Wall clock time and date at job start Tue Mar 31 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47894 * 2 1 4 4 C 1.50700 * 109.46969 * 239.99990 * 2 1 3 5 5 H 1.08007 * 119.99965 * 274.88282 * 4 2 1 6 6 C 1.37879 * 120.00133 * 94.88033 * 4 2 1 7 7 N 1.31516 * 119.99908 * 183.88121 * 6 4 2 8 8 Si 1.86801 * 119.99909 * 3.88022 * 6 4 2 9 9 H 1.48503 * 109.46800 * 84.42576 * 8 6 4 10 10 H 1.48495 * 109.47019 * 204.42240 * 8 6 4 11 11 H 1.48498 * 109.46997 * 324.42875 * 8 6 4 12 12 N 1.46902 * 109.47072 * 120.00301 * 2 1 3 13 13 C 1.46899 * 110.99892 * 176.04277 * 12 2 1 14 14 C 1.46904 * 110.99721 * 299.99508 * 12 2 1 15 15 C 1.50701 * 109.46798 * 170.00050 * 14 12 2 16 16 N 1.33253 * 125.49955 * 270.04024 * 15 14 12 17 17 C 1.30850 * 109.84403 * 179.97438 * 16 15 14 18 18 N 1.34723 * 108.03279 * 0.02562 * 17 16 15 19 19 C 1.40197 * 126.84121 * 180.02562 * 18 17 16 20 20 C 1.38840 * 120.06451 * 184.70171 * 19 18 17 21 21 C 1.38121 * 119.93257 * 179.67669 * 20 19 18 22 22 C 1.38285 * 120.06164 * 0.62127 * 21 20 19 23 23 C 1.38276 * 120.13668 * 359.67433 * 22 21 20 24 24 C 1.38120 * 120.06610 * 0.02562 * 23 22 21 25 25 N 1.30749 * 125.49819 * 90.00037 * 15 14 12 26 26 H 1.09000 * 109.46986 * 66.76103 * 1 2 3 27 27 H 1.08996 * 109.47513 * 186.76656 * 1 2 3 28 28 H 1.08999 * 109.46439 * 306.76999 * 1 2 3 29 29 H 0.97001 * 119.99667 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46873 * 183.95219 * 13 12 2 31 31 H 1.08998 * 109.47400 * 303.95101 * 13 12 2 32 32 H 1.09000 * 109.47347 * 63.95222 * 13 12 2 33 33 H 1.08998 * 109.46960 * 50.00033 * 14 12 2 34 34 H 1.09000 * 109.46868 * 289.99832 * 14 12 2 35 35 H 1.08002 * 125.98551 * 180.26331 * 17 16 15 36 36 H 1.08001 * 120.02969 * 359.97438 * 20 19 18 37 37 H 1.07993 * 119.96532 * 180.33859 * 21 20 19 38 38 H 1.07999 * 119.92571 * 179.69800 * 22 21 20 39 39 H 1.07994 * 119.96946 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.03625 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1372 -1.7854 -1.2284 6 6 2.3579 0.0118 -2.3589 7 7 2.7231 -0.6131 -3.4570 8 14 2.2801 1.8780 -2.3281 9 1 3.5486 2.4172 -1.7755 10 1 2.0854 2.3881 -3.7091 11 1 1.1446 2.3120 -1.4753 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7947 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6159 16 7 1.0543 -1.8246 4.1243 17 6 1.6264 -2.3887 5.1571 18 7 2.8320 -1.8135 5.3319 19 6 3.7735 -2.1195 6.3246 20 6 4.9365 -1.3693 6.4352 21 6 5.8591 -1.6690 7.4185 22 6 5.6313 -2.7232 8.2840 23 6 4.4768 -3.4761 8.1723 24 6 3.5477 -3.1773 7.1950 25 7 2.9585 -0.8472 4.3204 26 1 -0.3633 0.4055 -0.9443 27 1 -0.3634 -1.0204 0.1211 28 1 -0.3632 0.6152 0.8232 29 1 2.9525 -0.1049 -4.2507 30 1 3.8163 -1.3723 2.0499 31 1 3.8069 -1.2917 0.2718 32 1 3.9193 0.2042 1.2299 33 1 0.4723 0.1325 2.3564 34 1 2.0520 0.9345 2.5280 35 1 1.2073 -3.1799 5.7611 36 1 5.1173 -0.5491 5.7562 37 1 6.7613 -1.0823 7.5085 38 1 6.3564 -2.9587 9.0489 39 1 4.3015 -4.2985 8.8499 40 1 2.6460 -3.7654 7.1085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092801017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:58 Heat of formation + Delta-G solvation = 114.415530 kcal Electronic energy + Delta-G solvation = -21802.825668 eV Core-core repulsion = 18619.265507 eV Total energy + Delta-G solvation = -3183.560161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.39571 -40.14317 -38.91372 -35.42187 -34.58817 -32.89066 -32.08856 -31.63431 -30.69240 -28.93394 -26.79908 -25.41599 -24.84017 -23.60046 -22.31231 -21.61538 -20.81752 -19.36839 -19.07520 -17.31950 -17.15639 -16.79740 -16.66148 -15.99312 -15.79138 -15.61324 -15.21227 -15.10698 -14.57362 -14.43845 -14.32035 -13.95939 -13.70558 -13.30547 -13.17387 -12.90651 -12.75275 -12.63484 -12.52939 -12.18970 -12.11430 -12.01568 -11.80965 -11.68756 -11.17418 -11.08883 -10.88478 -10.75645 -10.03064 -9.36409 -9.10197 -8.28819 -6.32240 -0.29198 0.32445 0.95258 1.18776 1.32944 1.34417 1.45206 1.74359 2.32947 2.77674 2.95308 3.10103 3.27904 3.41216 3.73978 3.93155 3.94780 4.23086 4.29010 4.35802 4.41347 4.42751 4.48672 4.54306 4.62532 4.75919 4.84336 4.88351 4.99173 5.05813 5.11337 5.14822 5.21450 5.37954 5.40993 5.45727 5.51186 5.68351 5.75392 6.03013 6.08016 6.24286 6.60855 6.75151 6.97728 7.33098 8.88106 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.003422 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.454831 B = 8180.285278 C = 8573.280607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.184 3.816 3 H 0.004 0.996 4 C -0.499 4.499 5 H 0.032 0.968 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.935 3.065 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.241 1.241 12 N -0.536 5.536 13 C 0.054 3.946 14 C 0.139 3.861 15 C 0.240 3.760 16 N -0.550 5.550 17 C 0.263 3.737 18 N -0.337 5.337 19 C 0.121 3.879 20 C -0.139 4.139 21 C -0.102 4.102 22 C -0.121 4.121 23 C -0.090 4.090 24 C -0.133 4.133 25 N -0.336 5.336 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.266 0.734 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.270 0.730 36 H 0.113 0.887 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.169 0.831 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -3.006 28.276 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.022 0.978 4 C -0.538 4.538 5 H 0.051 0.949 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.759 3.241 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.165 1.165 12 N -0.261 5.261 13 C -0.095 4.095 14 C 0.009 3.991 15 C -0.042 4.042 16 N -0.276 5.276 17 C -0.031 4.031 18 N -0.121 5.121 19 C 0.030 3.970 20 C -0.159 4.159 21 C -0.121 4.121 22 C -0.139 4.139 23 C -0.108 4.108 24 C -0.154 4.154 25 N -0.163 5.163 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.286 0.714 36 H 0.132 0.868 37 H 0.166 0.834 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.899 -3.035 27.795 28.110 hybrid contribution 0.598 1.319 -0.763 1.637 sum 3.497 -1.717 27.032 27.311 Atomic orbital electron populations 1.21893 0.95583 1.01108 1.00149 1.19656 0.93888 0.91506 0.87238 0.97798 1.20967 1.42870 0.93968 0.95990 0.94923 1.25807 0.94300 1.03229 0.94786 1.70040 1.47774 1.37855 1.02911 0.85920 0.80022 0.80388 0.77789 1.19757 1.20993 1.16457 1.61973 1.10341 1.52646 1.01170 1.21994 0.87772 0.98920 1.00778 1.20437 1.02672 0.91876 0.84114 1.24243 0.87849 0.95413 0.96678 1.70445 1.33611 1.12074 1.11454 1.27068 0.82785 0.98354 0.94901 1.47880 1.14666 1.27339 1.22216 1.18057 0.90142 0.98859 0.89976 1.21039 0.93803 1.00537 1.00554 1.21363 0.98870 0.98093 0.93745 1.21701 0.98320 0.94557 0.99356 1.21457 0.92591 0.99910 0.96865 1.21222 1.02823 0.95775 0.95553 1.78040 1.22955 1.12535 1.02819 0.93432 0.93164 0.92402 0.92447 0.93080 0.92596 0.96562 0.87029 0.92736 0.71443 0.86844 0.83426 0.82312 0.81365 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.76 71.98 0.63 -4.85 16 2 C 0.18 8.83 1.70 44.17 0.08 8.91 16 3 H 0.00 0.21 5.36 -2.39 -0.01 0.20 16 4 C -0.50 -28.96 7.39 25.60 0.19 -28.78 16 5 H 0.03 2.16 8.05 -2.91 -0.02 2.14 16 6 C 0.02 0.96 5.47 84.65 0.46 1.43 16 7 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 8 Si 0.93 44.28 26.95 68.60 1.85 46.13 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.24 -10.45 6.88 99.48 0.68 -9.77 16 12 N -0.54 -24.01 4.61 -906.04 -4.18 -28.19 16 13 C 0.05 2.42 9.10 127.69 1.16 3.58 16 14 C 0.14 5.23 5.40 85.56 0.46 5.69 16 15 C 0.24 8.74 6.77 138.62 0.94 9.68 16 16 N -0.55 -18.30 11.19 -191.54 -2.14 -20.44 16 17 C 0.26 6.42 11.98 180.26 2.16 8.58 16 18 N -0.34 -9.29 3.82 -191.26 -0.73 -10.02 16 19 C 0.12 2.65 6.69 38.09 0.25 2.91 16 20 C -0.14 -3.04 9.68 22.39 0.22 -2.83 16 21 C -0.10 -1.50 10.04 22.25 0.22 -1.28 16 22 C -0.12 -1.20 10.04 22.29 0.22 -0.98 16 23 C -0.09 -0.82 10.04 22.25 0.22 -0.60 16 24 C -0.13 -1.78 9.48 22.38 0.21 -1.57 16 25 N -0.34 -11.75 11.32 -51.31 -0.58 -12.33 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.03 6.57 -2.39 -0.02 2.02 16 29 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.05 2.19 6.72 -2.39 -0.02 2.17 16 31 H 0.06 2.82 6.82 -2.39 -0.02 2.80 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 3.91 5.97 -2.39 -0.01 3.89 16 34 H 0.05 1.96 8.12 -2.39 -0.02 1.94 16 35 H 0.27 3.09 7.13 -2.91 -0.02 3.07 16 36 H 0.11 2.94 7.75 -2.91 -0.02 2.92 16 37 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 39 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.16 1.15 6.83 -2.91 -0.02 1.13 16 Total: -1.00 -76.78 331.69 2.97 -73.81 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.02 Total: 10.30 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 7.43 Total: -0.09 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -7.34 Total: -130.16 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.85 Total: 46.13 kcal Total: -76.78 2.97 -73.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092801017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.229 kcal (2) G-P(sol) polarization free energy of solvation -76.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds