Wall clock time and date at job start Tue Mar 31 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47328 * 2 1 4 4 N 1.46501 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00276 * 275.65775 * 4 3 2 6 6 H 1.07993 * 120.00060 * 33.99926 * 5 4 3 7 7 C 1.38813 * 119.99964 * 213.99908 * 5 4 3 8 8 N 1.31624 * 120.00008 * 22.92525 * 7 5 4 9 9 Si 1.86800 * 120.00186 * 202.91780 * 7 5 4 10 10 H 1.48498 * 109.46878 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46884 * 119.99976 * 9 7 5 12 12 H 1.48503 * 109.47329 * 240.00384 * 9 7 5 13 13 C 1.46505 * 119.99870 * 95.65943 * 4 3 2 14 14 C 1.50705 * 109.46828 * 270.00252 * 13 4 3 15 15 C 1.38278 * 119.92897 * 269.72460 * 14 13 4 16 16 C 1.38124 * 120.06387 * 179.72352 * 15 14 13 17 17 C 1.38837 * 119.92978 * 0.57301 * 16 15 14 18 18 N 1.40194 * 120.06254 * 179.72232 * 17 16 15 19 19 C 1.34733 * 126.84579 * 359.69198 * 18 17 16 20 20 N 1.30847 * 108.03331 * 179.89148 * 19 18 17 21 21 C 1.33262 * 109.84171 * 0.37879 * 20 19 18 22 22 N 1.30747 * 109.00242 * 359.76396 * 21 20 19 23 23 C 1.38833 * 119.87109 * 359.70113 * 17 16 15 24 24 C 1.38122 * 119.92755 * 0.02562 * 23 17 16 25 25 H 1.08999 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47136 * 300.00528 * 1 2 3 27 27 H 1.09006 * 109.46644 * 59.99821 * 1 2 3 28 28 H 1.09000 * 109.47528 * 239.99789 * 2 1 3 29 29 H 1.09006 * 109.46644 * 120.00179 * 2 1 3 30 30 H 1.09005 * 109.47560 * 59.99849 * 3 2 1 31 31 H 1.09006 * 109.47404 * 299.99713 * 3 2 1 32 32 H 0.96997 * 119.99904 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47074 * 29.99695 * 13 4 3 34 34 H 1.08999 * 109.47381 * 149.99821 * 13 4 3 35 35 H 1.07997 * 119.97086 * 359.97438 * 15 14 13 36 36 H 1.08005 * 120.03199 * 180.28995 * 16 15 14 37 37 H 1.07993 * 125.97871 * 0.02981 * 19 18 17 38 38 H 1.08001 * 125.49419 * 179.74556 * 21 20 19 39 39 H 1.07996 * 120.03291 * 179.97438 * 23 17 16 40 40 H 1.08003 * 119.95858 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3256 1.1810 6 1 3.7875 0.7210 1.9805 7 6 5.3994 1.9845 1.3499 8 7 5.6807 3.0419 0.6184 9 14 6.6286 1.3704 2.6154 10 1 6.0771 0.1743 3.3012 11 1 7.8991 1.0094 1.9367 12 1 6.8868 2.4390 3.6138 13 6 4.2381 1.5673 -1.2617 14 6 4.4894 0.1961 -1.8344 15 6 5.6447 -0.4883 -1.5044 16 6 5.8752 -1.7475 -2.0232 17 6 4.9510 -2.3209 -2.8861 18 7 5.1849 -3.5964 -3.4189 19 6 6.2557 -4.3823 -3.1933 20 7 6.0949 -5.4903 -3.8705 21 6 4.9453 -5.4464 -4.5431 22 7 4.3524 -4.3070 -4.2989 23 6 3.7947 -1.6289 -3.2201 24 6 3.5672 -0.3724 -2.6936 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 6.5261 3.5025 0.7367 33 1 3.6493 2.1534 -1.9673 34 1 5.1904 2.0658 -1.0811 35 1 6.3657 -0.0395 -0.8372 36 1 6.7755 -2.2835 -1.7614 37 1 7.0981 -4.1410 -2.5620 38 1 4.5651 -6.2262 -5.1864 39 1 3.0743 -2.0723 -3.8914 40 1 2.6676 0.1662 -2.9527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:32 Heat of formation + Delta-G solvation = 123.018163 kcal Electronic energy + Delta-G solvation = -22304.062025 eV Core-core repulsion = 19120.874902 eV Total energy + Delta-G solvation = -3183.187123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.29659 -40.36146 -37.88949 -35.22292 -34.61446 -32.71285 -32.57562 -31.74151 -30.82797 -27.37630 -27.28114 -24.68059 -24.34513 -23.26760 -22.10172 -21.93678 -21.63450 -19.36016 -18.68397 -17.00796 -16.84928 -16.65469 -16.40716 -15.93821 -15.91052 -15.39008 -15.10132 -14.94800 -14.82042 -14.35092 -14.14996 -13.87879 -13.31823 -13.29196 -13.17500 -12.90596 -12.67719 -12.50395 -12.24129 -12.10652 -11.94079 -11.88124 -11.68050 -11.65074 -11.23842 -11.17298 -10.95218 -10.49994 -9.92802 -9.15685 -8.58905 -7.82001 -5.39110 -0.21536 0.41435 1.05430 1.19362 1.44350 1.50650 1.58826 1.87913 2.51748 2.80966 3.25193 3.35061 3.45751 3.84056 3.84911 3.99229 4.05497 4.21670 4.27479 4.45544 4.50044 4.52295 4.65545 4.69920 4.81525 4.86637 4.98745 5.01585 5.12448 5.18986 5.25719 5.34659 5.40656 5.44736 5.45963 5.59108 5.65649 5.72580 5.77322 5.92380 6.10449 6.48162 6.95985 7.17246 7.86720 8.37873 9.14099 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.005174 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.495549 B = 5410.389128 C = 6542.134080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.590 5.590 5 C -0.256 4.256 6 H 0.049 0.951 7 C -0.026 4.026 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.295 1.295 13 C 0.172 3.828 14 C -0.078 4.078 15 C -0.091 4.091 16 C -0.123 4.123 17 C 0.115 3.885 18 N -0.329 5.329 19 C 0.259 3.741 20 N -0.562 5.562 21 C 0.201 3.799 22 N -0.349 5.349 23 C -0.113 4.113 24 C -0.095 4.095 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.253 0.747 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.155 0.845 37 H 0.254 0.746 38 H 0.254 0.746 39 H 0.134 0.866 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 -10.706 -7.991 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.021 3.979 4 N -0.309 5.309 5 C -0.387 4.387 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.555 5.555 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.222 1.222 13 C 0.046 3.954 14 C -0.081 4.081 15 C -0.110 4.110 16 C -0.143 4.143 17 C 0.023 3.977 18 N -0.112 5.112 19 C -0.036 4.036 20 N -0.289 5.289 21 C -0.101 4.101 22 N -0.175 5.175 23 C -0.133 4.133 24 C -0.114 4.114 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.173 0.827 37 H 0.269 0.731 38 H 0.270 0.730 39 H 0.152 0.848 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.364 -10.628 -8.277 13.677 hybrid contribution 0.843 0.083 0.999 1.309 sum -1.521 -10.545 -7.279 12.903 Atomic orbital electron populations 1.21662 0.94596 1.01590 1.01928 1.22003 0.96066 0.98808 1.00557 1.21024 0.83483 0.94549 0.98857 1.43948 1.00604 1.84533 1.01849 1.19130 1.03470 1.22430 0.93630 0.93319 1.25539 1.01763 0.95124 0.99946 1.70081 1.23887 1.17754 1.43811 0.85620 0.79991 0.77943 0.79404 1.19926 1.20611 1.22181 1.19983 0.99697 0.90108 0.85591 1.21164 0.93343 0.99693 0.93920 1.20903 0.97653 0.93947 0.98521 1.20928 0.99665 0.96005 0.97716 1.17533 0.97941 0.82681 0.99543 1.47740 1.16024 1.13621 1.33801 1.26902 0.93064 0.85971 0.97614 1.70665 1.20579 1.22834 1.14819 1.26846 0.89564 0.95420 0.98237 1.78068 1.18614 1.08684 1.12138 1.20862 0.96288 0.94888 1.01310 1.20981 0.99226 0.94453 0.96780 0.92503 0.92917 0.91945 0.92614 0.94889 0.95089 0.93254 0.93703 0.94144 0.90016 0.86579 0.82699 0.73058 0.72989 0.84786 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.02 16 2 C -0.13 -4.63 6.22 30.59 0.19 -4.44 16 3 C 0.15 5.77 5.72 86.38 0.49 6.26 16 4 N -0.59 -27.28 2.44 -706.33 -1.73 -29.01 16 5 C -0.26 -13.21 9.48 84.03 0.80 -12.41 16 6 H 0.05 2.59 7.93 -2.91 -0.02 2.57 16 7 C -0.03 -1.35 4.95 84.86 0.42 -0.93 16 8 N -0.91 -49.46 11.31 21.65 0.24 -49.22 16 9 Si 0.94 41.87 29.61 68.60 2.03 43.90 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 13 C 0.17 7.43 5.46 85.63 0.47 7.90 16 14 C -0.08 -2.87 5.45 -19.85 -0.11 -2.98 16 15 C -0.09 -3.19 9.69 22.25 0.22 -2.98 16 16 C -0.12 -3.50 9.47 22.39 0.21 -3.29 16 17 C 0.12 3.39 6.70 38.09 0.26 3.65 16 18 N -0.33 -9.03 3.82 -191.27 -0.73 -9.76 16 19 C 0.26 5.89 11.98 180.26 2.16 8.05 16 20 N -0.56 -13.71 11.19 -203.73 -2.28 -15.99 16 21 C 0.20 4.55 13.03 180.75 2.35 6.91 16 22 N -0.35 -9.67 12.06 -61.21 -0.74 -10.41 16 23 C -0.11 -3.43 9.68 22.38 0.22 -3.21 16 24 C -0.10 -3.03 7.86 22.25 0.17 -2.85 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.06 1.92 6.13 -2.39 -0.01 1.90 16 29 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.03 1.29 8.09 -2.38 -0.02 1.27 16 31 H 0.05 1.78 7.83 -2.38 -0.02 1.77 16 32 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 33 H 0.04 1.65 7.80 -2.39 -0.02 1.63 16 34 H 0.08 4.07 5.25 -2.39 -0.01 4.06 16 35 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.16 3.25 6.81 -2.91 -0.02 3.23 16 37 H 0.25 3.53 7.10 -2.91 -0.02 3.51 16 38 H 0.25 3.37 8.06 -2.91 -0.02 3.34 16 39 H 0.13 3.84 7.74 -2.91 -0.02 3.82 16 40 H 0.14 3.90 8.02 -2.91 -0.02 3.88 16 Total: -1.00 -62.15 337.05 6.40 -55.75 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.03 Total: 18.07 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 8.56 Total: -3.34 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -5.23 Total: -114.39 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -62.15 6.40 -55.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.771 kcal (2) G-P(sol) polarization free energy of solvation -62.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds