Wall clock time and date at job start Tue Mar 31 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35036 * 126.40095 * 2 1 4 4 N 1.30499 * 108.70308 * 179.82716 * 3 2 1 5 5 C 1.34123 * 109.25516 * 0.44253 * 4 3 2 6 6 C 1.34677 * 108.01977 * 359.72834 * 5 4 3 7 7 C 1.50694 * 126.59257 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47108 * 95.03699 * 7 6 5 9 9 C 1.46899 * 110.99474 * 66.04880 * 8 7 6 10 10 C 1.50704 * 109.47273 * 63.20736 * 9 8 7 11 11 H 1.07997 * 119.99967 * 356.84117 * 10 9 8 12 12 C 1.37874 * 120.00122 * 176.84951 * 10 9 8 13 13 N 1.31518 * 120.00105 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00135 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.47129 * 59.99553 * 14 12 10 16 16 H 1.48496 * 109.47458 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47152 * 299.99789 * 14 12 10 18 18 C 1.46903 * 111.00204 * 189.99771 * 8 7 6 19 19 C 1.50700 * 109.46832 * 164.14998 * 18 8 7 20 20 C 1.38667 * 120.41800 * 275.23478 * 19 18 8 21 21 C 1.38636 * 118.41699 * 179.78358 * 20 19 18 22 22 C 1.38221 * 119.16021 * 0.51886 * 21 20 19 23 23 N 1.31856 * 120.76471 * 359.72015 * 22 21 20 24 24 C 1.31883 * 121.72575 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47331 * 269.68472 * 1 2 3 26 26 H 1.09005 * 109.47557 * 149.68515 * 1 2 3 27 27 H 1.09004 * 109.47335 * 29.68909 * 1 2 3 28 28 H 1.08000 * 125.64903 * 359.97438 * 3 2 1 29 29 H 1.07994 * 125.99461 * 179.72356 * 5 4 3 30 30 H 1.08999 * 109.47515 * 215.04302 * 7 6 5 31 31 H 1.09007 * 109.47305 * 335.04415 * 7 6 5 32 32 H 1.08998 * 109.47390 * 183.20465 * 9 8 7 33 33 H 1.09005 * 109.47522 * 303.20836 * 9 8 7 34 34 H 0.96999 * 119.99730 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47224 * 284.15455 * 18 8 7 36 36 H 1.09007 * 109.46709 * 44.15351 * 18 8 7 37 37 H 1.07998 * 120.79532 * 0.02910 * 20 19 18 38 38 H 1.07997 * 120.41611 * 180.22106 * 21 20 19 39 39 H 1.07996 * 119.61912 * 179.74973 * 22 21 20 40 40 H 1.07997 * 119.61883 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0037 5 6 3.5461 -0.6505 -0.0036 6 6 2.2771 -1.1018 -0.0061 7 6 1.8362 -2.5428 -0.0145 8 7 1.5768 -2.9836 1.3627 9 6 0.4280 -2.2699 1.9362 10 6 -0.8138 -2.6029 1.1499 11 1 -0.7470 -3.2365 0.2778 12 6 -2.0350 -2.0985 1.5436 13 7 -2.1164 -1.3271 2.6057 14 14 -3.5741 -2.5106 0.5686 15 1 -3.7780 -3.9816 0.5639 16 1 -4.7480 -1.8506 1.1942 17 1 -3.4199 -2.0279 -0.8273 18 6 1.3758 -4.4376 1.4211 19 6 1.5010 -4.9050 2.8483 20 6 2.7468 -5.1881 3.3876 21 6 2.8143 -5.6108 4.7062 22 6 1.6451 -5.7455 5.4310 23 7 0.4770 -5.4721 4.8837 24 6 0.3754 -5.0629 3.6341 25 1 -0.3634 -0.0057 1.0276 26 1 -0.3634 -0.8872 -0.5187 27 1 -0.3634 0.8928 -0.5090 28 1 1.9335 2.1143 -0.0004 29 1 4.4367 -1.2612 -0.0069 30 1 0.9253 -2.6407 -0.6050 31 1 2.6208 -3.1604 -0.4518 32 1 0.2929 -2.5735 2.9743 33 1 0.6086 -1.1958 1.8923 34 1 -2.9757 -0.9726 2.8829 35 1 0.3827 -4.6825 1.0444 36 1 2.1292 -4.9334 0.8089 37 1 3.6435 -5.0780 2.7958 38 1 3.7680 -5.8366 5.1599 39 1 1.6887 -6.0782 6.4575 40 1 -0.5988 -4.8489 3.2201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132209607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:28 Heat of formation + Delta-G solvation = 109.327383 kcal Electronic energy + Delta-G solvation = -23013.842254 eV Core-core repulsion = 19830.061455 eV Total energy + Delta-G solvation = -3183.780799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.49589 -39.72837 -36.96687 -33.47976 -32.71915 -32.27093 -31.32881 -29.61892 -27.38344 -26.07526 -25.76581 -24.23052 -23.06557 -22.19033 -20.78036 -20.27593 -18.99854 -16.94460 -16.50924 -16.25103 -15.85394 -15.51780 -15.04040 -14.67845 -14.34962 -13.95829 -13.74799 -13.26991 -13.07669 -12.92588 -12.61499 -12.52305 -12.35205 -12.20309 -11.83226 -11.42336 -11.15562 -11.13180 -10.98730 -10.96040 -10.32373 -10.17075 -9.86807 -9.42706 -9.33873 -8.97727 -8.87508 -8.63616 -8.52347 -7.79704 -7.33594 -6.23511 -4.34360 1.55964 1.73898 2.67199 3.10719 3.19377 3.22026 3.51458 3.71008 4.19979 4.24639 4.88824 5.04186 5.07975 5.18306 5.20289 5.36634 5.39943 5.43473 5.52582 5.58555 5.69119 5.85094 5.95129 6.02128 6.03261 6.21344 6.26798 6.40550 6.44982 6.50867 6.62253 6.81198 7.02537 7.07837 7.20634 7.32635 7.35336 7.72212 7.80853 7.83485 8.05728 8.06766 8.44814 8.63607 8.75984 9.31459 10.79316 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.007690 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.683122 B = 3640.154597 C = 5501.864445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.439 5.439 3 C 0.160 3.840 4 N -0.505 5.505 5 C -0.036 4.036 6 C 0.011 3.989 7 C 0.132 3.868 8 N -0.532 5.532 9 C 0.178 3.822 10 C -0.555 4.555 11 H 0.057 0.943 12 C 0.073 3.927 13 N -0.880 5.880 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.098 3.902 19 C -0.108 4.108 20 C -0.063 4.063 21 C -0.185 4.185 22 C 0.083 3.917 23 N -0.490 5.490 24 C 0.122 3.878 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.195 0.805 29 H 0.160 0.840 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.266 0.734 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 -4.099 -2.625 7.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.120 5.120 3 C -0.122 4.122 4 N -0.224 5.224 5 C -0.185 4.185 6 C -0.106 4.106 7 C 0.003 3.997 8 N -0.256 5.256 9 C 0.052 3.948 10 C -0.594 4.594 11 H 0.075 0.925 12 C -0.131 4.131 13 N -0.517 5.517 14 Si 0.705 3.295 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.203 1.203 18 C -0.030 4.030 19 C -0.110 4.110 20 C -0.090 4.090 21 C -0.205 4.205 22 C -0.074 4.074 23 N -0.199 5.199 24 C -0.035 4.035 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.212 0.788 29 H 0.177 0.823 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.129 -3.439 -1.711 7.233 hybrid contribution -1.727 -0.608 -1.287 2.238 sum 4.402 -4.047 -2.997 6.688 Atomic orbital electron populations 1.22530 0.75126 1.03222 1.06596 1.45381 1.08332 1.06299 1.51963 1.24660 0.85932 0.93442 1.08169 1.70158 1.19609 1.12166 1.20428 1.21843 0.95547 0.90933 1.10201 1.21093 0.90708 0.89744 1.09098 1.20295 0.99637 0.88202 0.91531 1.62605 1.42946 1.03064 1.16960 1.20012 0.84670 0.94488 0.95624 1.21611 0.93144 1.31746 1.12880 0.92492 1.24887 0.98507 0.94908 0.94814 1.69924 1.25694 1.32396 1.23678 0.86881 0.83248 0.79093 0.80244 1.20062 1.21115 1.20268 1.20844 1.01170 0.89816 0.91183 1.20821 0.93688 0.98469 0.98050 1.21415 0.97591 0.95149 0.94808 1.22013 0.99626 1.03218 0.95593 1.22629 0.88126 0.97014 0.99659 1.67712 1.27970 1.11504 1.12707 1.22912 0.99384 0.92542 0.88700 0.87282 0.88367 0.92010 0.78846 0.82251 0.93139 0.90575 0.94705 0.94612 0.92429 0.91981 0.91781 0.85340 0.85620 0.83703 0.82236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 8.65 59.85 0.52 1.71 16 2 N -0.44 -7.98 2.76 -121.36 -0.33 -8.32 16 3 C 0.16 2.78 12.56 -90.38 -1.14 1.64 16 4 N -0.50 -9.60 11.25 -14.67 -0.17 -9.76 16 5 C -0.04 -0.66 11.79 -17.81 -0.21 -0.87 16 6 C 0.01 0.20 5.72 -81.60 -0.47 -0.27 16 7 C 0.13 2.29 5.03 -4.97 -0.03 2.26 16 8 N -0.53 -10.08 4.65 -238.95 -1.11 -11.20 16 9 C 0.18 3.98 4.31 -4.97 -0.02 3.95 16 10 C -0.55 -12.52 4.63 -34.44 -0.16 -12.68 16 11 H 0.06 1.28 5.95 -52.49 -0.31 0.97 16 12 C 0.07 1.74 4.84 -17.82 -0.09 1.65 16 13 N -0.88 -22.52 13.13 55.43 0.73 -21.80 16 14 Si 0.88 18.83 29.54 -169.99 -5.02 13.81 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 C 0.10 1.66 4.97 -4.97 -0.02 1.64 16 19 C -0.11 -1.86 4.91 -104.48 -0.51 -2.37 16 20 C -0.06 -0.95 9.88 -39.28 -0.39 -1.34 16 21 C -0.18 -2.56 10.11 -39.44 -0.40 -2.95 16 22 C 0.08 1.27 11.18 -17.55 -0.20 1.07 16 23 N -0.49 -9.11 10.36 -13.26 -0.14 -9.25 16 24 C 0.12 2.31 9.67 -17.55 -0.17 2.14 16 25 H 0.11 2.29 5.61 -51.93 -0.29 2.00 16 26 H 0.10 1.85 5.87 -51.93 -0.30 1.54 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.19 2.64 8.06 -52.49 -0.42 2.22 16 29 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 30 H 0.05 0.92 5.69 -51.93 -0.30 0.63 16 31 H 0.08 1.13 7.86 -51.92 -0.41 0.72 16 32 H 0.03 0.90 6.60 -51.93 -0.34 0.56 16 33 H 0.04 0.88 4.42 -51.93 -0.23 0.65 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.06 1.13 6.20 -51.93 -0.32 0.81 16 36 H 0.06 0.92 7.80 -51.92 -0.40 0.52 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.16 3.25 8.06 -52.49 -0.42 2.83 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -27.67 322.08 -9.47 -37.15 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.01 Total: 8.92 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -3.28 Total: -4.41 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -1.02 Total: -60.32 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.67 -9.47 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132209607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.473 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds