Wall clock time and date at job start Tue Mar 31 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47144 * 2 1 4 4 C 1.46902 * 110.99811 * 301.20321 * 3 2 1 5 5 C 1.50703 * 109.46982 * 289.04931 * 4 3 2 6 6 H 1.07999 * 119.99981 * 4.80161 * 5 4 3 7 7 C 1.37874 * 120.00153 * 184.81349 * 5 4 3 8 8 N 1.31521 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00377 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47125 * 89.99584 * 9 7 5 11 11 H 1.48496 * 109.47373 * 209.99811 * 9 7 5 12 12 H 1.48499 * 109.46903 * 329.99617 * 9 7 5 13 13 C 1.46904 * 111.00012 * 65.15568 * 3 2 1 14 14 C 1.50689 * 109.47282 * 74.62266 * 13 3 2 15 15 N 1.30528 * 126.39886 * 84.43422 * 14 13 3 16 16 N 1.28539 * 109.89962 * 180.02562 * 15 14 13 17 17 C 1.30528 * 109.89510 * 0.02562 * 16 15 14 18 18 N 1.36276 * 107.20923 * 359.97438 * 17 16 15 19 19 C 1.40272 * 127.10443 * 179.97438 * 18 17 16 20 20 C 1.38806 * 120.06676 * 124.78727 * 19 18 17 21 21 C 1.38128 * 119.93786 * 179.76694 * 20 19 18 22 22 C 1.38278 * 120.06221 * 0.48211 * 21 20 19 23 23 C 1.38272 * 120.12355 * 359.79167 * 22 21 20 24 24 C 1.38122 * 120.06983 * 359.95431 * 23 22 21 25 25 H 1.09001 * 109.47213 * 305.97741 * 1 2 3 26 26 H 1.09000 * 109.47002 * 65.98080 * 1 2 3 27 27 H 1.09006 * 109.47114 * 185.97872 * 1 2 3 28 28 H 1.08992 * 109.47355 * 239.99515 * 2 1 3 29 29 H 1.09000 * 109.47036 * 119.99546 * 2 1 3 30 30 H 1.09004 * 109.47285 * 49.04780 * 4 3 2 31 31 H 1.08994 * 109.47009 * 169.04896 * 4 3 2 32 32 H 0.96999 * 119.99698 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.46922 * 314.62078 * 13 3 2 34 34 H 1.08995 * 109.46908 * 194.62657 * 13 3 2 35 35 H 1.08006 * 126.39456 * 179.97438 * 17 16 15 36 36 H 1.08005 * 120.03183 * 359.97438 * 20 19 18 37 37 H 1.07999 * 119.97280 * 180.25307 * 21 20 19 38 38 H 1.07993 * 119.93727 * 179.76648 * 22 21 20 39 39 H 1.08007 * 119.96226 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.03067 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5253 2.1181 -1.1731 5 6 2.2138 1.6064 -2.4121 6 1 2.8871 0.7645 -2.3470 7 6 1.9843 2.2131 -3.6287 8 7 1.1640 3.2382 -3.7080 9 14 2.8382 1.5793 -5.1644 10 1 1.9956 0.5379 -5.8052 11 1 3.0458 2.7017 -6.1143 12 1 4.1521 0.9945 -4.7945 13 6 1.6519 2.0734 1.2445 14 6 2.5274 1.5818 2.3682 15 7 3.7195 2.0196 2.6696 16 7 4.1779 1.3772 3.6842 17 6 3.3028 0.4949 4.0837 18 7 2.2227 0.5963 3.2589 19 6 1.0417 -0.1585 3.3146 20 6 -0.1876 0.4794 3.4065 21 6 -1.3492 -0.2664 3.4563 22 6 -1.2876 -1.6474 3.4247 23 6 -0.0640 -2.2857 3.3389 24 6 1.1005 -1.5451 3.2835 25 1 -0.3634 0.6037 0.8316 26 1 -0.3633 0.4183 -0.9387 27 1 -0.3634 -1.0221 0.1070 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4495 1.9696 -1.2676 31 1 1.7361 3.1807 -1.0528 32 1 1.0023 3.6648 -4.5640 33 1 0.6080 1.8658 1.4797 34 1 1.7895 3.1474 1.1199 35 1 3.4140 -0.1879 4.9131 36 1 -0.2361 1.5579 3.4357 37 1 -2.3063 0.2295 3.5237 38 1 -2.1968 -2.2286 3.4676 39 1 -0.0189 -3.3646 3.3148 40 1 2.0559 -2.0442 3.2161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277876283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:07 Heat of formation + Delta-G solvation = 123.861634 kcal Electronic energy + Delta-G solvation = -22918.023113 eV Core-core repulsion = 19734.872566 eV Total energy + Delta-G solvation = -3183.150547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.03033 -39.50992 -37.35988 -34.82858 -32.69539 -31.59786 -31.11801 -29.90612 -29.34878 -27.47371 -25.14844 -23.80088 -23.25134 -23.11082 -21.66037 -20.86675 -19.48852 -18.10720 -16.64606 -16.35243 -16.22122 -15.58497 -15.07376 -14.91008 -14.66545 -14.42644 -14.27234 -13.90863 -13.81454 -13.30443 -12.74863 -12.31332 -12.14978 -11.89334 -11.72981 -11.63690 -11.25881 -11.20300 -11.04468 -10.78620 -10.67982 -10.57969 -10.22693 -10.11181 -9.86455 -9.33052 -9.29821 -9.02440 -8.93628 -8.42663 -7.32628 -6.02559 -4.02915 0.72130 0.98065 1.95953 2.46407 3.09553 3.32696 3.33818 3.39482 3.45023 4.41533 4.50036 4.50880 4.55827 4.58045 4.75559 4.95085 5.00784 5.06361 5.20341 5.34440 5.42011 5.55604 5.63914 5.64847 5.76462 5.78548 5.97922 6.00751 6.03340 6.11401 6.13236 6.26897 6.32606 6.43956 6.56642 6.76474 7.10355 7.19703 7.30112 7.76751 8.02945 8.12714 8.47928 8.93827 9.03111 9.60702 11.08217 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.005089 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.334071 B = 5500.684016 C = 6339.010983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.061 3.939 3 N -0.522 5.522 4 C 0.191 3.809 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.127 3.873 14 C 0.220 3.780 15 N -0.278 5.278 16 N -0.294 5.294 17 C 0.144 3.856 18 N -0.438 5.438 19 C 0.126 3.874 20 C -0.109 4.109 21 C -0.101 4.101 22 C -0.111 4.111 23 C -0.102 4.102 24 C -0.108 4.108 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.001 0.999 31 H 0.035 0.965 32 H 0.261 0.739 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.215 0.785 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -10.601 16.795 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.067 4.067 3 N -0.247 5.247 4 C 0.067 3.933 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.004 4.004 14 C -0.047 4.047 15 N -0.116 5.116 16 N -0.132 5.132 17 C -0.142 4.142 18 N -0.128 5.128 19 C 0.034 3.966 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.128 4.128 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.231 0.769 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.668 -9.610 16.565 19.972 hybrid contribution -1.553 -1.124 -0.738 2.054 sum -7.220 -10.734 15.827 20.441 Atomic orbital electron populations 1.22398 0.98995 1.00714 1.02380 1.21985 0.92308 0.91300 1.01126 1.62260 1.59584 1.01867 1.00964 1.19869 0.94023 0.93815 0.85632 1.21087 1.26231 1.15540 0.91205 0.92014 1.24946 0.95463 0.95005 0.99066 1.69948 1.36366 1.22129 1.25450 0.86506 0.80040 0.78302 0.82650 1.20837 1.21230 1.19769 1.20586 0.92982 0.99963 0.86836 1.25483 0.95505 0.89479 0.94213 1.74285 1.06304 1.22204 1.08851 1.74219 1.24318 1.06563 1.08096 1.26566 0.84632 1.03462 0.99537 1.44176 1.14160 1.29243 1.25261 1.17572 0.84325 0.90445 1.04234 1.21141 0.91074 1.00698 0.99893 1.21069 0.97862 0.94030 0.99003 1.21293 0.98096 0.94645 0.98863 1.21054 0.91662 1.00227 0.99158 1.21111 0.99872 0.91618 1.00193 0.93510 0.91069 0.93485 0.90055 0.93718 0.98106 0.94712 0.92932 0.93033 0.87816 0.76862 0.85219 0.84941 0.85296 0.84994 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 9.22 37.16 0.34 -2.77 16 2 C 0.06 1.16 5.76 -3.82 -0.02 1.14 16 3 N -0.52 -11.23 4.59 -237.52 -1.09 -12.32 16 4 C 0.19 4.81 4.54 -4.97 -0.02 4.79 16 5 C -0.50 -13.98 8.67 -34.44 -0.30 -14.28 16 6 H 0.06 1.74 7.27 -52.49 -0.38 1.35 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.13 2.33 5.26 -4.98 -0.03 2.30 16 14 C 0.22 3.91 6.75 -154.25 -1.04 2.87 16 15 N -0.28 -5.62 12.20 32.94 0.40 -5.22 16 16 N -0.29 -5.31 12.20 29.84 0.36 -4.94 16 17 C 0.14 1.99 12.58 -89.21 -1.12 0.87 16 18 N -0.44 -6.29 2.71 -58.96 -0.16 -6.45 16 19 C 0.13 1.47 4.66 -83.57 -0.39 1.08 16 20 C -0.11 -1.15 7.24 -39.41 -0.29 -1.43 16 21 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.11 -0.84 10.04 -39.55 -0.40 -1.24 16 23 C -0.10 -0.82 10.04 -39.61 -0.40 -1.21 16 24 C -0.11 -1.07 9.29 -39.41 -0.37 -1.44 16 25 H 0.05 0.72 4.72 -51.93 -0.25 0.47 16 26 H 0.07 1.37 6.49 -51.93 -0.34 1.04 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.70 7.14 -51.93 -0.37 1.33 16 29 H 0.04 0.79 5.65 -51.93 -0.29 0.49 16 30 H 0.00 0.03 5.87 -51.93 -0.31 -0.27 16 31 H 0.03 0.95 7.72 -51.93 -0.40 0.55 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.05 0.84 3.93 -51.93 -0.20 0.64 16 34 H 0.10 1.95 7.68 -51.93 -0.40 1.55 16 35 H 0.21 1.91 8.06 -52.48 -0.42 1.48 16 36 H 0.13 1.37 7.61 -52.48 -0.40 0.97 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -33.02 326.21 -9.38 -42.40 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.01 Total: -0.44 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -4.52 Total: -9.08 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.25 Total: -54.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.02 -9.38 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277876283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.265 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds