Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28713 * 125.87197 * 2 1 4 4 N 1.28632 * 110.17975 * 179.70317 * 3 2 1 5 5 C 1.33767 * 108.88855 * 0.44871 * 4 3 2 6 6 C 1.35314 * 125.86616 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.91532 * 0.05787 * 6 2 1 8 8 N 1.46902 * 109.47153 * 274.98298 * 7 6 2 9 9 C 1.46893 * 110.99905 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47673 * 324.99929 * 9 8 7 11 11 C 1.52997 * 109.47320 * 204.99898 * 9 8 7 12 12 C 1.50697 * 109.46988 * 64.99785 * 11 9 8 13 13 H 1.07999 * 120.00064 * 0.02562 * 12 11 9 14 14 C 1.37885 * 120.00146 * 180.02562 * 12 11 9 15 15 N 1.31511 * 119.99752 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00000 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47273 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47478 * 119.99970 * 16 14 12 19 19 H 1.48508 * 109.46814 * 239.99710 * 16 14 12 20 20 C 1.50700 * 109.47425 * 84.99847 * 9 8 7 21 21 C 1.38234 * 119.99695 * 39.72426 * 20 9 8 22 22 C 1.38240 * 120.00192 * 179.81414 * 21 20 9 23 23 C 1.38232 * 119.99761 * 0.39293 * 22 21 20 24 24 C 1.38238 * 120.00100 * 359.86018 * 23 22 21 25 25 C 1.38230 * 120.00487 * 219.99952 * 20 9 8 26 26 H 1.08996 * 109.47269 * 270.02768 * 1 2 3 27 27 H 1.09005 * 109.46889 * 30.02435 * 1 2 3 28 28 H 1.09003 * 109.47070 * 150.02098 * 1 2 3 29 29 H 1.08002 * 126.75726 * 179.83217 * 5 4 3 30 30 H 1.09000 * 109.46761 * 34.98229 * 7 6 2 31 31 H 1.09001 * 109.47170 * 154.98159 * 7 6 2 32 32 H 1.00895 * 110.99792 * 303.95153 * 8 7 6 33 33 H 1.08994 * 109.47538 * 185.00192 * 11 9 8 34 34 H 1.09008 * 109.47085 * 305.00026 * 11 9 8 35 35 H 0.96995 * 119.99980 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.00392 * 359.97438 * 21 20 9 37 37 H 1.07995 * 120.00285 * 180.23388 * 22 21 20 38 38 H 1.08002 * 120.00400 * 179.83944 * 23 22 21 39 39 H 1.07994 * 120.00444 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.99780 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6951 0.0063 5 6 3.5322 -0.6405 0.0007 6 6 2.2578 -1.0966 0.0005 7 6 1.8117 -2.5360 -0.0001 8 7 1.5507 -2.9684 1.3794 9 6 1.1121 -4.3698 1.4178 10 1 0.5066 -4.5853 0.5375 11 6 0.2809 -4.6097 2.6797 12 6 -0.9862 -3.7972 2.6085 13 1 -1.1796 -3.1725 1.7490 14 6 -1.8988 -3.8513 3.6407 15 7 -1.6631 -4.6116 4.6876 16 14 -3.4699 -2.8447 3.5521 17 1 -3.4958 -2.0785 2.2804 18 1 -4.6435 -3.7528 3.6074 19 1 -3.5191 -1.9020 4.6986 20 6 2.3181 -5.2734 1.4314 21 6 3.4290 -4.9321 2.1798 22 6 4.5339 -5.7628 2.1954 23 6 4.5308 -6.9308 1.4560 24 6 3.4219 -7.2695 0.7034 25 6 2.3156 -6.4406 0.6909 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 4.4322 -1.2375 0.0012 30 1 0.9003 -2.6337 -0.5900 31 1 2.5940 -3.1587 -0.4341 32 1 2.3620 -2.8269 1.9622 33 1 0.0304 -5.6679 2.7540 34 1 0.8559 -4.3100 3.5560 35 1 -2.3049 -4.6494 5.4139 36 1 3.4329 -4.0177 2.7545 37 1 5.4003 -5.4981 2.7831 38 1 5.3949 -7.5786 1.4660 39 1 3.4196 -8.1818 0.1254 40 1 1.4492 -6.7053 0.1030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130493442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = 123.231503 kcal Electronic energy + Delta-G solvation = -22258.085936 eV Core-core repulsion = 19074.908065 eV Total energy + Delta-G solvation = -3183.177871 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.07453 -39.32436 -36.38755 -34.45740 -33.21509 -32.08549 -30.71705 -29.93530 -28.73779 -27.74164 -25.51507 -24.05518 -22.42427 -22.30237 -21.95631 -20.56423 -19.78202 -17.36831 -16.80643 -16.47288 -16.15005 -15.17031 -15.00643 -14.79051 -14.54589 -14.18190 -14.00699 -13.66167 -13.14025 -13.08681 -12.91020 -12.73328 -12.56547 -12.16644 -12.13779 -11.58999 -11.27438 -11.13068 -10.97971 -10.78960 -10.66816 -10.56718 -10.27352 -9.90134 -9.76025 -9.17848 -9.03948 -8.69753 -8.37485 -8.31565 -7.94647 -5.99007 -3.98270 1.60784 1.62757 1.74152 2.56601 2.70611 3.28956 3.36535 3.38043 4.03085 4.44457 4.45922 4.61607 4.77831 5.04823 5.07952 5.13069 5.14165 5.19215 5.24111 5.36406 5.38708 5.53723 5.61613 5.66701 5.75043 5.79118 5.92718 6.04239 6.22612 6.27531 6.29111 6.64744 6.68817 6.70613 6.72850 6.86635 7.24337 7.31076 7.51665 7.79592 7.83708 8.00321 8.42862 8.66257 9.05883 9.63172 11.12808 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.008311 B = 0.007806 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3368.401264 B = 3586.184083 C = 6458.295014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.275 5.275 3 N -0.096 5.096 4 N -0.277 5.277 5 C -0.055 4.055 6 C 0.001 3.999 7 C 0.127 3.873 8 N -0.656 5.656 9 C 0.131 3.869 10 H 0.077 0.923 11 C 0.042 3.958 12 C -0.492 4.492 13 H 0.058 0.942 14 C 0.052 3.948 15 N -0.899 5.899 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.286 1.286 20 C -0.095 4.095 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.135 4.135 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.184 0.816 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.339 0.661 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.258 0.742 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.476 -0.448 -10.124 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.068 5.068 3 N -0.076 5.076 4 N -0.142 5.142 5 C -0.214 4.214 6 C -0.133 4.133 7 C -0.004 4.004 8 N -0.288 5.288 9 C 0.022 3.978 10 H 0.095 0.905 11 C 0.004 3.996 12 C -0.530 4.530 13 H 0.077 0.923 14 C -0.148 4.148 15 N -0.539 5.539 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.096 4.096 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.153 4.153 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.201 0.799 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.747 1.351 -9.948 12.681 hybrid contribution -0.226 -1.238 0.078 1.261 sum 7.521 0.113 -9.870 12.410 Atomic orbital electron populations 1.22300 0.72341 1.05119 1.06091 1.47143 1.09542 1.04357 1.45757 1.78247 0.96584 1.12037 1.20683 1.75018 1.09827 1.12484 1.16899 1.23310 0.97075 0.92054 1.08954 1.22202 0.90904 0.91978 1.08200 1.20399 1.00494 0.86249 0.93271 1.60734 1.39881 1.21587 1.06605 1.20982 0.91113 0.82737 1.02966 0.90491 1.19096 0.93754 0.96848 0.89860 1.21077 1.02565 1.25345 1.04060 0.92330 1.25004 0.98288 0.95807 0.95696 1.69964 1.36086 1.39656 1.08230 0.86595 0.83729 0.80109 0.77808 1.19897 1.21320 1.21273 1.21117 0.96464 0.96802 0.95256 1.20966 0.93382 1.00161 0.99188 1.21068 0.98265 0.94961 0.99298 1.21033 0.98417 0.97372 0.98491 1.21091 0.93882 0.99322 0.99591 1.21070 0.98074 0.94608 0.99707 0.88081 0.88711 0.88151 0.79867 0.89845 0.92816 0.84105 0.96075 0.96214 0.93218 0.86210 0.86530 0.86739 0.86613 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 11.21 59.84 0.67 1.62 16 2 N -0.27 -4.01 3.74 -63.79 -0.24 -4.24 16 3 N -0.10 -1.60 13.16 60.35 0.79 -0.80 16 4 N -0.28 -4.65 12.41 30.24 0.38 -4.27 16 5 C -0.06 -0.79 11.99 -17.74 -0.21 -1.00 16 6 C 0.00 0.01 6.51 -82.08 -0.53 -0.52 16 7 C 0.13 1.68 5.70 -4.97 -0.03 1.65 16 8 N -0.66 -10.60 5.93 -109.23 -0.65 -11.25 16 9 C 0.13 2.32 2.17 -68.87 -0.15 2.17 16 10 H 0.08 1.34 7.66 -51.93 -0.40 0.94 16 11 C 0.04 0.98 4.63 -27.89 -0.13 0.85 16 12 C -0.49 -12.68 8.84 -34.44 -0.30 -12.98 16 13 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 15 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 16 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 C -0.09 -1.50 4.71 -104.63 -0.49 -1.99 16 21 C -0.12 -1.76 9.12 -39.58 -0.36 -2.12 16 22 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 23 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 24 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 25 C -0.12 -1.68 9.67 -39.58 -0.38 -2.07 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.02 7.22 -51.93 -0.38 0.65 16 29 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.08 1.05 7.23 -51.93 -0.38 0.68 16 31 H 0.05 0.65 8.00 -51.93 -0.42 0.24 16 32 H 0.34 5.38 6.33 -39.29 -0.25 5.14 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.12 1.74 6.50 -52.49 -0.34 1.40 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -31.38 341.38 -7.57 -38.95 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.50 Total: 5.17 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -3.21 Total: -19.03 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 1.02 Total: -45.98 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.38 -7.57 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130493442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.178 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds