Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.47436 * 2 1 4 4 C 1.46900 * 111.00152 * 287.97604 * 3 2 1 5 5 C 1.50694 * 109.47424 * 160.35879 * 4 3 2 6 6 H 1.08003 * 120.00246 * 4.90571 * 5 4 3 7 7 C 1.37884 * 120.00121 * 184.90287 * 5 4 3 8 8 N 1.31508 * 120.00206 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99782 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46833 * 90.00331 * 9 7 5 11 11 H 1.48499 * 109.47027 * 209.99950 * 9 7 5 12 12 H 1.48502 * 109.47529 * 330.00354 * 9 7 5 13 13 C 1.46891 * 111.00537 * 164.01768 * 3 2 1 14 14 N 1.46498 * 109.47493 * 293.95761 * 13 3 2 15 15 C 1.34519 * 126.74312 * 94.99483 * 14 13 3 16 16 N 1.30685 * 108.29332 * 180.02562 * 15 14 13 17 17 C 1.33980 * 109.78024 * 359.97438 * 16 15 14 18 18 C 1.48405 * 125.64745 * 179.73339 * 17 16 15 19 19 C 1.39331 * 120.11452 * 179.75023 * 18 17 16 20 20 C 1.38024 * 119.87485 * 179.69913 * 19 18 17 21 21 C 1.38318 * 120.11889 * 0.58274 * 20 19 18 22 22 C 1.38318 * 120.24418 * 359.71248 * 21 20 19 23 23 C 1.38016 * 120.11837 * 359.97438 * 22 21 20 24 24 N 1.31492 * 108.69946 * 0.02562 * 17 16 15 25 25 H 1.09002 * 109.46734 * 299.32804 * 1 2 3 26 26 H 1.08998 * 109.47033 * 59.32237 * 1 2 3 27 27 H 1.08999 * 109.46954 * 179.32896 * 1 2 3 28 28 H 1.08996 * 109.47526 * 240.00213 * 2 1 3 29 29 H 1.09002 * 109.47542 * 119.99818 * 2 1 3 30 30 H 1.08997 * 109.47112 * 280.36891 * 4 3 2 31 31 H 1.09011 * 109.47122 * 40.36046 * 4 3 2 32 32 H 0.96996 * 120.00382 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47370 * 173.95393 * 13 3 2 34 34 H 1.09004 * 109.47256 * 53.95366 * 13 3 2 35 35 H 1.07997 * 125.85641 * 359.97438 * 15 14 13 36 36 H 1.08003 * 120.06584 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.94046 * 180.31747 * 20 19 18 38 38 H 1.08005 * 119.88028 * 179.74482 * 21 20 19 39 39 H 1.08003 * 119.93736 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.05931 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7962 2.0224 -1.3045 5 6 1.8475 3.5203 -1.1471 6 1 2.1063 3.9544 -0.1926 7 6 1.5642 4.3365 -2.2216 8 7 1.6095 5.6437 -2.0844 9 14 1.1175 3.5856 -3.8727 10 1 -0.3532 3.3944 -3.9478 11 1 1.5550 4.4930 -4.9638 12 1 1.7955 2.2725 -4.0191 13 6 3.4382 1.4419 0.3776 14 7 3.5898 1.0186 1.7719 15 6 3.8924 -0.2169 2.2094 16 7 3.9360 -0.1903 3.5153 17 6 3.6669 1.0471 3.9529 18 6 3.6177 1.4701 5.3745 19 6 3.3304 2.7939 5.7004 20 6 3.2798 3.1806 7.0244 21 6 3.5254 2.2593 8.0264 22 6 3.8170 0.9452 7.7083 23 6 3.8639 0.5462 6.3879 24 7 3.4476 1.8231 2.9143 25 1 -0.3633 0.5034 0.8960 26 1 -0.3633 0.5243 -0.8838 27 1 -0.3633 -1.0276 -0.0120 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.5706 1.7036 -2.0021 31 1 0.8187 1.7308 -1.6887 32 1 1.4106 6.2179 -2.8404 33 1 3.8032 2.4629 0.2661 34 1 4.0130 0.7780 -0.2682 35 1 4.0682 -1.0826 1.5882 36 1 3.1434 3.5153 4.9186 37 1 3.0521 4.2054 7.2783 38 1 3.4887 2.5670 9.0610 39 1 4.0076 0.2298 8.4947 40 1 4.0914 -0.4802 6.1406 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117862562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = 128.869234 kcal Electronic energy + Delta-G solvation = -21724.746530 eV Core-core repulsion = 18541.813129 eV Total energy + Delta-G solvation = -3182.933401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82739 -38.92880 -37.43693 -33.41684 -32.62003 -31.80888 -30.95950 -30.42029 -29.90834 -27.60502 -25.10061 -23.32488 -22.75512 -22.52503 -21.26922 -20.44645 -19.98922 -17.41455 -17.03843 -16.41237 -15.95533 -15.48527 -15.09301 -14.69569 -14.46487 -14.08383 -13.90823 -13.76606 -13.45684 -13.36774 -12.93247 -12.76568 -12.48289 -12.04111 -11.79382 -11.55502 -11.35004 -11.26423 -11.08124 -11.03305 -10.65515 -10.42049 -10.14752 -9.98349 -9.80022 -9.63709 -9.39481 -8.93755 -8.67369 -8.40522 -7.74641 -6.14817 -4.14235 0.97868 1.41917 1.97600 2.54372 3.11717 3.19398 3.26309 3.28093 3.99644 4.09113 4.30796 4.38664 4.66073 4.82566 4.95602 4.99561 5.12583 5.15518 5.29321 5.36744 5.46954 5.55786 5.68132 5.75043 5.79158 5.85352 5.99971 6.06855 6.18918 6.24236 6.45964 6.48669 6.52410 6.56101 6.59426 6.61860 6.65926 6.93870 7.01812 7.39768 7.60874 7.69884 8.26903 8.49859 8.95813 9.44679 10.98067 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.003752 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.674341 B = 7460.721358 C = 8221.079516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.536 5.536 4 C 0.169 3.831 5 C -0.517 4.517 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.299 3.701 14 N -0.355 5.355 15 C 0.247 3.753 16 N -0.541 5.541 17 C 0.239 3.761 18 C -0.002 4.002 19 C -0.085 4.085 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.128 4.128 23 C -0.082 4.082 24 N -0.273 5.273 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.059 0.941 30 H -0.006 1.006 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.214 0.786 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 -12.039 12.557 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.262 5.262 4 C 0.044 3.956 5 C -0.555 4.555 6 H 0.101 0.899 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.088 3.912 14 N -0.147 5.147 15 C -0.051 4.051 16 N -0.268 5.268 17 C -0.040 4.040 18 C -0.005 4.005 19 C -0.105 4.105 20 C -0.142 4.142 21 C -0.132 4.132 22 C -0.147 4.147 23 C -0.102 4.102 24 N -0.102 5.102 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.011 0.989 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.070 -11.096 12.859 17.465 hybrid contribution 0.073 -0.903 -1.991 2.187 sum 4.143 -11.998 10.868 16.711 Atomic orbital electron populations 1.21714 0.94733 1.00425 1.03119 1.22145 0.97036 0.90063 0.99286 1.61830 1.14822 1.15274 1.34271 1.20190 0.96062 0.96149 0.83221 1.21016 1.47619 0.87848 0.99037 0.89889 1.24889 0.94945 0.94699 0.98501 1.69884 1.48908 1.02887 1.31508 0.86911 0.79322 0.79425 0.84343 1.20056 1.21034 1.19338 1.22279 0.91397 1.03293 0.74254 1.50722 1.49520 1.06877 1.07604 1.25830 0.97307 0.90308 0.91614 1.70404 1.25533 1.21931 1.08946 1.22270 1.00122 0.87847 0.93787 1.17483 1.02373 0.93811 0.86819 1.21320 0.97118 0.95030 0.97059 1.21087 1.00864 0.99907 0.92372 1.21246 0.99116 0.93558 0.99285 1.21059 1.01325 0.96272 0.95995 1.21194 0.97545 0.99733 0.91722 1.78376 1.22718 1.17723 0.91340 0.92094 0.92078 0.93096 0.95259 0.92274 0.98887 0.94607 0.92486 0.85799 0.91520 0.77009 0.84843 0.85594 0.86046 0.85785 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.99 37.16 0.37 -1.85 16 2 C 0.04 0.68 5.60 -3.82 -0.02 0.66 16 3 N -0.54 -10.45 4.52 -239.99 -1.08 -11.54 16 4 C 0.17 3.77 3.65 -4.98 -0.02 3.75 16 5 C -0.52 -14.03 9.17 -34.44 -0.32 -14.34 16 6 H 0.08 2.52 7.89 -52.48 -0.41 2.11 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 9 Si 0.87 20.44 27.37 -169.99 -4.65 15.78 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -5.94 6.69 56.52 0.38 -5.56 16 13 C 0.30 5.17 6.04 -63.33 -0.38 4.79 16 14 N -0.36 -6.01 3.52 -65.66 -0.23 -6.24 16 15 C 0.25 3.51 10.91 -90.70 -0.99 2.52 16 16 N -0.54 -8.68 10.82 -12.38 -0.13 -8.82 16 17 C 0.24 4.14 7.78 -156.63 -1.22 2.92 16 18 C 0.00 -0.03 5.88 -104.90 -0.62 -0.65 16 19 C -0.09 -1.20 9.68 -39.25 -0.38 -1.58 16 20 C -0.12 -1.41 10.03 -39.63 -0.40 -1.81 16 21 C -0.11 -1.14 10.04 -39.52 -0.40 -1.53 16 22 C -0.13 -1.34 10.03 -39.63 -0.40 -1.73 16 23 C -0.08 -1.04 9.69 -39.26 -0.38 -1.42 16 24 N -0.27 -5.23 12.33 32.10 0.40 -4.83 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 1.02 6.52 -51.93 -0.34 0.68 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.42 8.05 -51.93 -0.42 0.01 16 29 H 0.06 0.87 5.89 -51.93 -0.31 0.56 16 30 H -0.01 -0.14 7.40 -51.93 -0.38 -0.52 16 31 H 0.04 0.80 5.40 -51.92 -0.28 0.52 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.12 2.45 7.32 -51.93 -0.38 2.07 16 34 H 0.07 0.94 8.11 -51.93 -0.42 0.51 16 35 H 0.21 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.13 2.00 7.83 -52.48 -0.41 1.59 16 37 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.13 1.61 7.84 -52.48 -0.41 1.20 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -32.16 336.46 -10.56 -42.72 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.46 Total: 2.13 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -5.24 Total: -8.37 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.28 Total: -57.33 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.65 Total: 15.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.16 -10.56 -42.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117862562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.589 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds