Wall clock time and date at job start Tue Mar 31 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47894 * 2 1 4 4 C 1.50700 * 109.46969 * 239.99990 * 2 1 3 5 5 H 1.08007 * 119.99965 * 274.88282 * 4 2 1 6 6 C 1.37879 * 120.00133 * 94.88033 * 4 2 1 7 7 N 1.31516 * 119.99908 * 183.88121 * 6 4 2 8 8 Si 1.86801 * 119.99909 * 3.88022 * 6 4 2 9 9 H 1.48503 * 109.46800 * 84.42576 * 8 6 4 10 10 H 1.48495 * 109.47019 * 204.42240 * 8 6 4 11 11 H 1.48498 * 109.46997 * 324.42875 * 8 6 4 12 12 N 1.46902 * 109.47072 * 120.00301 * 2 1 3 13 13 C 1.46899 * 110.99892 * 176.04277 * 12 2 1 14 14 C 1.46904 * 110.99721 * 299.99508 * 12 2 1 15 15 C 1.50701 * 109.46798 * 170.00050 * 14 12 2 16 16 N 1.33253 * 125.49955 * 270.04024 * 15 14 12 17 17 C 1.30850 * 109.84403 * 179.97438 * 16 15 14 18 18 N 1.34723 * 108.03279 * 0.02562 * 17 16 15 19 19 C 1.40197 * 126.84121 * 180.02562 * 18 17 16 20 20 C 1.38840 * 120.06451 * 184.70171 * 19 18 17 21 21 C 1.38121 * 119.93257 * 179.67669 * 20 19 18 22 22 C 1.38285 * 120.06164 * 0.62127 * 21 20 19 23 23 C 1.38276 * 120.13668 * 359.67433 * 22 21 20 24 24 C 1.38120 * 120.06610 * 0.02562 * 23 22 21 25 25 N 1.30749 * 125.49819 * 90.00037 * 15 14 12 26 26 H 1.09000 * 109.46986 * 66.76103 * 1 2 3 27 27 H 1.08996 * 109.47513 * 186.76656 * 1 2 3 28 28 H 1.08999 * 109.46439 * 306.76999 * 1 2 3 29 29 H 0.97001 * 119.99667 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46873 * 183.95219 * 13 12 2 31 31 H 1.08998 * 109.47400 * 303.95101 * 13 12 2 32 32 H 1.09000 * 109.47347 * 63.95222 * 13 12 2 33 33 H 1.08998 * 109.46960 * 50.00033 * 14 12 2 34 34 H 1.09000 * 109.46868 * 289.99832 * 14 12 2 35 35 H 1.08002 * 125.98551 * 180.26331 * 17 16 15 36 36 H 1.08001 * 120.02969 * 359.97438 * 20 19 18 37 37 H 1.07993 * 119.96532 * 180.33859 * 21 20 19 38 38 H 1.07999 * 119.92571 * 179.69800 * 22 21 20 39 39 H 1.07994 * 119.96946 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.03625 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1372 -1.7854 -1.2284 6 6 2.3579 0.0118 -2.3589 7 7 2.7231 -0.6131 -3.4570 8 14 2.2801 1.8780 -2.3281 9 1 3.5486 2.4172 -1.7755 10 1 2.0854 2.3881 -3.7091 11 1 1.1446 2.3120 -1.4753 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7947 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6159 16 7 1.0543 -1.8246 4.1243 17 6 1.6264 -2.3887 5.1571 18 7 2.8320 -1.8135 5.3319 19 6 3.7735 -2.1195 6.3246 20 6 4.9365 -1.3693 6.4352 21 6 5.8591 -1.6690 7.4185 22 6 5.6313 -2.7232 8.2840 23 6 4.4768 -3.4761 8.1723 24 6 3.5477 -3.1773 7.1950 25 7 2.9585 -0.8472 4.3204 26 1 -0.3633 0.4055 -0.9443 27 1 -0.3634 -1.0204 0.1211 28 1 -0.3632 0.6152 0.8232 29 1 2.9525 -0.1049 -4.2507 30 1 3.8163 -1.3723 2.0499 31 1 3.8069 -1.2917 0.2718 32 1 3.9193 0.2042 1.2299 33 1 0.4723 0.1325 2.3564 34 1 2.0520 0.9345 2.5280 35 1 1.2073 -3.1799 5.7611 36 1 5.1173 -0.5491 5.7562 37 1 6.7613 -1.0823 7.5085 38 1 6.3564 -2.9587 9.0489 39 1 4.3015 -4.2985 8.8499 40 1 2.6460 -3.7654 7.1085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092801017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:59 Heat of formation + Delta-G solvation = 135.420935 kcal Electronic energy + Delta-G solvation = -21801.914805 eV Core-core repulsion = 18619.265507 eV Total energy + Delta-G solvation = -3182.649298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.28368 -39.43548 -37.19186 -34.33540 -32.65409 -31.74657 -31.07088 -30.25423 -29.48528 -27.46105 -24.85381 -24.03320 -23.76614 -22.66805 -21.43560 -20.15387 -19.20261 -18.48189 -17.00319 -16.52457 -15.96657 -15.62637 -15.21335 -14.95685 -14.48706 -14.20768 -13.95948 -13.80947 -13.51325 -13.13023 -12.66192 -12.46123 -12.29518 -12.12787 -11.97480 -11.41812 -11.33869 -11.07499 -10.96014 -10.83455 -10.66990 -10.33794 -10.17631 -9.94407 -9.79578 -9.64763 -9.40530 -9.08021 -8.57569 -8.53151 -7.35299 -6.07853 -4.06354 0.52343 0.94663 1.90700 2.14697 2.95590 3.27170 3.35952 3.37515 3.43700 4.12568 4.21670 4.40329 4.48246 4.62138 4.70109 4.85595 4.97045 4.98021 5.21530 5.28320 5.31010 5.58301 5.77045 5.87963 5.95063 5.98661 6.10178 6.19457 6.29532 6.33469 6.39692 6.45035 6.54917 6.62157 6.70922 6.88936 6.92288 7.05652 7.32534 7.62296 7.96985 8.05247 8.15268 8.65367 9.03065 9.55180 11.05068 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.003422 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.454831 B = 8180.285278 C = 8573.280607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.182 3.818 3 H 0.003 0.997 4 C -0.500 4.500 5 H 0.082 0.918 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.523 5.523 13 C 0.039 3.961 14 C 0.134 3.866 15 C 0.261 3.739 16 N -0.515 5.515 17 C 0.254 3.746 18 N -0.341 5.341 19 C 0.161 3.839 20 C -0.115 4.115 21 C -0.096 4.096 22 C -0.130 4.130 23 C -0.094 4.094 24 C -0.139 4.139 25 N -0.311 5.311 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.022 0.978 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.012 0.988 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.219 0.781 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -3.028 24.651 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.076 3.924 3 H 0.020 0.980 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.699 3.301 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.249 5.249 13 C -0.109 4.109 14 C 0.003 3.997 15 C -0.022 4.022 16 N -0.239 5.239 17 C -0.042 4.042 18 N -0.126 5.126 19 C 0.068 3.932 20 C -0.135 4.135 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.113 4.113 24 C -0.160 4.160 25 N -0.137 5.137 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.030 0.970 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.235 0.765 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.150 -3.045 24.117 24.512 hybrid contribution 0.389 1.515 0.138 1.570 sum 3.539 -1.530 24.255 24.559 Atomic orbital electron populations 1.22006 0.97598 1.00765 0.98944 1.19763 0.92435 0.92104 0.88145 0.97976 1.20858 1.43105 0.95965 0.93887 0.90043 1.24986 0.94633 0.97965 0.95415 1.69889 1.45930 1.35683 1.01961 0.86950 0.79091 0.86851 0.77234 1.20326 1.21395 1.18949 1.62128 1.10504 1.51932 1.00303 1.22211 0.87450 0.99033 1.02208 1.20513 1.02306 0.91610 0.85231 1.24509 0.86968 0.94393 0.96284 1.70520 1.32547 1.11294 1.09583 1.26166 0.83619 0.98573 0.95845 1.47796 1.13837 1.28311 1.22621 1.17629 0.89906 0.96654 0.88993 1.21021 0.92573 1.00415 0.99538 1.21114 0.98882 0.97249 0.94240 1.21251 0.97809 0.95995 0.99849 1.20969 0.93473 0.99507 0.97323 1.20834 1.01539 0.97082 0.96544 1.78167 1.22884 1.10915 1.01732 0.93018 0.92415 0.95895 0.92587 0.93795 0.89452 0.96982 0.87922 0.93376 0.76478 0.84384 0.85046 0.85426 0.84924 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.76 37.16 0.33 -2.61 16 2 C 0.18 4.36 1.70 -68.86 -0.12 4.24 16 3 H 0.00 0.06 5.36 -51.93 -0.28 -0.21 16 4 C -0.50 -13.98 7.39 -34.44 -0.25 -14.23 16 5 H 0.08 2.53 8.05 -52.48 -0.42 2.11 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 8 Si 0.87 21.46 26.95 -169.99 -4.58 16.88 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.24 6.88 56.52 0.39 -5.85 16 12 N -0.52 -11.57 4.61 -237.73 -1.10 -12.66 16 13 C 0.04 0.85 9.10 60.06 0.55 1.40 16 14 C 0.13 2.55 5.40 -4.97 -0.03 2.52 16 15 C 0.26 4.74 6.77 -156.81 -1.06 3.68 16 16 N -0.51 -8.76 11.19 -11.89 -0.13 -8.90 16 17 C 0.25 3.32 11.98 -90.37 -1.08 2.24 16 18 N -0.34 -4.84 3.82 -11.80 -0.05 -4.88 16 19 C 0.16 1.86 6.69 -83.59 -0.56 1.30 16 20 C -0.12 -1.27 9.68 -39.40 -0.38 -1.65 16 21 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 22 C -0.13 -0.89 10.04 -39.55 -0.40 -1.29 16 23 C -0.09 -0.64 10.04 -39.61 -0.40 -1.03 16 24 C -0.14 -1.16 9.48 -39.40 -0.37 -1.53 16 25 N -0.31 -5.39 11.32 32.43 0.37 -5.02 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.02 0.42 6.57 -51.93 -0.34 0.08 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.04 0.90 6.72 -51.93 -0.35 0.56 16 31 H 0.09 2.08 6.82 -51.93 -0.35 1.73 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 1.86 5.97 -51.93 -0.31 1.55 16 34 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.22 1.66 7.13 -52.49 -0.37 1.29 16 36 H 0.14 1.67 7.75 -52.49 -0.41 1.26 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.78 6.83 -52.49 -0.36 0.42 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -33.33 331.69 -9.29 -42.62 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.30 Total: -0.42 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.28 Total: -6.19 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.13 Total: -57.90 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.58 Total: 16.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.33 -9.29 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092801017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.040 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds