92755 * 0.02562 * 23 17 16 25 25 H 1.08999 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47136 * 300.00528 * 1 2 3 27 27 H 1.09006 * 109.46644 * 59.99821 * 1 2 3 28 28 H 1.09000 * 109.47528 * 239.99789 * 2 1 3 29 29 H 1.09006 * 109.46644 * 120.00179 * 2 1 3 30 30 H 1.09005 * 109.47560 * 59.99849 * 3 2 1 31 31 H 1.09006 * 109.47404 * 299.99713 * 3 2 1 32 32 H 0.96997 * 119.99904 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47074 * 29.99695 * 13 4 3 34 34 H 1.08999 * 109.47381 * 149.99821 * 13 4 3 35 35 H 1.07997 * 119.97086 * 359.97438 * 15 14 13 36 36 H 1.08005 * 120.03199 * 180.28995 * 16 15 14 37 37 H 1.07993 * 125.97871 * 0.02981 * 19 18 17 38 38 H 1.08001 * 125.49419 * 179.74556 * 21 20 19 39 39 H 1.07996 * 120.03291 * 179.97438 * 23 17 16 40 40 H 1.08003 * 119.95858 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3256 1.1810 6 1 3.7875 0.7210 1.9805 7 6 5.3994 1.9845 1.3499 8 7 5.6807 3.0419 0.6184 9 14 6.6286 1.3704 2.6154 10 1 6.0771 0.1743 3.3012 11 1 7.8991 1.0094 1.9367 12 1 6.8868 2.4390 3.6138 13 6 4.2381 1.5673 -1.2617 14 6 4.4894 0.1961 -1.8344 15 6 5.6447 -0.4883 -1.5044 16 6 5.8752 -1.7475 -2.0232 17 6 4.9510 -2.3209 -2.8861 18 7 5.1849 -3.5964 -3.4189 19 6 6.2557 -4.3823 -3.1933 20 7 6.0949 -5.4903 -3.8705 21 6 4.9453 -5.4464 -4.5431 22 7 4.3524 -4.3070 -4.2989 23 6 3.7947 -1.6289 -3.2201 24 6 3.5672 -0.3724 -2.6936 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 6.5261 3.5025 0.7367 33 1 3.6493 2.1534 -1.9673 34 1 5.1904 2.0658 -1.0811 35 1 6.3657 -0.0395 -0.8372 36 1 6.7755 -2.2835 -1.7614 37 1 7.0981 -4.1410 -2.5620 38 1 4.5651 -6.2262 -5.1864 39 1 3.0743 -2.0723 -3.8914 40 1 2.6676 0.1662 -2.9527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:33 Heat of formation + Delta-G solvation = 134.399519 kcal Electronic energy + Delta-G solvation = -22303.568492 eV Core-core repulsion = 19120.874902 eV Total energy + Delta-G solvation = -3182.693590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.25276 -39.04460 -36.30719 -33.99052 -33.01535 -31.56264 -30.99995 -30.50708 -29.45216 -25.92519 -25.63080 -23.40608 -23.13795 -21.85743 -20.99318 -20.59741 -20.10670 -18.22176 -16.89440 -15.77331 -15.63452 -15.31312 -14.99665 -14.44431 -14.40983 -14.11130 -13.83460 -13.61066 -13.28804 -13.11247 -12.79078 -12.57141 -12.20077 -11.79810 -11.63241 -11.27540 -11.10685 -10.93030 -10.74937 -10.66966 -10.46905 -10.38463 -10.16204 -10.07778 -10.00981 -9.89987 -9.74372 -8.65459 -8.62314 -7.86432 -6.76245 -5.93829 -3.46104 0.93702 1.70136 2.22842 2.27580 2.86497 3.24598 3.35835 3.38812 4.10821 4.20682 4.38233 4.51608 4.86806 5.10007 5.15522 5.25934 5.42911 5.56773 5.62676 5.69210 5.77491 5.82447 5.90280 6.03520 6.16296 6.19314 6.26553 6.34681 6.40565 6.51616 6.54042 6.57626 6.64002 6.79146 6.89850 6.92029 7.09601 7.19221 7.34665 7.54273 7.70515 7.98143 8.35513 9.03114 9.66480 10.22378 11.05934 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.005174 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.495549 B = 5410.389128 C = 6542.134080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.148 3.852 4 N -0.575 5.575 5 C -0.251 4.251 6 H 0.063 0.937 7 C 0.010 3.990 8 N -0.883 5.883 9 Si 0.890 3.110 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.288 1.288 13 C 0.166 3.834 14 C -0.061 4.061 15 C -0.078 4.078 16 C -0.130 4.130 17 C 0.108 3.892 18 N -0.311 5.311 19 C 0.253 3.747 20 N -0.546 5.546 21 C 0.193 3.807 22 N -0.317 5.317 23 C -0.111 4.111 24 C -0.102 4.102 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.256 0.744 33 H 0.037 0.963 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.220 0.780 38 H 0.219 0.781 39 H 0.127 0.873 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -8.524 -7.060 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.022 3.978 4 N -0.293 5.293 5 C -0.381 4.381 6 H 0.080 0.920 7 C -0.190 4.190 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.215 1.215 13 C 0.040 3.960 14 C -0.065 4.065 15 C -0.097 4.097 16 C -0.151 4.151 17 C 0.016 3.984 18 N -0.094 5.094 19 C -0.042 4.042 20 N -0.273 5.273 21 C -0.109 4.109 22 N -0.144 5.144 23 C -0.131 4.131 24 C -0.122 4.122 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.236 0.764 38 H 0.235 0.765 39 H 0.145 0.855 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.229 -8.417 -7.323 11.377 hybrid contribution 0.814 -0.469 0.818 1.245 sum -1.415 -8.885 -6.505 11.103 Atomic orbital electron populations 1.21723 0.97366 1.00384 1.01001 1.22185 0.93763 1.00938 1.01807 1.20938 0.84814 0.93066 0.98997 1.43778 0.99465 1.84037 1.01982 1.19090 1.03019 1.23071 0.92872 0.91966 1.25054 1.00616 0.94990 0.98329 1.69979 1.23716 1.16646 1.42198 0.86420 0.81541 0.78787 0.81326 1.20013 1.21203 1.21523 1.20204 1.01324 0.88535 0.85973 1.21475 0.91952 1.00914 0.92171 1.20973 0.97956 0.92729 0.98063 1.20761 0.98649 0.97017 0.98696 1.17446 0.98316 0.82311 1.00355 1.47723 1.15113 1.13660 1.32890 1.26100 0.93064 0.86714 0.98361 1.70584 1.20086 1.22449 1.14219 1.26055 0.90301 0.95495 0.99061 1.78085 1.17547 1.07672 1.11141 1.20763 0.95846 0.95151 1.01310 1.20975 0.99420 0.94217 0.97555 0.93870 0.93245 0.93429 0.92491 0.92596 0.93593 0.94594 0.93357 0.94466 0.87100 0.84905 0.86048 0.76414 0.76518 0.85544 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.15 -2.57 6.22 -26.73 -0.17 -2.74 16 3 C 0.15 2.90 5.72 -4.05 -0.02 2.88 16 4 N -0.57 -13.00 2.44 -174.61 -0.43 -13.43 16 5 C -0.25 -6.30 9.48 -15.06 -0.14 -6.44 16 6 H 0.06 1.60 7.93 -52.49 -0.42 1.19 16 7 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 8 N -0.88 -23.27 11.31 55.49 0.63 -22.64 16 9 Si 0.89 20.02 29.61 -169.99 -5.03 14.99 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.17 3.50 5.46 -5.19 -0.03 3.47 16 14 C -0.06 -1.13 5.45 -104.59 -0.57 -1.70 16 15 C -0.08 -1.38 9.69 -39.61 -0.38 -1.76 16 16 C -0.13 -1.99 9.47 -39.40 -0.37 -2.36 16 17 C 0.11 1.70 6.70 -83.59 -0.56 1.14 16 18 N -0.31 -4.67 3.82 -11.81 -0.05 -4.72 16 19 C 0.25 3.28 11.98 -90.37 -1.08 2.20 16 20 N -0.55 -7.51 11.19 -15.75 -0.18 -7.68 16 21 C 0.19 2.47 13.03 -91.77 -1.20 1.28 16 22 N -0.32 -4.79 12.06 29.30 0.35 -4.44 16 23 C -0.11 -1.76 9.68 -39.40 -0.38 -2.14 16 24 C -0.10 -1.68 7.86 -39.61 -0.31 -1.99 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.01 6.13 -51.93 -0.32 0.69 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 31 H 0.04 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.04 0.74 7.80 -51.93 -0.40 0.34 16 34 H 0.11 2.65 5.25 -51.93 -0.27 2.38 16 35 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.12 1.47 6.81 -52.48 -0.36 1.11 16 37 H 0.22 1.98 7.10 -52.49 -0.37 1.61 16 38 H 0.22 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.13 1.93 7.74 -52.49 -0.41 1.52 16 40 H 0.12 1.86 8.02 -52.48 -0.42 1.44 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -28.54 337.05 -10.03 -38.56 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.47 Total: 4.02 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -4.94 Total: -9.73 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.33 Total: -52.91 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.54 -10.03 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.961 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds