Wall clock time and date at job start Tue Mar 31 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47144 * 2 1 4 4 C 1.46902 * 110.99811 * 301.20321 * 3 2 1 5 5 C 1.50703 * 109.46982 * 289.04931 * 4 3 2 6 6 H 1.07999 * 119.99981 * 4.80161 * 5 4 3 7 7 C 1.37874 * 120.00153 * 184.81349 * 5 4 3 8 8 N 1.31521 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00377 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47125 * 89.99584 * 9 7 5 11 11 H 1.48496 * 109.47373 * 209.99811 * 9 7 5 12 12 H 1.48499 * 109.46903 * 329.99617 * 9 7 5 13 13 C 1.46904 * 111.00012 * 65.15568 * 3 2 1 14 14 C 1.50689 * 109.47282 * 74.62266 * 13 3 2 15 15 N 1.30528 * 126.39886 * 84.43422 * 14 13 3 16 16 N 1.28539 * 109.89962 * 180.02562 * 15 14 13 17 17 C 1.30528 * 109.89510 * 0.02562 * 16 15 14 18 18 N 1.36276 * 107.20923 * 359.97438 * 17 16 15 19 19 C 1.40272 * 127.10443 * 179.97438 * 18 17 16 20 20 C 1.38806 * 120.06676 * 124.78727 * 19 18 17 21 21 C 1.38128 * 119.93786 * 179.76694 * 20 19 18 22 22 C 1.38278 * 120.06221 * 0.48211 * 21 20 19 23 23 C 1.38272 * 120.12355 * 359.79167 * 22 21 20 24 24 C 1.38122 * 120.06983 * 359.95431 * 23 22 21 25 25 H 1.09001 * 109.47213 * 305.97741 * 1 2 3 26 26 H 1.09000 * 109.47002 * 65.98080 * 1 2 3 27 27 H 1.09006 * 109.47114 * 185.97872 * 1 2 3 28 28 H 1.08992 * 109.47355 * 239.99515 * 2 1 3 29 29 H 1.09000 * 109.47036 * 119.99546 * 2 1 3 30 30 H 1.09004 * 109.47285 * 49.04780 * 4 3 2 31 31 H 1.08994 * 109.47009 * 169.04896 * 4 3 2 32 32 H 0.96999 * 119.99698 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.46922 * 314.62078 * 13 3 2 34 34 H 1.08995 * 109.46908 * 194.62657 * 13 3 2 35 35 H 1.08006 * 126.39456 * 179.97438 * 17 16 15 36 36 H 1.08005 * 120.03183 * 359.97438 * 20 19 18 37 37 H 1.07999 * 119.97280 * 180.25307 * 21 20 19 38 38 H 1.07993 * 119.93727 * 179.76648 * 22 21 20 39 39 H 1.08007 * 119.96226 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.03067 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5253 2.1181 -1.1731 5 6 2.2138 1.6064 -2.4121 6 1 2.8871 0.7645 -2.3470 7 6 1.9843 2.2131 -3.6287 8 7 1.1640 3.2382 -3.7080 9 14 2.8382 1.5793 -5.1644 10 1 1.9956 0.5379 -5.8052 11 1 3.0458 2.7017 -6.1143 12 1 4.1521 0.9945 -4.7945 13 6 1.6519 2.0734 1.2445 14 6 2.5274 1.5818 2.3682 15 7 3.7195 2.0196 2.6696 16 7 4.1779 1.3772 3.6842 17 6 3.3028 0.4949 4.0837 18 7 2.2227 0.5963 3.2589 19 6 1.0417 -0.1585 3.3146 20 6 -0.1876 0.4794 3.4065 21 6 -1.3492 -0.2664 3.4563 22 6 -1.2876 -1.6474 3.4247 23 6 -0.0640 -2.2857 3.3389 24 6 1.1005 -1.5451 3.2835 25 1 -0.3634 0.6037 0.8316 26 1 -0.3633 0.4183 -0.9387 27 1 -0.3634 -1.0221 0.1070 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4495 1.9696 -1.2676 31 1 1.7361 3.1807 -1.0528 32 1 1.0023 3.6648 -4.5640 33 1 0.6080 1.8658 1.4797 34 1 1.7895 3.1474 1.1199 35 1 3.4140 -0.1879 4.9131 36 1 -0.2361 1.5579 3.4357 37 1 -2.3063 0.2295 3.5237 38 1 -2.1968 -2.2286 3.4676 39 1 -0.0189 -3.3646 3.3148 40 1 2.0559 -2.0442 3.2161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277876283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:06 Heat of formation + Delta-G solvation = 104.614140 kcal Electronic energy + Delta-G solvation = -22918.857747 eV Core-core repulsion = 19734.872566 eV Total energy + Delta-G solvation = -3183.985181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.24903 -40.28747 -38.98572 -35.86684 -34.78632 -32.80758 -31.98419 -31.04232 -30.66810 -29.23934 -26.76515 -25.07919 -24.74305 -23.95790 -22.70796 -22.20669 -20.92567 -19.12710 -18.37085 -17.54567 -17.33306 -16.99235 -16.59247 -16.23464 -16.00472 -15.58338 -15.46929 -15.18678 -14.78665 -14.46087 -14.07278 -13.84367 -13.47651 -13.27453 -13.09259 -12.87579 -12.78361 -12.60982 -12.49293 -12.42217 -12.33339 -11.94586 -11.76647 -11.59504 -11.39562 -11.35168 -10.59338 -10.35811 -10.00303 -9.75104 -9.03770 -8.18682 -6.26946 -0.05639 0.31779 0.82027 1.39565 1.40605 1.42305 1.53328 1.79004 2.41287 2.66027 3.12184 3.17274 3.38945 3.62415 3.82381 3.87222 3.87856 4.14828 4.20478 4.28041 4.30559 4.35986 4.41496 4.56778 4.58139 4.69535 4.70600 4.87140 4.92958 4.97985 5.03070 5.16384 5.29010 5.34155 5.35966 5.42807 5.49225 5.65150 5.76283 6.03559 6.11691 6.31081 6.52448 6.85701 7.41187 7.66487 8.91741 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.005089 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.334071 B = 5500.684016 C = 6339.010983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.067 3.933 3 N -0.541 5.541 4 C 0.208 3.792 5 C -0.518 4.518 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.135 3.865 14 C 0.207 3.793 15 N -0.324 5.324 16 N -0.337 5.337 17 C 0.170 3.830 18 N -0.428 5.428 19 C 0.095 3.905 20 C -0.123 4.123 21 C -0.102 4.102 22 C -0.102 4.102 23 C -0.098 4.098 24 C -0.113 4.113 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.062 0.938 30 H -0.007 1.007 31 H 0.003 0.997 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.263 0.737 36 H 0.121 0.879 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 -13.452 17.809 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.061 4.061 3 N -0.265 5.265 4 C 0.083 3.917 5 C -0.557 4.557 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.005 3.995 14 C -0.061 4.061 15 N -0.162 5.162 16 N -0.174 5.174 17 C -0.117 4.117 18 N -0.117 5.117 19 C 0.005 3.995 20 C -0.142 4.142 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.010 0.990 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.279 0.721 36 H 0.139 0.861 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.177 0.823 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.086 -12.484 17.601 22.713 hybrid contribution -1.199 -0.334 -0.912 1.543 sum -8.285 -12.817 16.690 22.616 Atomic orbital electron populations 1.22227 0.96997 1.02452 1.01255 1.21922 0.93899 0.89573 1.00709 1.62067 1.60460 1.02965 1.01009 1.19471 0.93226 0.92317 0.86697 1.21362 1.26274 1.15451 0.92604 0.92822 1.25771 0.96055 0.95139 1.02164 1.70057 1.37524 1.23162 1.26354 0.85477 0.78916 0.78002 0.78794 1.19482 1.20722 1.19725 1.20424 0.94376 0.98855 0.85858 1.25069 0.95062 0.91077 0.94898 1.74176 1.07731 1.23953 1.10342 1.74120 1.26150 1.08462 1.08636 1.27433 0.83216 1.01934 0.99104 1.44200 1.15103 1.28300 1.24058 1.17847 0.83488 0.91098 1.07108 1.21219 0.91587 1.00608 1.00832 1.21367 0.97860 0.94680 0.98148 1.21706 0.99209 0.94387 0.96695 1.21416 0.90978 1.01561 0.97708 1.21268 1.01061 0.90737 1.00193 0.92163 0.94035 0.90676 0.92406 0.92005 0.98969 0.97839 0.92682 0.90873 0.89448 0.72125 0.86143 0.82955 0.82306 0.82255 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 9.22 71.98 0.66 -4.84 16 2 C 0.07 2.53 5.76 86.30 0.50 3.03 16 3 N -0.54 -23.95 4.59 -905.38 -4.16 -28.11 16 4 C 0.21 10.96 4.54 85.56 0.39 11.35 16 5 C -0.52 -29.70 8.67 25.60 0.22 -29.48 16 6 H 0.05 3.09 7.27 -2.91 -0.02 3.07 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.14 5.12 5.26 85.55 0.45 5.57 16 14 C 0.21 7.50 6.75 137.71 0.93 8.43 16 15 N -0.32 -13.48 12.20 -49.70 -0.61 -14.09 16 16 N -0.34 -12.19 12.20 -59.50 -0.73 -12.92 16 17 C 0.17 4.45 12.58 179.86 2.26 6.71 16 18 N -0.43 -11.85 2.71 -340.45 -0.92 -12.77 16 19 C 0.09 2.02 4.66 38.06 0.18 2.20 16 20 C -0.12 -2.36 7.24 22.38 0.16 -2.20 16 21 C -0.10 -1.38 10.04 22.25 0.22 -1.15 16 22 C -0.10 -1.07 10.04 22.29 0.22 -0.85 16 23 C -0.10 -1.13 10.04 22.25 0.22 -0.91 16 24 C -0.11 -1.87 9.29 22.38 0.21 -1.67 16 25 H 0.06 1.76 4.72 -2.39 -0.01 1.75 16 26 H 0.04 1.59 6.49 -2.39 -0.02 1.58 16 27 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.06 2.44 7.14 -2.39 -0.02 2.42 16 29 H 0.06 2.12 5.65 -2.39 -0.01 2.10 16 30 H -0.01 -0.39 5.87 -2.39 -0.01 -0.40 16 31 H 0.00 0.20 7.72 -2.39 -0.02 0.18 16 32 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.07 2.40 3.93 -2.38 -0.01 2.39 16 34 H 0.09 3.52 7.68 -2.39 -0.02 3.51 16 35 H 0.26 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.12 2.46 7.61 -2.91 -0.02 2.44 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -74.54 326.21 4.05 -70.49 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.05 Total: 8.63 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 7.09 Total: -2.95 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -6.13 Total: -123.21 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -74.54 4.05 -70.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277876283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.108 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds