Wall clock time and date at job start Tue Mar 31 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47409 * 2 1 4 4 C 1.46898 * 111.00262 * 298.12660 * 3 2 1 5 5 C 1.50704 * 109.46922 * 292.92925 * 4 3 2 6 6 H 1.08000 * 119.99588 * 354.95492 * 5 4 3 7 7 C 1.37873 * 120.00256 * 174.96006 * 5 4 3 8 8 N 1.31514 * 120.00087 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00241 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47050 * 89.99731 * 9 7 5 11 11 H 1.48493 * 109.47303 * 210.00022 * 9 7 5 12 12 H 1.48502 * 109.47036 * 329.99971 * 9 7 5 13 13 C 1.46903 * 110.99762 * 62.07580 * 3 2 1 14 14 C 1.50699 * 109.47153 * 66.04274 * 13 3 2 15 15 N 1.33260 * 125.49866 * 90.02517 * 14 13 3 16 16 C 1.30853 * 109.84880 * 179.97438 * 15 14 13 17 17 N 1.34722 * 108.02744 * 359.97438 * 16 15 14 18 18 C 1.40199 * 126.84127 * 180.02562 * 17 16 15 19 19 C 1.38839 * 120.06729 * 184.75556 * 18 17 16 20 20 C 1.38121 * 119.92972 * 179.70160 * 19 18 17 21 21 C 1.38277 * 120.06893 * 0.56994 * 20 19 18 22 22 C 1.38279 * 120.13084 * 359.72217 * 21 20 19 23 23 C 1.38122 * 120.06787 * 359.97438 * 22 21 20 24 24 N 1.30747 * 125.50274 * 269.98598 * 14 13 3 25 25 H 1.09000 * 109.47143 * 299.66350 * 1 2 3 26 26 H 1.09000 * 109.46988 * 59.65871 * 1 2 3 27 27 H 1.09001 * 109.47706 * 179.66219 * 1 2 3 28 28 H 1.09004 * 109.46737 * 240.00272 * 2 1 3 29 29 H 1.08995 * 109.47012 * 120.00450 * 2 1 3 30 30 H 1.09000 * 109.47478 * 52.92679 * 4 3 2 31 31 H 1.08996 * 109.47334 * 172.93184 * 4 3 2 32 32 H 0.96996 * 120.00541 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46895 * 306.04604 * 13 3 2 34 34 H 1.08996 * 109.47268 * 186.04465 * 13 3 2 35 35 H 1.07998 * 125.98558 * 179.97438 * 16 15 14 36 36 H 1.07998 * 120.03148 * 359.96451 * 19 18 17 37 37 H 1.08005 * 119.96083 * 180.31631 * 20 19 18 38 38 H 1.07995 * 119.93284 * 179.75015 * 21 20 19 39 39 H 1.08000 * 119.96302 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.03306 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5858 2.0969 -1.2094 5 6 2.2649 1.4995 -2.4149 6 1 3.0110 0.7290 -2.2877 7 6 1.9340 1.9367 -3.6799 8 7 1.0253 2.8747 -3.8347 9 14 2.7764 1.1968 -5.1740 10 1 2.0020 0.0213 -5.6473 11 1 2.8467 2.2115 -6.2558 12 1 4.1502 0.7691 -4.8065 13 6 1.5897 2.0954 1.2118 14 6 2.2534 1.4803 2.4169 15 7 3.4264 1.8522 2.9283 16 6 3.7103 1.1145 3.9712 17 7 2.7020 0.2391 4.1496 18 6 2.6019 -0.7348 5.1532 19 6 1.5429 -1.6326 5.1481 20 6 1.4504 -2.5948 6.1347 21 6 2.4047 -2.6569 7.1335 22 6 3.4573 -1.7602 7.1446 23 6 3.5586 -0.7998 6.1571 24 7 1.7710 0.4961 3.1298 25 1 -0.3633 0.5086 0.8930 26 1 -0.3633 0.5191 -0.8869 27 1 -0.3634 -1.0276 -0.0061 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.5052 2.0037 -1.3179 31 1 1.8531 3.1503 -1.1266 32 1 0.7927 3.1825 -4.7246 33 1 0.5072 2.0174 1.3138 34 1 1.8729 3.1452 1.1373 35 1 4.5975 1.1937 4.5819 36 1 0.7946 -1.5814 4.3711 37 1 0.6296 -3.2967 6.1284 38 1 2.3281 -3.4076 7.9061 39 1 4.2014 -1.8115 7.9257 40 1 4.3811 -0.1000 6.1661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092799108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:03 Heat of formation + Delta-G solvation = 112.162175 kcal Electronic energy + Delta-G solvation = -21771.545223 eV Core-core repulsion = 18587.887349 eV Total energy + Delta-G solvation = -3183.657874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.39599 -40.13937 -38.96827 -35.32863 -34.66981 -32.76738 -31.87444 -31.45847 -30.71349 -29.21227 -26.81925 -25.06543 -24.85666 -23.74089 -22.30226 -21.95744 -20.60135 -19.29604 -18.36574 -17.30307 -17.20279 -16.86414 -16.61201 -16.35744 -15.84980 -15.73524 -15.12104 -15.09348 -14.67000 -14.40223 -14.04288 -13.93821 -13.49670 -13.31677 -13.17131 -12.97134 -12.76211 -12.64785 -12.54911 -12.46374 -12.01826 -11.94367 -11.76748 -11.59150 -11.31045 -11.12324 -10.88704 -10.58478 -10.01711 -9.35035 -9.02390 -8.17964 -6.26938 -0.28326 0.33802 0.97085 1.18541 1.41221 1.42565 1.54196 1.75405 2.42158 2.78904 3.02419 3.14672 3.28302 3.46348 3.74269 3.94449 3.95742 4.18768 4.24391 4.29051 4.36722 4.42618 4.48769 4.52629 4.60762 4.69547 4.89125 4.93531 5.00586 5.07355 5.15494 5.19486 5.31390 5.39059 5.41268 5.45892 5.52528 5.66935 5.76540 6.05202 6.08958 6.28222 6.55039 6.87116 6.98985 7.41551 8.92701 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030580 B = 0.003250 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.405086 B = 8613.974895 C = 8832.300782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 N -0.537 5.537 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.269 1.269 13 C 0.143 3.857 14 C 0.242 3.758 15 N -0.554 5.554 16 C 0.263 3.737 17 N -0.337 5.337 18 C 0.122 3.878 19 C -0.138 4.138 20 C -0.102 4.102 21 C -0.121 4.121 22 C -0.090 4.090 23 C -0.133 4.133 24 N -0.328 5.328 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.058 0.942 30 H -0.010 1.010 31 H 0.005 0.995 32 H 0.265 0.735 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.270 0.730 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.169 0.831 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -11.027 25.481 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.059 4.059 3 N -0.261 5.261 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.012 3.988 14 C -0.040 4.040 15 N -0.281 5.281 16 C -0.031 4.031 17 N -0.121 5.121 18 C 0.030 3.970 19 C -0.158 4.158 20 C -0.120 4.120 21 C -0.139 4.139 22 C -0.108 4.108 23 C -0.154 4.154 24 N -0.155 5.155 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.008 0.992 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.286 0.714 36 H 0.132 0.868 37 H 0.166 0.834 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.908 -11.000 25.054 27.640 hybrid contribution -0.697 0.073 -1.143 1.341 sum 3.211 -10.927 23.910 26.484 Atomic orbital electron populations 1.22185 0.97708 1.02234 1.00911 1.21863 0.93468 0.90039 1.00566 1.62164 1.59891 1.02744 1.01340 1.19461 0.93599 0.92680 0.86172 1.21360 1.21956 1.21328 0.91157 0.92614 1.25814 0.95867 0.95548 1.02005 1.70066 1.33183 1.30260 1.23671 0.85437 0.78983 0.78118 0.78408 1.19817 1.20567 1.19322 1.20264 0.96276 0.97574 0.84645 1.24124 0.90928 0.92347 0.96586 1.70449 1.16014 1.30136 1.11451 1.27052 0.95266 0.85957 0.94822 1.47903 1.15588 1.26849 1.21736 1.18058 0.99290 0.90555 0.89103 1.21042 0.97749 0.96096 1.00963 1.21361 1.00196 0.97092 0.93388 1.21697 0.93855 0.99687 0.98685 1.21453 0.98653 0.93025 0.97703 1.21216 0.98678 1.01985 0.93500 1.78035 1.15298 1.19978 1.02230 0.92699 0.93862 0.91161 0.92026 0.92330 0.99247 0.97713 0.92661 0.92368 0.89090 0.71432 0.86784 0.83411 0.82327 0.81395 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.07 2.98 5.71 86.30 0.49 3.47 16 3 N -0.54 -25.30 4.69 -905.36 -4.24 -29.54 16 4 C 0.21 11.30 4.53 85.56 0.39 11.69 16 5 C -0.52 -30.34 8.40 25.60 0.21 -30.12 16 6 H 0.06 3.26 7.38 -2.91 -0.02 3.24 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 9 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 C 0.14 5.88 5.38 85.56 0.46 6.34 16 14 C 0.24 9.21 6.78 138.61 0.94 10.15 16 15 N -0.55 -19.44 11.19 -191.54 -2.14 -21.58 16 16 C 0.26 6.64 11.98 180.26 2.16 8.80 16 17 N -0.34 -9.36 3.82 -191.26 -0.73 -10.09 16 18 C 0.12 2.64 6.69 38.09 0.25 2.90 16 19 C -0.14 -2.99 9.69 22.39 0.22 -2.78 16 20 C -0.10 -1.47 10.04 22.25 0.22 -1.24 16 21 C -0.12 -1.17 10.04 22.29 0.22 -0.95 16 22 C -0.09 -0.80 10.04 22.25 0.22 -0.58 16 23 C -0.13 -1.76 9.48 22.38 0.21 -1.55 16 24 N -0.33 -11.55 11.26 -51.31 -0.58 -12.13 16 25 H 0.05 2.04 6.34 -2.39 -0.02 2.03 16 26 H 0.04 1.91 6.28 -2.39 -0.01 1.90 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.06 2.86 6.99 -2.38 -0.02 2.85 16 29 H 0.06 2.44 6.61 -2.39 -0.02 2.42 16 30 H -0.01 -0.58 6.01 -2.39 -0.01 -0.60 16 31 H 0.00 0.28 7.91 -2.39 -0.02 0.26 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 33 H 0.06 2.31 6.07 -2.38 -0.01 2.29 16 34 H 0.09 3.75 7.92 -2.39 -0.02 3.73 16 35 H 0.27 3.28 7.13 -2.91 -0.02 3.26 16 36 H 0.11 2.93 7.75 -2.91 -0.02 2.91 16 37 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 39 H 0.17 0.35 8.06 -2.91 -0.02 0.32 16 40 H 0.16 1.13 6.83 -2.91 -0.02 1.11 16 Total: -1.00 -75.03 332.38 2.80 -72.23 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.05 Total: 9.08 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 7.14 Total: 0.85 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -7.41 Total: -129.57 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.03 2.80 -72.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092799108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.390 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds