Wall clock time and date at job start Tue Mar 31 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47409 * 2 1 4 4 C 1.46898 * 111.00262 * 298.12660 * 3 2 1 5 5 C 1.50704 * 109.46922 * 292.92925 * 4 3 2 6 6 H 1.08000 * 119.99588 * 354.95492 * 5 4 3 7 7 C 1.37873 * 120.00256 * 174.96006 * 5 4 3 8 8 N 1.31514 * 120.00087 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00241 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47050 * 89.99731 * 9 7 5 11 11 H 1.48493 * 109.47303 * 210.00022 * 9 7 5 12 12 H 1.48502 * 109.47036 * 329.99971 * 9 7 5 13 13 C 1.46903 * 110.99762 * 62.07580 * 3 2 1 14 14 C 1.50699 * 109.47153 * 66.04274 * 13 3 2 15 15 N 1.33260 * 125.49866 * 90.02517 * 14 13 3 16 16 C 1.30853 * 109.84880 * 179.97438 * 15 14 13 17 17 N 1.34722 * 108.02744 * 359.97438 * 16 15 14 18 18 C 1.40199 * 126.84127 * 180.02562 * 17 16 15 19 19 C 1.38839 * 120.06729 * 184.75556 * 18 17 16 20 20 C 1.38121 * 119.92972 * 179.70160 * 19 18 17 21 21 C 1.38277 * 120.06893 * 0.56994 * 20 19 18 22 22 C 1.38279 * 120.13084 * 359.72217 * 21 20 19 23 23 C 1.38122 * 120.06787 * 359.97438 * 22 21 20 24 24 N 1.30747 * 125.50274 * 269.98598 * 14 13 3 25 25 H 1.09000 * 109.47143 * 299.66350 * 1 2 3 26 26 H 1.09000 * 109.46988 * 59.65871 * 1 2 3 27 27 H 1.09001 * 109.47706 * 179.66219 * 1 2 3 28 28 H 1.09004 * 109.46737 * 240.00272 * 2 1 3 29 29 H 1.08995 * 109.47012 * 120.00450 * 2 1 3 30 30 H 1.09000 * 109.47478 * 52.92679 * 4 3 2 31 31 H 1.08996 * 109.47334 * 172.93184 * 4 3 2 32 32 H 0.96996 * 120.00541 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46895 * 306.04604 * 13 3 2 34 34 H 1.08996 * 109.47268 * 186.04465 * 13 3 2 35 35 H 1.07998 * 125.98558 * 179.97438 * 16 15 14 36 36 H 1.07998 * 120.03148 * 359.96451 * 19 18 17 37 37 H 1.08005 * 119.96083 * 180.31631 * 20 19 18 38 38 H 1.07995 * 119.93284 * 179.75015 * 21 20 19 39 39 H 1.08000 * 119.96302 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.03306 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5858 2.0969 -1.2094 5 6 2.2649 1.4995 -2.4149 6 1 3.0110 0.7290 -2.2877 7 6 1.9340 1.9367 -3.6799 8 7 1.0253 2.8747 -3.8347 9 14 2.7764 1.1968 -5.1740 10 1 2.0020 0.0213 -5.6473 11 1 2.8467 2.2115 -6.2558 12 1 4.1502 0.7691 -4.8065 13 6 1.5897 2.0954 1.2118 14 6 2.2534 1.4803 2.4169 15 7 3.4264 1.8522 2.9283 16 6 3.7103 1.1145 3.9712 17 7 2.7020 0.2391 4.1496 18 6 2.6019 -0.7348 5.1532 19 6 1.5429 -1.6326 5.1481 20 6 1.4504 -2.5948 6.1347 21 6 2.4047 -2.6569 7.1335 22 6 3.4573 -1.7602 7.1446 23 6 3.5586 -0.7998 6.1571 24 7 1.7710 0.4961 3.1298 25 1 -0.3633 0.5086 0.8930 26 1 -0.3633 0.5191 -0.8869 27 1 -0.3634 -1.0276 -0.0061 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.5052 2.0037 -1.3179 31 1 1.8531 3.1503 -1.1266 32 1 0.7927 3.1825 -4.7246 33 1 0.5072 2.0174 1.3138 34 1 1.8729 3.1452 1.1373 35 1 4.5975 1.1937 4.5819 36 1 0.7946 -1.5814 4.3711 37 1 0.6296 -3.2967 6.1284 38 1 2.3281 -3.4076 7.9061 39 1 4.2014 -1.8115 7.9257 40 1 4.3811 -0.1000 6.1661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092799108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:03 Heat of formation + Delta-G solvation = 132.050787 kcal Electronic energy + Delta-G solvation = -21770.682788 eV Core-core repulsion = 18587.887349 eV Total energy + Delta-G solvation = -3182.795439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.24820 -39.42226 -37.24292 -34.26736 -32.59800 -31.72375 -30.99701 -30.16787 -29.24439 -27.56373 -25.11475 -23.96994 -23.25209 -22.74861 -21.41051 -20.48410 -19.11108 -18.40179 -16.51182 -16.19730 -15.97459 -15.57797 -15.16746 -14.92198 -14.73697 -14.38687 -13.97179 -13.85057 -13.52632 -13.20695 -12.80991 -12.27734 -12.15782 -11.97727 -11.73652 -11.49761 -11.33738 -11.11815 -11.02876 -10.71963 -10.64851 -10.49679 -10.03220 -9.92110 -9.74724 -9.64188 -9.39425 -9.19579 -8.51475 -8.39140 -7.19559 -5.98828 -3.99281 0.54354 0.95772 1.94183 2.17447 3.00805 3.34963 3.41120 3.45017 3.46352 4.16889 4.24095 4.46693 4.50612 4.66307 4.71673 4.88508 4.98605 5.12613 5.26071 5.30973 5.36951 5.60066 5.80150 5.88890 5.94080 5.98117 6.02599 6.10978 6.13230 6.23022 6.34013 6.44398 6.51618 6.57885 6.73512 6.93819 6.98484 7.31417 7.45287 7.83790 8.09027 8.17172 8.22362 8.56013 9.08225 9.64355 11.11900 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030580 B = 0.003250 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.405086 B = 8613.974895 C = 8832.300782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.061 3.939 3 N -0.527 5.527 4 C 0.190 3.810 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.137 3.863 14 C 0.262 3.738 15 N -0.515 5.515 16 C 0.253 3.747 17 N -0.343 5.343 18 C 0.163 3.837 19 C -0.115 4.115 20 C -0.096 4.096 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.140 4.140 24 N -0.310 5.310 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.007 0.993 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.218 0.782 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -9.061 22.985 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.067 4.067 3 N -0.252 5.252 4 C 0.066 3.934 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.006 3.994 14 C -0.020 4.020 15 N -0.239 5.239 16 C -0.043 4.043 17 N -0.127 5.127 18 C 0.069 3.931 19 C -0.136 4.136 20 C -0.115 4.115 21 C -0.150 4.150 22 C -0.113 4.113 23 C -0.161 4.161 24 N -0.136 5.136 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.235 0.765 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.321 -9.003 22.512 24.357 hybrid contribution -0.216 -0.418 -0.623 0.781 sum 2.104 -9.420 21.889 23.923 Atomic orbital electron populations 1.22338 0.99106 1.01043 1.01887 1.21971 0.92385 0.91102 1.01273 1.62311 1.59340 1.02097 1.01403 1.19822 0.94923 0.93795 0.84884 1.21116 1.21817 1.21263 0.89921 0.91942 1.24958 0.95327 0.95271 0.98992 1.69950 1.32025 1.29167 1.22760 0.86515 0.80010 0.78701 0.82310 1.20814 1.21290 1.19793 1.20431 0.95884 0.97995 0.85067 1.24575 0.89925 0.91205 0.96318 1.70541 1.15897 1.28115 1.09388 1.26165 0.94622 0.87669 0.95849 1.47816 1.16261 1.26482 1.22145 1.17628 0.97285 0.90004 0.88162 1.21025 0.97754 0.94546 1.00236 1.21112 0.99056 0.97575 0.93738 1.21242 0.94966 0.99640 0.99126 1.20966 0.98255 0.94306 0.97762 1.20830 0.99175 1.01418 0.94660 1.78171 1.13839 1.20293 1.01263 0.93518 0.91267 0.93495 0.90117 0.93130 0.97528 0.95320 0.92966 0.92676 0.88493 0.76543 0.84353 0.85066 0.85460 0.84965 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.54 9.26 37.16 0.34 -3.19 16 2 C 0.06 1.28 5.71 -3.82 -0.02 1.26 16 3 N -0.53 -11.88 4.69 -237.51 -1.11 -12.99 16 4 C 0.19 4.95 4.53 -4.97 -0.02 4.93 16 5 C -0.50 -14.22 8.40 -34.44 -0.29 -14.51 16 6 H 0.06 1.78 7.38 -52.49 -0.39 1.39 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.14 2.68 5.38 -4.97 -0.03 2.66 16 14 C 0.26 4.84 6.78 -156.81 -1.06 3.78 16 15 N -0.51 -9.00 11.19 -11.89 -0.13 -9.13 16 16 C 0.25 3.37 11.98 -90.37 -1.08 2.29 16 17 N -0.34 -4.88 3.82 -11.81 -0.05 -4.92 16 18 C 0.16 1.88 6.69 -83.59 -0.56 1.32 16 19 C -0.12 -1.27 9.69 -39.40 -0.38 -1.65 16 20 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 21 C -0.13 -0.90 10.04 -39.55 -0.40 -1.30 16 22 C -0.09 -0.64 10.04 -39.61 -0.40 -1.03 16 23 C -0.14 -1.17 9.48 -39.40 -0.37 -1.54 16 24 N -0.31 -5.35 11.26 32.43 0.37 -4.98 16 25 H 0.05 0.84 6.34 -51.93 -0.33 0.52 16 26 H 0.07 1.48 6.28 -51.93 -0.33 1.15 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.81 6.99 -51.93 -0.36 1.45 16 29 H 0.05 1.02 6.61 -51.93 -0.34 0.68 16 30 H 0.01 0.19 6.01 -51.93 -0.31 -0.12 16 31 H 0.03 0.79 7.91 -51.93 -0.41 0.38 16 32 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 33 H 0.06 1.04 6.07 -51.93 -0.32 0.72 16 34 H 0.10 1.87 7.92 -51.93 -0.41 1.46 16 35 H 0.22 1.72 7.13 -52.49 -0.37 1.34 16 36 H 0.14 1.68 7.75 -52.49 -0.41 1.27 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.78 6.83 -52.49 -0.36 0.42 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -33.12 332.38 -10.13 -43.25 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.16 Total: -0.47 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -4.76 Total: -6.70 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.19 Total: -57.98 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.12 -10.13 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092799108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.304 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds