Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28713 * 125.87197 * 2 1 4 4 N 1.28632 * 110.17975 * 179.70317 * 3 2 1 5 5 C 1.33767 * 108.88855 * 0.44871 * 4 3 2 6 6 C 1.35314 * 125.86616 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.91532 * 0.05787 * 6 2 1 8 8 N 1.46902 * 109.47153 * 274.98298 * 7 6 2 9 9 C 1.46893 * 110.99905 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47673 * 324.99929 * 9 8 7 11 11 C 1.52997 * 109.47320 * 204.99898 * 9 8 7 12 12 C 1.50697 * 109.46988 * 64.99785 * 11 9 8 13 13 H 1.07999 * 120.00064 * 0.02562 * 12 11 9 14 14 C 1.37885 * 120.00146 * 180.02562 * 12 11 9 15 15 N 1.31511 * 119.99752 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00000 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47273 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47478 * 119.99970 * 16 14 12 19 19 H 1.48508 * 109.46814 * 239.99710 * 16 14 12 20 20 C 1.50700 * 109.47425 * 84.99847 * 9 8 7 21 21 C 1.38234 * 119.99695 * 39.72426 * 20 9 8 22 22 C 1.38240 * 120.00192 * 179.81414 * 21 20 9 23 23 C 1.38232 * 119.99761 * 0.39293 * 22 21 20 24 24 C 1.38238 * 120.00100 * 359.86018 * 23 22 21 25 25 C 1.38230 * 120.00487 * 219.99952 * 20 9 8 26 26 H 1.08996 * 109.47269 * 270.02768 * 1 2 3 27 27 H 1.09005 * 109.46889 * 30.02435 * 1 2 3 28 28 H 1.09003 * 109.47070 * 150.02098 * 1 2 3 29 29 H 1.08002 * 126.75726 * 179.83217 * 5 4 3 30 30 H 1.09000 * 109.46761 * 34.98229 * 7 6 2 31 31 H 1.09001 * 109.47170 * 154.98159 * 7 6 2 32 32 H 1.00895 * 110.99792 * 303.95153 * 8 7 6 33 33 H 1.08994 * 109.47538 * 185.00192 * 11 9 8 34 34 H 1.09008 * 109.47085 * 305.00026 * 11 9 8 35 35 H 0.96995 * 119.99980 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.00392 * 359.97438 * 21 20 9 37 37 H 1.07995 * 120.00285 * 180.23388 * 22 21 20 38 38 H 1.08002 * 120.00400 * 179.83944 * 23 22 21 39 39 H 1.07994 * 120.00444 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.99780 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6951 0.0063 5 6 3.5322 -0.6405 0.0007 6 6 2.2578 -1.0966 0.0005 7 6 1.8117 -2.5360 -0.0001 8 7 1.5507 -2.9684 1.3794 9 6 1.1121 -4.3698 1.4178 10 1 0.5066 -4.5853 0.5375 11 6 0.2809 -4.6097 2.6797 12 6 -0.9862 -3.7972 2.6085 13 1 -1.1796 -3.1725 1.7490 14 6 -1.8988 -3.8513 3.6407 15 7 -1.6631 -4.6116 4.6876 16 14 -3.4699 -2.8447 3.5521 17 1 -3.4958 -2.0785 2.2804 18 1 -4.6435 -3.7528 3.6074 19 1 -3.5191 -1.9020 4.6986 20 6 2.3181 -5.2734 1.4314 21 6 3.4290 -4.9321 2.1798 22 6 4.5339 -5.7628 2.1954 23 6 4.5308 -6.9308 1.4560 24 6 3.4219 -7.2695 0.7034 25 6 2.3156 -6.4406 0.6909 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 4.4322 -1.2375 0.0012 30 1 0.9003 -2.6337 -0.5900 31 1 2.5940 -3.1587 -0.4341 32 1 2.3620 -2.8269 1.9622 33 1 0.0304 -5.6679 2.7540 34 1 0.8559 -4.3100 3.5560 35 1 -2.3049 -4.6494 5.4139 36 1 3.4329 -4.0177 2.7545 37 1 5.4003 -5.4981 2.7831 38 1 5.3949 -7.5786 1.4660 39 1 3.4196 -8.1818 0.1254 40 1 1.4492 -6.7053 0.1030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130493442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = 103.471562 kcal Electronic energy + Delta-G solvation = -22258.942791 eV Core-core repulsion = 19074.908065 eV Total energy + Delta-G solvation = -3184.034727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.21196 -40.46284 -37.62398 -35.59438 -34.95269 -33.53240 -31.76799 -31.05772 -30.39281 -28.77733 -26.96830 -25.47454 -23.72181 -23.47924 -23.19358 -21.68025 -21.11871 -18.70598 -18.10942 -17.67632 -17.58938 -16.58116 -16.30686 -16.16455 -15.72098 -15.46031 -15.08757 -14.86375 -14.36723 -14.15600 -14.11000 -13.97899 -13.79537 -13.59112 -13.28761 -13.14281 -12.79292 -12.65733 -12.41197 -12.27389 -12.07683 -11.81513 -11.69279 -11.47652 -11.08739 -11.00707 -10.48942 -10.22487 -9.74596 -9.48523 -9.20904 -8.07215 -6.12469 0.52341 0.57552 0.61039 1.43620 1.45175 1.53310 1.55751 1.57152 2.48641 2.96396 3.24637 3.34477 3.51547 3.75303 3.95221 4.02230 4.07157 4.13338 4.23696 4.29501 4.35718 4.49307 4.56962 4.62772 4.70008 4.73373 4.79707 4.95130 5.03565 5.19910 5.22588 5.22961 5.51934 5.61069 5.64824 5.65699 5.68271 5.72713 5.91701 6.20262 6.26532 6.39726 6.54366 7.02312 7.50154 7.53496 9.05151 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.008311 B = 0.007806 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3368.401264 B = 3586.184083 C = 6458.295014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.273 5.273 3 N -0.120 5.120 4 N -0.306 5.306 5 C -0.054 4.054 6 C -0.001 4.001 7 C 0.137 3.863 8 N -0.670 5.670 9 C 0.150 3.850 10 H 0.080 0.920 11 C 0.050 3.950 12 C -0.491 4.491 13 H 0.070 0.930 14 C -0.008 4.008 15 N -0.943 5.943 16 Si 0.953 3.047 17 H -0.251 1.251 18 H -0.288 1.288 19 H -0.292 1.292 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.129 4.129 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.211 0.789 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.338 0.662 33 H -0.011 1.011 34 H -0.014 1.014 35 H 0.256 0.744 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.131 -0.851 -11.867 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.068 5.068 3 N -0.100 5.100 4 N -0.170 5.170 5 C -0.213 4.213 6 C -0.135 4.135 7 C 0.007 3.993 8 N -0.302 5.302 9 C 0.041 3.959 10 H 0.098 0.902 11 C 0.012 3.988 12 C -0.530 4.530 13 H 0.088 0.912 14 C -0.204 4.204 15 N -0.586 5.586 16 Si 0.779 3.221 17 H -0.175 1.175 18 H -0.214 1.214 19 H -0.218 1.218 20 C -0.116 4.116 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.147 4.147 26 H 0.109 0.891 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.227 0.773 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.159 0.841 33 H 0.007 0.993 34 H 0.004 0.996 35 H 0.065 0.935 36 H 0.132 0.868 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.401 0.974 -11.723 14.455 hybrid contribution -0.362 -1.184 0.631 1.389 sum 8.039 -0.210 -11.092 13.701 Atomic orbital electron populations 1.22549 0.70896 1.07108 1.05959 1.47413 1.10469 1.04118 1.44750 1.78196 0.96916 1.12925 1.21934 1.74982 1.10169 1.13872 1.17964 1.23811 0.98251 0.91456 1.07800 1.22363 0.90938 0.92153 1.08091 1.20366 1.01589 0.85789 0.91578 1.60573 1.40338 1.20665 1.08587 1.20455 0.91518 0.84313 0.99645 0.90160 1.18889 0.93786 0.94359 0.91717 1.21513 1.02986 1.24656 1.03811 0.91229 1.25882 1.01863 0.97087 0.95544 1.70118 1.37398 1.41827 1.09229 0.85569 0.79524 0.78521 0.78442 1.17462 1.21398 1.21824 1.20933 0.96122 0.97431 0.97156 1.21042 0.94020 1.00639 0.99358 1.21369 0.98299 0.94913 0.99412 1.21445 0.99188 0.97147 0.97141 1.21433 0.93220 0.99809 0.99482 1.21253 0.99145 0.94435 0.99876 0.89127 0.86458 0.86614 0.77277 0.88892 0.91043 0.84146 0.99304 0.99590 0.93519 0.86816 0.84360 0.83694 0.83917 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.61 11.21 127.77 1.43 3.04 16 2 N -0.27 -7.65 3.74 -355.72 -1.33 -8.98 16 3 N -0.12 -3.93 13.16 37.02 0.49 -3.44 16 4 N -0.31 -10.03 12.41 -58.25 -0.72 -10.75 16 5 C -0.05 -1.46 11.99 83.73 1.00 -0.46 16 6 C 0.00 -0.03 6.51 41.36 0.27 0.23 16 7 C 0.14 3.38 5.70 85.56 0.49 3.87 16 8 N -0.67 -21.22 5.93 -499.48 -2.96 -24.19 16 9 C 0.15 5.31 2.17 44.17 0.10 5.41 16 10 H 0.08 2.74 7.66 -2.39 -0.02 2.72 16 11 C 0.05 2.43 4.63 29.85 0.14 2.56 16 12 C -0.49 -25.54 8.84 25.60 0.23 -25.31 16 13 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 14 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 15 N -0.94 -56.55 13.29 21.45 0.28 -56.26 16 16 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 17 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 20 C -0.11 -3.57 4.71 -19.87 -0.09 -3.67 16 21 C -0.13 -3.84 9.12 22.27 0.20 -3.64 16 22 C -0.12 -2.95 10.05 22.27 0.22 -2.72 16 23 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 24 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 25 C -0.13 -3.56 9.67 22.27 0.22 -3.34 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.12 2.10 7.22 -2.39 -0.02 2.08 16 29 H 0.21 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.09 2.12 7.23 -2.39 -0.02 2.11 16 31 H 0.07 1.56 8.00 -2.39 -0.02 1.54 16 32 H 0.34 10.72 6.33 -89.70 -0.57 10.16 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 35 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.11 3.35 6.50 -2.91 -0.02 3.33 16 37 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 40 H 0.13 3.21 8.04 -2.91 -0.02 3.19 16 Total: -1.00 -69.12 341.38 3.37 -65.76 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.47 Total: 22.32 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 5.11 Total: -29.20 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.24 Total: -103.62 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.12 3.37 -65.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130493442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.227 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds