Wall clock time and date at job start Tue Mar 31 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30836 * 125.90246 * 2 1 4 4 N 1.40078 * 108.21031 * 180.26143 * 3 2 1 5 5 H 0.97002 * 126.03989 * 179.70003 * 4 3 2 6 6 C 1.34950 * 107.92472 * 359.71714 * 4 3 2 7 7 C 1.35322 * 107.74445 * 0.02562 * 6 4 3 8 8 C 1.50702 * 126.03822 * 179.97438 * 7 6 4 9 9 N 1.46899 * 109.47137 * 260.02343 * 8 7 6 10 10 C 1.46900 * 110.99865 * 71.62701 * 9 8 7 11 11 C 1.50703 * 109.47007 * 61.89036 * 10 9 8 12 12 H 1.08004 * 119.99941 * 2.59471 * 11 10 9 13 13 C 1.37880 * 119.99758 * 182.59465 * 11 10 9 14 14 N 1.31513 * 119.99447 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00191 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47409 * 89.99965 * 15 13 11 17 17 H 1.48505 * 109.46951 * 209.99945 * 15 13 11 18 18 H 1.48500 * 109.47030 * 329.99803 * 15 13 11 19 19 C 1.46898 * 110.99721 * 195.58280 * 9 8 7 20 20 C 1.50709 * 109.46729 * 170.00020 * 19 9 8 21 21 C 1.38235 * 119.61437 * 94.97846 * 20 19 9 22 22 C 1.38628 * 119.15664 * 179.79032 * 21 20 19 23 23 C 1.38675 * 118.41748 * 0.47155 * 22 21 20 24 24 C 1.38171 * 119.16710 * 359.50526 * 23 22 21 25 25 N 1.31852 * 119.62021 * 274.99838 * 20 19 9 26 26 H 1.08997 * 109.46761 * 270.20886 * 1 2 3 27 27 H 1.08997 * 109.46890 * 30.20920 * 1 2 3 28 28 H 1.09002 * 109.47250 * 150.20871 * 1 2 3 29 29 H 1.08001 * 126.12605 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.46591 * 140.02369 * 8 7 6 31 31 H 1.08994 * 109.47052 * 20.02846 * 8 7 6 32 32 H 1.08998 * 109.46926 * 181.88934 * 10 9 8 33 33 H 1.08997 * 109.47412 * 301.88895 * 10 9 8 34 34 H 0.97003 * 119.99935 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47425 * 50.00304 * 19 9 8 36 36 H 1.08995 * 109.46846 * 289.99849 * 19 9 8 37 37 H 1.07997 * 120.41889 * 359.97438 * 21 20 19 38 38 H 1.07996 * 120.79169 * 180.23136 * 22 21 20 39 39 H 1.08006 * 120.41536 * 179.78396 * 23 22 21 40 40 H 1.08000 * 119.61975 * 180.24952 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0061 5 1 4.3908 1.2079 -0.0115 6 6 3.6142 -0.7154 -0.0034 7 6 2.3271 -1.1330 0.0036 8 6 1.8599 -2.5658 0.0082 9 7 1.4733 -2.9592 -1.3534 10 6 2.6543 -3.1029 -2.2151 11 6 3.5425 -4.1927 -1.6724 12 1 3.2381 -4.7536 -0.8011 13 6 4.7437 -4.4736 -2.2882 14 7 5.5191 -5.4242 -1.8142 15 14 5.2705 -3.5029 -3.7947 16 1 6.0509 -2.3134 -3.3692 17 1 6.1121 -4.3610 -4.6670 18 1 4.0673 -3.0629 -4.5456 19 6 0.6787 -4.1946 -1.3388 20 6 0.0963 -4.4334 -2.7081 21 6 0.7591 -5.2579 -3.5980 22 6 0.2127 -5.4745 -4.8535 23 6 -0.9801 -4.8430 -5.1719 24 6 -1.5855 -4.0330 -4.2304 25 7 -1.0392 -3.8533 -3.0436 26 1 -0.3633 0.0037 1.0276 27 1 -0.3633 0.8881 -0.5171 28 1 -0.3634 -0.8919 -0.5106 29 1 4.4892 -1.3486 -0.0070 30 1 1.0018 -2.6659 0.6728 31 1 2.6669 -3.2100 0.3572 32 1 2.3375 -3.3618 -3.2254 33 1 3.2049 -2.1625 -2.2368 34 1 6.3640 -5.6222 -2.2476 35 1 -0.1284 -4.0989 -0.6124 36 1 1.3173 -5.0340 -1.0640 37 1 1.6893 -5.7296 -3.3175 38 1 0.7063 -6.1165 -5.5679 39 1 -1.4326 -4.9863 -6.1422 40 1 -2.5168 -3.5409 -4.4693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:08 Heat of formation + Delta-G solvation = 95.099324 kcal Electronic energy + Delta-G solvation = -22755.365267 eV Core-core repulsion = 19570.967493 eV Total energy + Delta-G solvation = -3184.397774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.08485 -41.00571 -38.34281 -34.57638 -33.84387 -33.29246 -32.80706 -31.26743 -29.66509 -28.68025 -27.24035 -25.59261 -24.24198 -23.41231 -21.86094 -21.41648 -20.21873 -19.10183 -18.40654 -17.48893 -17.08822 -16.63679 -16.43613 -16.05226 -15.85107 -15.42330 -15.00008 -14.58909 -14.42092 -14.30748 -13.97224 -13.76606 -13.61655 -13.48135 -13.26254 -12.88271 -12.87334 -12.76085 -12.40187 -12.26598 -12.07696 -11.84491 -11.63542 -11.38781 -10.76210 -10.63912 -10.21471 -10.18063 -9.81397 -9.34328 -8.80156 -8.26497 -6.26733 0.31464 0.50862 1.02343 1.28223 1.34185 1.43760 1.86114 2.11177 2.33178 2.96174 3.09355 3.53868 3.64335 3.92595 4.04985 4.12146 4.12924 4.34809 4.39022 4.41296 4.57384 4.65011 4.76310 4.84260 4.92392 4.95891 5.00764 5.04033 5.11660 5.15420 5.22370 5.27560 5.32040 5.38681 5.45207 5.57073 5.87348 5.95165 6.19752 6.42021 6.50300 6.51901 6.79314 6.84839 7.24506 7.38952 8.88666 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.007830 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.213391 B = 3575.134618 C = 5331.900343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.087 3.913 3 N -0.330 5.330 4 N -0.476 5.476 5 H 0.448 0.552 6 C 0.066 3.934 7 C -0.227 4.227 8 C 0.140 3.860 9 N -0.515 5.515 10 C 0.171 3.829 11 C -0.523 4.523 12 H 0.050 0.950 13 C 0.030 3.970 14 N -0.939 5.939 15 Si 0.922 3.078 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.263 1.263 19 C 0.110 3.890 20 C 0.134 3.866 21 C -0.173 4.173 22 C -0.088 4.088 23 C -0.173 4.173 24 C 0.083 3.917 25 N -0.491 5.491 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.177 0.823 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.263 0.737 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 5.298 -2.137 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.080 4.080 3 N -0.155 5.155 4 N -0.185 5.185 5 H 0.294 0.706 6 C -0.083 4.083 7 C -0.239 4.239 8 C 0.012 3.988 9 N -0.238 5.238 10 C 0.044 3.956 11 C -0.562 4.562 12 H 0.068 0.932 13 C -0.168 4.168 14 N -0.579 5.579 15 Si 0.748 3.252 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.187 1.187 19 C -0.018 4.018 20 C -0.003 4.003 21 C -0.194 4.194 22 C -0.114 4.114 23 C -0.193 4.193 24 C -0.074 4.074 25 N -0.201 5.201 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.194 0.806 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.135 0.865 38 H 0.167 0.833 39 H 0.184 0.816 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.068 7.391 -1.731 13.421 hybrid contribution 2.595 -1.780 -0.975 3.294 sum -8.472 5.612 -2.707 10.517 Atomic orbital electron populations 1.20201 0.85106 1.03676 1.03498 1.22614 0.98128 0.89698 0.97552 1.77098 0.87487 1.23254 1.27671 1.46101 1.07209 1.05238 1.59962 0.70592 1.22641 1.00007 0.85415 1.00197 1.19964 0.91943 0.96189 1.15800 1.20137 0.99084 0.90097 0.89508 1.62381 1.20741 1.30105 1.10592 1.19861 0.88232 0.94471 0.93078 1.21715 1.03286 1.17924 1.13282 0.93218 1.25495 0.96651 0.95547 0.99144 1.70034 1.12678 1.32806 1.42411 0.86095 0.78735 0.79222 0.81167 1.19591 1.21263 1.18737 1.20793 0.96087 0.92555 0.92355 1.21069 0.90753 0.92077 0.96399 1.22175 1.00813 1.00610 0.95797 1.21885 0.95732 0.98099 0.95705 1.22435 0.96188 0.98441 1.02194 1.23301 1.00019 0.95644 0.88460 1.67469 1.10970 1.21091 1.20535 0.89197 0.90927 0.89934 0.80553 0.89850 0.94664 0.96772 0.96622 0.92760 0.89209 0.94010 0.86467 0.83295 0.81550 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 10.26 71.24 0.73 -1.04 16 2 C 0.09 2.90 7.22 43.10 0.31 3.21 16 3 N -0.33 -11.14 12.70 -47.39 -0.60 -11.74 16 4 N -0.48 -14.36 7.36 -57.58 -0.42 -14.78 16 5 H 0.45 10.18 8.96 -213.33 -1.91 8.27 16 6 C 0.07 2.23 11.26 83.54 0.94 3.17 16 7 C -0.23 -8.10 4.92 -20.14 -0.10 -8.19 16 8 C 0.14 5.16 4.93 85.56 0.42 5.59 16 9 N -0.52 -20.56 4.65 -909.96 -4.23 -24.79 16 10 C 0.17 7.88 3.72 85.56 0.32 8.20 16 11 C -0.52 -27.00 7.89 25.60 0.20 -26.80 16 12 H 0.05 2.82 6.19 -2.91 -0.02 2.80 16 13 C 0.03 1.64 5.47 84.66 0.46 2.10 16 14 N -0.94 -54.62 13.96 21.45 0.30 -54.32 16 15 Si 0.92 42.80 27.42 68.60 1.88 44.68 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.26 -12.04 6.62 99.48 0.66 -11.39 16 19 C 0.11 4.18 5.09 85.56 0.44 4.61 16 20 C 0.13 4.95 5.64 42.56 0.24 5.19 16 21 C -0.17 -6.30 8.31 22.36 0.19 -6.11 16 22 C -0.09 -2.53 10.18 22.47 0.23 -2.30 16 23 C -0.17 -4.09 10.11 22.36 0.23 -3.87 16 24 C 0.08 2.17 11.18 84.67 0.95 3.12 16 25 N -0.49 -16.50 10.27 -183.88 -1.89 -18.39 16 26 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.34 7.96 -2.39 -0.02 2.32 16 29 H 0.18 5.89 8.06 -2.91 -0.02 5.86 16 30 H 0.08 2.68 7.82 -2.39 -0.02 2.66 16 31 H 0.04 1.47 6.36 -2.39 -0.02 1.45 16 32 H 0.01 0.69 5.52 -2.39 -0.01 0.68 16 33 H 0.02 0.75 6.21 -2.39 -0.01 0.74 16 34 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.09 3.02 7.86 -2.39 -0.02 3.01 16 36 H 0.04 1.76 6.28 -2.39 -0.02 1.74 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -66.30 331.40 -0.31 -66.61 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.90 Total: 25.85 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.55 Total: -13.12 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -6.85 Total: -124.03 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -66.30 -0.31 -66.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.713 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds