Wall clock time and date at job start Tue Mar 31 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30836 * 125.90246 * 2 1 4 4 N 1.40078 * 108.21031 * 180.26143 * 3 2 1 5 5 H 0.97002 * 126.03989 * 179.70003 * 4 3 2 6 6 C 1.34950 * 107.92472 * 359.71714 * 4 3 2 7 7 C 1.35322 * 107.74445 * 0.02562 * 6 4 3 8 8 C 1.50702 * 126.03822 * 179.97438 * 7 6 4 9 9 N 1.46899 * 109.47137 * 260.02343 * 8 7 6 10 10 C 1.46900 * 110.99865 * 71.62701 * 9 8 7 11 11 C 1.50703 * 109.47007 * 61.89036 * 10 9 8 12 12 H 1.08004 * 119.99941 * 2.59471 * 11 10 9 13 13 C 1.37880 * 119.99758 * 182.59465 * 11 10 9 14 14 N 1.31513 * 119.99447 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00191 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47409 * 89.99965 * 15 13 11 17 17 H 1.48505 * 109.46951 * 209.99945 * 15 13 11 18 18 H 1.48500 * 109.47030 * 329.99803 * 15 13 11 19 19 C 1.46898 * 110.99721 * 195.58280 * 9 8 7 20 20 C 1.50709 * 109.46729 * 170.00020 * 19 9 8 21 21 C 1.38235 * 119.61437 * 94.97846 * 20 19 9 22 22 C 1.38628 * 119.15664 * 179.79032 * 21 20 19 23 23 C 1.38675 * 118.41748 * 0.47155 * 22 21 20 24 24 C 1.38171 * 119.16710 * 359.50526 * 23 22 21 25 25 N 1.31852 * 119.62021 * 274.99838 * 20 19 9 26 26 H 1.08997 * 109.46761 * 270.20886 * 1 2 3 27 27 H 1.08997 * 109.46890 * 30.20920 * 1 2 3 28 28 H 1.09002 * 109.47250 * 150.20871 * 1 2 3 29 29 H 1.08001 * 126.12605 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.46591 * 140.02369 * 8 7 6 31 31 H 1.08994 * 109.47052 * 20.02846 * 8 7 6 32 32 H 1.08998 * 109.46926 * 181.88934 * 10 9 8 33 33 H 1.08997 * 109.47412 * 301.88895 * 10 9 8 34 34 H 0.97003 * 119.99935 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47425 * 50.00304 * 19 9 8 36 36 H 1.08995 * 109.46846 * 289.99849 * 19 9 8 37 37 H 1.07997 * 120.41889 * 359.97438 * 21 20 19 38 38 H 1.07996 * 120.79169 * 180.23136 * 22 21 20 39 39 H 1.08006 * 120.41536 * 179.78396 * 23 22 21 40 40 H 1.08000 * 119.61975 * 180.24952 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0061 5 1 4.3908 1.2079 -0.0115 6 6 3.6142 -0.7154 -0.0034 7 6 2.3271 -1.1330 0.0036 8 6 1.8599 -2.5658 0.0082 9 7 1.4733 -2.9592 -1.3534 10 6 2.6543 -3.1029 -2.2151 11 6 3.5425 -4.1927 -1.6724 12 1 3.2381 -4.7536 -0.8011 13 6 4.7437 -4.4736 -2.2882 14 7 5.5191 -5.4242 -1.8142 15 14 5.2705 -3.5029 -3.7947 16 1 6.0509 -2.3134 -3.3692 17 1 6.1121 -4.3610 -4.6670 18 1 4.0673 -3.0629 -4.5456 19 6 0.6787 -4.1946 -1.3388 20 6 0.0963 -4.4334 -2.7081 21 6 0.7591 -5.2579 -3.5980 22 6 0.2127 -5.4745 -4.8535 23 6 -0.9801 -4.8430 -5.1719 24 6 -1.5855 -4.0330 -4.2304 25 7 -1.0392 -3.8533 -3.0436 26 1 -0.3633 0.0037 1.0276 27 1 -0.3633 0.8881 -0.5171 28 1 -0.3634 -0.8919 -0.5106 29 1 4.4892 -1.3486 -0.0070 30 1 1.0018 -2.6659 0.6728 31 1 2.6669 -3.2100 0.3572 32 1 2.3375 -3.3618 -3.2254 33 1 3.2049 -2.1625 -2.2368 34 1 6.3640 -5.6222 -2.2476 35 1 -0.1284 -4.0989 -0.6124 36 1 1.3173 -5.0340 -1.0640 37 1 1.6893 -5.7296 -3.3175 38 1 0.7063 -6.1165 -5.5679 39 1 -1.4326 -4.9863 -6.1422 40 1 -2.5168 -3.5409 -4.4693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:08 Heat of formation + Delta-G solvation = 115.846102 kcal Electronic energy + Delta-G solvation = -22754.465619 eV Core-core repulsion = 19570.967493 eV Total energy + Delta-G solvation = -3183.498126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74532 -39.73764 -36.75992 -32.69311 -32.47916 -31.99529 -31.49807 -29.82589 -27.87078 -27.46447 -25.85366 -23.84896 -23.01300 -21.97230 -20.49554 -19.85249 -18.84644 -17.30621 -16.88960 -16.26187 -15.77463 -15.12603 -15.01274 -14.35057 -14.23565 -14.04703 -13.60986 -13.16227 -12.99618 -12.78711 -12.60563 -12.39243 -12.31243 -12.18062 -11.67819 -11.62510 -11.15483 -11.09030 -10.81746 -10.79166 -10.35682 -10.14003 -9.89473 -9.60557 -9.41052 -8.95766 -8.88355 -8.66689 -8.53775 -7.96579 -7.13313 -6.18666 -4.17132 1.54951 1.73731 2.37105 3.18548 3.22469 3.29028 3.33169 3.35444 4.22810 4.32398 4.78042 5.08793 5.15655 5.18393 5.22117 5.35930 5.45054 5.49406 5.65327 5.77426 5.87923 5.95461 5.99810 6.08774 6.15564 6.30671 6.37458 6.41056 6.45500 6.54568 6.62406 6.69450 6.79400 6.95054 7.12496 7.18309 7.21105 7.51908 7.72428 8.04639 8.10100 8.16670 8.37634 8.50489 8.84598 9.45828 10.93529 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.007830 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.213391 B = 3575.134618 C = 5331.900343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.093 3.907 3 N -0.316 5.316 4 N -0.488 5.488 5 H 0.433 0.567 6 C 0.069 3.931 7 C -0.207 4.207 8 C 0.133 3.867 9 N -0.519 5.519 10 C 0.153 3.847 11 C -0.544 4.544 12 H 0.078 0.922 13 C 0.077 3.923 14 N -0.897 5.897 15 Si 0.868 3.132 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.265 1.265 19 C 0.106 3.894 20 C 0.155 3.845 21 C -0.148 4.148 22 C -0.085 4.085 23 C -0.187 4.187 24 C 0.087 3.913 25 N -0.472 5.472 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.177 0.823 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.146 0.854 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 3.962 -0.580 9.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 N -0.141 5.141 4 N -0.196 5.196 5 H 0.276 0.724 6 C -0.078 4.078 7 C -0.218 4.218 8 C 0.005 3.995 9 N -0.243 5.243 10 C 0.026 3.974 11 C -0.583 4.583 12 H 0.096 0.904 13 C -0.126 4.126 14 N -0.535 5.535 15 Si 0.696 3.304 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.023 4.023 20 C 0.017 3.983 21 C -0.169 4.169 22 C -0.111 4.111 23 C -0.208 4.208 24 C -0.071 4.071 25 N -0.182 5.182 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.194 0.806 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.163 0.837 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.264 6.029 -0.186 11.055 hybrid contribution 2.137 -1.335 -1.463 2.914 sum -7.127 4.693 -1.649 8.691 Atomic orbital electron populations 1.20152 0.87026 1.03681 1.02057 1.22202 0.96787 0.90289 0.98131 1.77134 0.86868 1.22926 1.27130 1.46093 1.06973 1.05570 1.60930 0.72394 1.22571 1.00073 0.84699 1.00482 1.19884 0.91254 0.96236 1.14431 1.20193 0.99099 0.90121 0.90107 1.62378 1.22251 1.29526 1.10111 1.20184 0.87813 0.96248 0.93174 1.21653 1.03456 1.18384 1.14816 0.90439 1.24874 0.96354 0.94670 0.96665 1.69919 1.12004 1.30857 1.40706 0.86960 0.79149 0.80280 0.84059 1.20407 1.21376 1.18927 1.20853 0.96305 0.94118 0.91008 1.21218 0.89761 0.90836 0.96512 1.22305 1.01125 0.99411 0.94013 1.21557 0.95023 0.97958 0.96608 1.22003 0.97475 1.00448 1.00825 1.22609 0.99111 0.95958 0.89376 1.67486 1.11297 1.20618 1.18778 0.91380 0.91799 0.89192 0.80638 0.91938 0.92208 0.95651 0.95725 0.92722 0.90845 0.91659 0.83667 0.85506 0.85749 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.26 36.00 0.37 -0.64 16 2 C 0.09 1.61 7.22 -82.41 -0.59 1.02 16 3 N -0.32 -5.57 12.70 33.67 0.43 -5.14 16 4 N -0.49 -7.65 7.36 30.45 0.22 -7.43 16 5 H 0.43 5.22 8.96 -182.61 -1.64 3.58 16 6 C 0.07 1.18 11.26 -17.22 -0.19 0.99 16 7 C -0.21 -3.72 4.92 -105.05 -0.52 -4.24 16 8 C 0.13 2.44 4.93 -4.98 -0.02 2.41 16 9 N -0.52 -10.27 4.65 -238.97 -1.11 -11.38 16 10 C 0.15 3.47 3.72 -4.97 -0.02 3.45 16 11 C -0.54 -13.57 7.89 -34.44 -0.27 -13.84 16 12 H 0.08 2.08 6.19 -52.48 -0.33 1.76 16 13 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -25.33 13.96 55.43 0.77 -24.55 16 15 Si 0.87 20.60 27.42 -169.99 -4.66 15.94 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.26 -6.28 6.62 56.52 0.37 -5.91 16 19 C 0.11 1.95 5.09 -4.97 -0.03 1.93 16 20 C 0.15 2.86 5.64 -82.58 -0.47 2.39 16 21 C -0.15 -2.66 8.31 -39.44 -0.33 -2.99 16 22 C -0.09 -1.30 10.18 -39.28 -0.40 -1.70 16 23 C -0.19 -2.57 10.11 -39.44 -0.40 -2.97 16 24 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 25 N -0.47 -8.32 10.27 -9.47 -0.10 -8.42 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.35 7.96 -51.93 -0.41 0.94 16 29 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 30 H 0.06 1.02 7.82 -51.93 -0.41 0.61 16 31 H 0.06 1.20 6.36 -51.93 -0.33 0.87 16 32 H 0.03 0.62 5.52 -51.93 -0.29 0.33 16 33 H 0.02 0.59 6.21 -51.93 -0.32 0.27 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 36 H 0.07 1.29 6.28 -51.93 -0.33 0.96 16 37 H 0.15 2.81 8.06 -52.49 -0.42 2.39 16 38 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -30.51 331.40 -9.19 -39.70 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.58 Total: 7.47 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.16 Total: -11.18 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.22 Total: -56.92 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.66 Total: 15.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.51 -9.19 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.542 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds