Wall clock time and date at job start Tue Mar 31 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.47436 * 2 1 4 4 C 1.46900 * 111.00152 * 287.97604 * 3 2 1 5 5 C 1.50694 * 109.47424 * 160.35879 * 4 3 2 6 6 H 1.08003 * 120.00246 * 4.90571 * 5 4 3 7 7 C 1.37884 * 120.00121 * 184.90287 * 5 4 3 8 8 N 1.31508 * 120.00206 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99782 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46833 * 90.00331 * 9 7 5 11 11 H 1.48499 * 109.47027 * 209.99950 * 9 7 5 12 12 H 1.48502 * 109.47529 * 330.00354 * 9 7 5 13 13 C 1.46891 * 111.00537 * 164.01768 * 3 2 1 14 14 N 1.46498 * 109.47493 * 293.95761 * 13 3 2 15 15 C 1.34519 * 126.74312 * 94.99483 * 14 13 3 16 16 N 1.30685 * 108.29332 * 180.02562 * 15 14 13 17 17 C 1.33980 * 109.78024 * 359.97438 * 16 15 14 18 18 C 1.48405 * 125.64745 * 179.73339 * 17 16 15 19 19 C 1.39331 * 120.11452 * 179.75023 * 18 17 16 20 20 C 1.38024 * 119.87485 * 179.69913 * 19 18 17 21 21 C 1.38318 * 120.11889 * 0.58274 * 20 19 18 22 22 C 1.38318 * 120.24418 * 359.71248 * 21 20 19 23 23 C 1.38016 * 120.11837 * 359.97438 * 22 21 20 24 24 N 1.31492 * 108.69946 * 0.02562 * 17 16 15 25 25 H 1.09002 * 109.46734 * 299.32804 * 1 2 3 26 26 H 1.08998 * 109.47033 * 59.32237 * 1 2 3 27 27 H 1.08999 * 109.46954 * 179.32896 * 1 2 3 28 28 H 1.08996 * 109.47526 * 240.00213 * 2 1 3 29 29 H 1.09002 * 109.47542 * 119.99818 * 2 1 3 30 30 H 1.08997 * 109.47112 * 280.36891 * 4 3 2 31 31 H 1.09011 * 109.47122 * 40.36046 * 4 3 2 32 32 H 0.96996 * 120.00382 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47370 * 173.95393 * 13 3 2 34 34 H 1.09004 * 109.47256 * 53.95366 * 13 3 2 35 35 H 1.07997 * 125.85641 * 359.97438 * 15 14 13 36 36 H 1.08003 * 120.06584 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.94046 * 180.31747 * 20 19 18 38 38 H 1.08005 * 119.88028 * 179.74482 * 21 20 19 39 39 H 1.08003 * 119.93736 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.05931 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7962 2.0224 -1.3045 5 6 1.8475 3.5203 -1.1471 6 1 2.1063 3.9544 -0.1926 7 6 1.5642 4.3365 -2.2216 8 7 1.6095 5.6437 -2.0844 9 14 1.1175 3.5856 -3.8727 10 1 -0.3532 3.3944 -3.9478 11 1 1.5550 4.4930 -4.9638 12 1 1.7955 2.2725 -4.0191 13 6 3.4382 1.4419 0.3776 14 7 3.5898 1.0186 1.7719 15 6 3.8924 -0.2169 2.2094 16 7 3.9360 -0.1903 3.5153 17 6 3.6669 1.0471 3.9529 18 6 3.6177 1.4701 5.3745 19 6 3.3304 2.7939 5.7004 20 6 3.2798 3.1806 7.0244 21 6 3.5254 2.2593 8.0264 22 6 3.8170 0.9452 7.7083 23 6 3.8639 0.5462 6.3879 24 7 3.4476 1.8231 2.9143 25 1 -0.3633 0.5034 0.8960 26 1 -0.3633 0.5243 -0.8838 27 1 -0.3633 -1.0276 -0.0120 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.5706 1.7036 -2.0021 31 1 0.8187 1.7308 -1.6887 32 1 1.4106 6.2179 -2.8404 33 1 3.8032 2.4629 0.2661 34 1 4.0130 0.7780 -0.2682 35 1 4.0682 -1.0826 1.5882 36 1 3.1434 3.5153 4.9186 37 1 3.0521 4.2054 7.2783 38 1 3.4887 2.5670 9.0610 39 1 4.0076 0.2298 8.4947 40 1 4.0914 -0.4802 6.1406 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117862562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:11 Heat of formation + Delta-G solvation = 109.186271 kcal Electronic energy + Delta-G solvation = -21725.600047 eV Core-core repulsion = 18541.813129 eV Total energy + Delta-G solvation = -3183.786918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.05612 -39.88645 -38.87860 -34.95766 -34.36713 -32.94648 -32.00121 -31.70841 -31.19275 -29.27339 -26.47506 -24.44984 -24.20012 -23.76922 -22.39498 -21.75172 -21.29500 -19.06299 -18.54027 -17.53195 -17.39150 -16.58055 -16.36117 -16.08756 -15.73053 -15.56655 -15.19057 -15.05466 -14.61185 -14.45246 -14.28689 -14.18428 -13.79903 -13.64256 -13.06436 -12.98748 -12.69524 -12.59726 -12.31369 -12.24808 -12.01009 -11.94900 -11.74704 -11.61886 -11.17421 -11.05206 -10.89062 -10.77892 -9.87386 -9.48751 -9.18948 -8.29000 -6.34294 -0.06695 0.48382 0.83384 1.30129 1.35914 1.37838 1.47631 1.98409 2.33416 2.95603 2.98846 3.03696 3.09485 3.48282 3.75118 3.99454 4.04644 4.12933 4.23192 4.28384 4.32230 4.37545 4.55636 4.57239 4.66801 4.71077 4.80683 4.87971 4.93133 5.05920 5.14788 5.15392 5.25366 5.30056 5.51021 5.57084 5.57391 5.61391 5.78406 5.98645 6.04998 6.16255 6.53885 6.73402 7.04259 7.29132 8.88340 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.003752 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.674341 B = 7460.721358 C = 8221.079516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.566 5.566 4 C 0.182 3.818 5 C -0.521 4.521 6 H 0.026 0.974 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.238 1.238 13 C 0.306 3.694 14 N -0.367 5.367 15 C 0.263 3.737 16 N -0.554 5.554 17 C 0.239 3.761 18 C -0.037 4.037 19 C -0.108 4.108 20 C -0.127 4.127 21 C -0.102 4.102 22 C -0.121 4.121 23 C -0.086 4.086 24 N -0.333 5.333 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.010 0.990 31 H 0.042 0.958 32 H 0.267 0.733 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.265 0.735 36 H 0.107 0.893 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -15.629 12.903 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.293 5.293 4 C 0.056 3.944 5 C -0.559 4.559 6 H 0.044 0.956 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.161 1.161 13 C 0.095 3.905 14 N -0.159 5.159 15 C -0.033 4.033 16 N -0.282 5.282 17 C -0.040 4.040 18 C -0.039 4.039 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.106 4.106 24 N -0.162 5.162 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.281 0.719 36 H 0.126 0.874 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.299 -14.718 13.230 20.252 hybrid contribution 0.038 0.232 -1.873 1.888 sum 4.337 -14.485 11.357 18.911 Atomic orbital electron populations 1.21724 0.94856 1.02077 1.01208 1.22227 0.96895 0.87941 1.01180 1.61565 1.16685 1.18039 1.32969 1.19891 0.96703 0.92733 0.85105 1.21254 1.46764 0.91142 0.96762 0.95553 1.25917 0.94815 0.94942 1.03351 1.70075 1.50965 1.04967 1.33063 0.85674 0.79374 0.79593 0.78016 1.19350 1.21069 1.16095 1.22130 0.90782 1.02365 0.75252 1.50619 1.50719 1.07666 1.06867 1.26846 0.94488 0.90394 0.91542 1.70449 1.26468 1.21331 1.09912 1.22767 0.98705 0.88099 0.94457 1.17734 1.04827 0.94799 0.86558 1.21283 0.98932 0.94620 0.97976 1.21370 1.00233 1.01427 0.91413 1.21697 0.96750 0.92964 1.00632 1.21485 0.99499 0.97195 0.95658 1.21333 0.97567 0.99414 0.92321 1.78336 1.25363 1.19803 0.92671 0.94546 0.93393 0.89651 0.92428 0.90926 0.97234 0.94006 0.92448 0.89911 0.87052 0.71920 0.87442 0.83658 0.82268 0.82237 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.99 71.98 0.72 -3.42 16 2 C 0.04 1.30 5.60 86.30 0.48 1.78 16 3 N -0.57 -21.92 4.52 -913.18 -4.13 -26.04 16 4 C 0.18 8.00 3.65 85.56 0.31 8.32 16 5 C -0.52 -29.54 9.17 25.60 0.23 -29.31 16 6 H 0.03 1.74 7.89 -2.91 -0.02 1.72 16 7 C 0.01 0.40 5.47 84.66 0.46 0.86 16 8 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 9 Si 0.95 42.05 27.37 68.60 1.88 43.93 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.24 -9.28 6.69 99.48 0.67 -8.62 16 13 C 0.31 10.62 6.04 170.81 1.03 11.65 16 14 N -0.37 -12.54 3.52 -361.66 -1.27 -13.81 16 15 C 0.26 7.03 10.91 180.37 1.97 9.00 16 16 N -0.55 -17.50 10.82 -193.09 -2.09 -19.59 16 17 C 0.24 8.62 7.78 137.47 1.07 9.69 16 18 C -0.04 -1.15 5.88 -20.04 -0.12 -1.27 16 19 C -0.11 -3.24 9.68 22.48 0.22 -3.02 16 20 C -0.13 -2.81 10.03 22.24 0.22 -2.58 16 21 C -0.10 -1.76 10.04 22.31 0.22 -1.54 16 22 C -0.12 -2.18 10.03 22.24 0.22 -1.96 16 23 C -0.09 -2.13 9.69 22.48 0.22 -1.91 16 24 N -0.33 -13.60 12.33 -52.35 -0.65 -14.25 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.52 6.52 -2.39 -0.02 1.50 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 1.39 8.05 -2.39 -0.02 1.37 16 29 H 0.07 1.91 5.89 -2.39 -0.01 1.89 16 30 H 0.01 0.41 7.40 -2.39 -0.02 0.39 16 31 H 0.04 1.80 5.40 -2.38 -0.01 1.79 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.08 3.52 7.32 -2.39 -0.02 3.51 16 34 H 0.11 2.83 8.11 -2.38 -0.02 2.81 16 35 H 0.27 3.78 8.06 -2.91 -0.02 3.75 16 36 H 0.11 3.67 7.83 -2.91 -0.02 3.65 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.14 3.17 7.84 -2.91 -0.02 3.15 16 Total: -1.00 -77.08 336.46 2.30 -74.78 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.99 Total: 17.89 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 7.27 Total: -3.70 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -7.84 Total: -132.90 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.93 kcal Total: -77.08 2.30 -74.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117862562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.969 kcal (2) G-P(sol) polarization free energy of solvation -77.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds