Wall clock time and date at job start Tue Mar 31 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47374 * 2 1 4 4 C 1.46894 * 111.00389 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47543 * 184.74288 * 4 3 2 6 6 C 1.35068 * 126.07193 * 105.39290 * 5 4 3 7 7 N 1.35052 * 107.98783 * 179.97438 * 6 5 4 8 8 C 1.46502 * 125.93269 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47074 * 125.04593 * 8 7 6 10 10 H 1.07997 * 120.00160 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99694 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99916 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00087 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47081 * 89.99972 * 13 11 9 15 15 H 1.48508 * 109.46907 * 209.99673 * 13 11 9 16 16 H 1.48494 * 109.47246 * 329.99605 * 13 11 9 17 17 N 1.40075 * 108.13791 * 0.02562 * 7 6 5 18 18 C 1.31645 * 108.10402 * 359.97438 * 17 7 6 19 19 C 1.48371 * 126.03837 * 179.97438 * 18 17 7 20 20 C 1.39776 * 120.90000 * 137.17207 * 19 18 17 21 21 C 1.37963 * 119.01661 * 179.75510 * 20 19 18 22 22 N 1.31934 * 120.88089 * 0.52947 * 21 20 19 23 23 C 1.31933 * 122.00286 * 359.74341 * 22 21 20 24 24 C 1.37956 * 120.88502 * 359.97256 * 23 22 21 25 25 H 1.09000 * 109.46802 * 299.99921 * 1 2 3 26 26 H 1.09004 * 109.47237 * 59.99439 * 1 2 3 27 27 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46802 * 240.00079 * 2 1 3 29 29 H 1.08994 * 109.47007 * 119.99837 * 2 1 3 30 30 H 1.00897 * 110.99941 * 56.04277 * 3 2 1 31 31 H 1.09002 * 109.46885 * 64.74733 * 4 3 2 32 32 H 1.08999 * 109.47556 * 304.74877 * 4 3 2 33 33 H 1.07998 * 126.00600 * 359.96596 * 6 5 4 34 34 H 1.09006 * 109.46915 * 245.05087 * 8 7 6 35 35 H 1.09003 * 109.46786 * 5.04617 * 8 7 6 36 36 H 0.97002 * 119.99914 * 180.02562 * 12 11 9 37 37 H 1.07996 * 120.49089 * 0.02562 * 20 19 18 38 38 H 1.08002 * 119.55633 * 180.27081 * 21 20 19 39 39 H 1.08007 * 119.55525 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.49298 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 6 3.9525 2.8530 0.1181 6 6 4.4752 3.4313 1.2212 7 7 4.7647 4.7158 0.9213 8 6 5.3486 5.7013 1.8346 9 6 6.5956 6.2807 1.2181 10 1 6.9205 5.9484 0.2432 11 6 7.3211 7.2357 1.8981 12 7 8.4092 7.7418 1.3598 13 14 6.7587 7.8109 3.5841 14 1 7.3748 6.9555 4.6299 15 1 7.1748 9.2216 3.7900 16 1 5.2797 7.7131 3.6725 17 7 4.4088 4.9427 -0.4144 18 6 3.9189 3.8228 -0.9031 19 6 3.4188 3.6185 -2.2849 20 6 3.7351 2.4590 -2.9987 21 6 3.2450 2.3069 -4.2793 22 7 2.4969 3.2417 -4.8335 23 6 2.1800 4.3527 -4.1964 24 6 2.6234 4.5826 -2.9104 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6442 1.9013 0.7813 31 1 3.8634 0.9955 -0.9286 32 1 3.8667 0.8485 0.8452 33 1 4.6335 2.9508 2.1754 34 1 4.6286 6.4993 2.0167 35 1 5.6009 5.2174 2.7782 36 1 8.9198 8.4134 1.8385 37 1 4.3504 1.6917 -2.5526 38 1 3.4804 1.4125 -4.8371 39 1 1.5652 5.0921 -4.6882 40 1 2.3599 5.4941 -2.3946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278703934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:43 Heat of formation + Delta-G solvation = 109.765344 kcal Electronic energy + Delta-G solvation = -21795.019030 eV Core-core repulsion = 18611.257222 eV Total energy + Delta-G solvation = -3183.761808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84403 -39.52897 -36.54531 -34.16725 -32.84297 -31.85288 -31.09016 -30.81373 -29.06362 -27.57985 -24.47303 -24.11155 -23.13841 -22.09150 -21.82485 -20.12016 -19.49574 -17.16857 -16.77660 -16.03404 -15.81960 -15.45133 -15.41326 -15.05532 -14.51203 -14.13710 -14.01708 -13.71961 -13.54358 -13.26559 -13.20252 -12.67724 -12.44665 -12.34244 -12.06370 -11.81836 -11.70213 -11.33556 -11.20717 -11.10005 -10.79609 -10.39303 -10.15433 -9.83109 -9.48282 -9.32195 -8.94246 -8.84359 -8.54884 -8.36735 -7.82245 -6.30659 -4.34272 1.29420 1.37908 2.49874 3.06515 3.10494 3.15262 3.15524 3.28395 4.10822 4.15638 4.35074 4.62241 4.71186 4.94934 4.97252 5.03123 5.08059 5.19994 5.28041 5.35828 5.38094 5.42472 5.49439 5.64572 5.71371 5.85229 5.88476 5.92059 6.03812 6.05004 6.12629 6.31303 6.37574 6.48190 6.67705 6.88245 6.99026 7.08383 7.23193 7.41634 7.60560 8.15105 8.21538 8.32676 8.78168 9.23219 10.81888 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.004482 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.590986 B = 6245.279789 C = 7522.832220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.684 5.684 4 C 0.143 3.857 5 C -0.243 4.243 6 C 0.055 3.945 7 N -0.318 5.318 8 C 0.229 3.771 9 C -0.538 4.538 10 H 0.086 0.914 11 C 0.078 3.922 12 N -0.884 5.884 13 Si 0.873 3.127 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.264 1.264 17 N -0.251 5.251 18 C 0.087 3.913 19 C 0.068 3.932 20 C -0.148 4.148 21 C 0.094 3.906 22 N -0.493 5.493 23 C 0.095 3.905 24 C -0.150 4.150 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.340 0.660 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.167 0.833 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.269 0.731 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 -13.876 -2.178 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 N -0.315 5.315 4 C 0.014 3.986 5 C -0.255 4.255 6 C -0.095 4.095 7 N -0.097 5.097 8 C 0.111 3.889 9 C -0.576 4.576 10 H 0.104 0.896 11 C -0.126 4.126 12 N -0.521 5.521 13 Si 0.699 3.301 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.189 1.189 17 N -0.074 5.074 18 C -0.076 4.076 19 C 0.058 3.942 20 C -0.169 4.169 21 C -0.062 4.062 22 N -0.203 5.203 23 C -0.061 4.061 24 C -0.171 4.171 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.158 0.842 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.184 0.816 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.959 -12.428 -3.771 18.347 hybrid contribution 0.345 -0.476 3.105 3.160 sum -12.614 -12.905 -0.666 18.058 Atomic orbital electron populations 1.21754 0.95260 1.01327 1.02373 1.21897 0.95481 0.90007 1.00136 1.60565 1.08085 1.12639 1.50261 1.20101 0.86820 0.91375 1.00347 1.19625 1.15064 0.97181 0.93659 1.22255 1.00848 0.86585 0.99803 1.48969 1.43721 1.08721 1.08297 1.20104 0.95186 0.86683 0.86951 1.21065 1.06391 1.23568 1.06620 0.89600 1.24822 0.94547 0.95355 0.97873 1.69868 1.15759 1.28164 1.38320 0.86914 0.79631 0.79158 0.84433 1.19695 1.20392 1.18912 1.77752 1.17419 1.20977 0.91298 1.20291 1.01899 0.92146 0.93306 1.18037 0.93286 0.93283 0.89597 1.22065 1.01319 0.97919 0.95589 1.22525 0.93804 0.97459 0.92435 1.67577 1.12992 1.02123 1.37600 1.22568 0.97423 0.94484 0.91656 1.22207 0.98530 0.99946 0.96386 0.93000 0.91873 0.92507 0.91226 0.95754 0.84241 0.90665 0.95062 0.81623 0.93802 0.93416 0.92056 0.84938 0.83057 0.82970 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.17 37.16 0.38 -0.89 16 2 C 0.05 0.51 6.40 -3.82 -0.02 0.48 16 3 N -0.68 -7.95 6.52 -115.06 -0.75 -8.70 16 4 C 0.14 1.78 5.70 -4.98 -0.03 1.75 16 5 C -0.24 -3.90 5.56 -104.76 -0.58 -4.48 16 6 C 0.05 0.93 11.32 -17.26 -0.20 0.74 16 7 N -0.32 -6.73 3.67 -62.58 -0.23 -6.96 16 8 C 0.23 5.21 5.33 -5.19 -0.03 5.18 16 9 C -0.54 -14.84 9.79 -34.44 -0.34 -15.18 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 11 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 12 N -0.88 -26.15 13.96 55.43 0.77 -25.38 16 13 Si 0.87 19.65 27.47 -169.99 -4.67 14.99 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 17 N -0.25 -5.52 12.44 33.42 0.42 -5.11 16 18 C 0.09 1.61 6.72 -82.78 -0.56 1.06 16 19 C 0.07 1.11 5.77 -104.58 -0.60 0.51 16 20 C -0.15 -2.06 9.02 -39.11 -0.35 -2.41 16 21 C 0.09 1.22 11.17 -17.61 -0.20 1.03 16 22 N -0.49 -7.08 10.35 -13.35 -0.14 -7.22 16 23 C 0.10 1.30 11.17 -17.61 -0.20 1.11 16 24 C -0.15 -2.29 9.89 -39.11 -0.39 -2.67 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.34 3.96 8.66 -39.29 -0.34 3.62 16 31 H 0.08 0.91 5.82 -51.93 -0.30 0.61 16 32 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 35 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.13 1.64 6.29 -52.49 -0.33 1.31 16 38 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.15 1.64 8.06 -52.48 -0.42 1.21 16 40 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -31.58 341.52 -8.21 -39.79 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.55 Total: 5.16 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.21 Total: -11.72 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.07 Total: -53.37 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.58 -8.21 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278703934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.557 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds