Wall clock time and date at job start Tue Mar 31 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46665 * 2 1 4 4 N 1.46896 * 109.47354 * 120.00474 * 2 1 3 5 5 C 1.46901 * 110.99879 * 274.99799 * 4 2 1 6 6 C 1.52996 * 109.47331 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47243 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99643 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00316 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99513 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46863 * 90.00639 * 11 9 7 13 13 H 1.48505 * 109.46740 * 210.00111 * 11 9 7 14 14 H 1.48494 * 109.47319 * 330.00141 * 11 9 7 15 15 C 1.50701 * 109.47106 * 240.00457 * 2 1 3 16 16 C 1.38298 * 119.96987 * 279.99759 * 15 2 1 17 17 C 1.38246 * 120.13471 * 179.97438 * 16 15 2 18 18 C 1.38145 * 120.06654 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.93394 * 359.97438 * 18 17 16 20 20 N 1.40241 * 120.06817 * 180.02562 * 19 18 17 21 21 C 1.36120 * 125.94338 * 4.99665 * 20 19 18 22 22 C 1.35364 * 106.05348 * 180.02562 * 21 20 19 23 23 N 1.33774 * 106.53911 * 0.02562 * 22 21 20 24 24 N 1.28610 * 109.05763 * 359.73913 * 23 22 21 25 25 C 1.38108 * 119.96623 * 99.97447 * 15 2 1 26 26 H 1.09003 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47295 * 299.99504 * 1 2 3 28 28 H 1.09001 * 109.47398 * 59.99666 * 1 2 3 29 29 H 1.00893 * 111.00292 * 38.95146 * 4 2 1 30 30 H 1.08996 * 109.47378 * 300.00058 * 5 4 2 31 31 H 1.09003 * 109.47315 * 59.99921 * 5 4 2 32 32 H 1.09003 * 109.47235 * 300.00156 * 6 5 4 33 33 H 1.08997 * 109.47043 * 60.00162 * 6 5 4 34 34 H 0.96999 * 119.99856 * 180.02562 * 10 9 7 35 35 H 1.07999 * 119.93090 * 359.95727 * 16 15 2 36 36 H 1.08000 * 119.97172 * 179.97438 * 17 16 15 37 37 H 1.07998 * 120.03759 * 179.70663 * 18 17 16 38 38 H 1.08001 * 126.97128 * 359.97438 * 21 20 19 39 39 H 1.07998 * 126.73245 * 179.97438 * 22 21 20 40 40 H 1.07992 * 120.03194 * 0.04518 * 25 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5963 -0.5330 3.5740 7 6 2.6602 0.4056 4.7514 8 1 2.3635 1.4376 4.6359 9 6 3.0964 -0.0536 5.9761 10 7 3.4571 -1.3104 6.1168 11 14 3.1762 1.1101 7.4353 12 1 1.8824 1.0801 8.1636 13 1 4.2679 0.6852 8.3480 14 1 3.4418 2.4896 6.9544 15 6 2.0323 -0.7103 -1.2305 16 6 2.0665 -2.0924 -1.2648 17 6 2.5262 -2.7476 -2.3921 18 6 2.9534 -2.0229 -3.4879 19 6 2.9203 -0.6356 -3.4565 20 7 3.3528 0.1029 -4.5675 21 6 3.7363 -0.4108 -5.7682 22 6 4.0721 0.6499 -6.5392 23 7 3.8827 1.7412 -5.7889 24 7 3.4523 1.3848 -4.6305 25 6 2.4576 0.0196 -2.3231 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.4496 -1.4979 1.4099 30 1 2.7589 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 1.9203 -1.3569 3.8029 33 1 3.5918 -0.9263 3.3681 34 1 3.7636 -1.6334 6.9785 35 1 1.7337 -2.6611 -0.4091 36 1 2.5521 -3.8270 -2.4159 37 1 3.3168 -2.5351 -4.3665 38 1 3.7673 -1.4533 -6.0486 39 1 4.4247 0.6210 -7.5596 40 1 2.4310 1.0989 -2.2956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287802964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:55 Heat of formation + Delta-G solvation = 122.827546 kcal Electronic energy + Delta-G solvation = -21170.730496 eV Core-core repulsion = 17987.535108 eV Total energy + Delta-G solvation = -3183.195388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.63890 -39.86110 -36.95835 -34.69363 -33.40150 -32.02677 -31.33137 -30.33428 -29.41535 -27.86842 -24.63545 -24.57193 -23.68673 -22.49935 -21.65903 -20.59823 -20.46068 -18.33734 -16.69397 -16.56619 -16.35712 -15.69184 -15.59165 -14.95888 -14.67232 -14.42906 -14.23236 -14.04179 -13.77153 -13.40138 -12.69489 -12.64643 -12.36413 -12.19597 -12.12527 -11.73965 -11.51944 -11.23689 -11.15988 -11.06035 -10.97939 -10.89510 -10.55039 -10.08802 -9.73918 -9.47111 -9.21287 -9.08220 -8.73369 -8.38478 -7.93832 -6.02701 -4.05305 0.42168 1.04671 1.79021 2.02368 2.29683 3.30422 3.36940 3.40376 3.46550 4.08113 4.18895 4.41911 4.53295 4.63869 4.72852 4.81251 4.89951 4.97683 5.03638 5.11189 5.28588 5.33595 5.34759 5.41769 5.62700 5.72691 5.79304 5.83443 6.03355 6.07720 6.13595 6.25547 6.29244 6.39035 6.45089 6.70473 6.92003 7.37381 7.66410 7.75062 7.87417 8.03339 8.20152 8.39610 9.01853 9.58806 11.08715 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.002768 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.352644 B =10111.737751 C =10471.967134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.116 3.884 3 H 0.088 0.912 4 N -0.683 5.683 5 C 0.066 3.934 6 C 0.026 3.974 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.037 4.037 16 C -0.084 4.084 17 C -0.100 4.100 18 C -0.125 4.125 19 C 0.111 3.889 20 N -0.235 5.235 21 C -0.051 4.051 22 C -0.048 4.048 23 N -0.268 5.268 24 N -0.077 5.077 25 C -0.096 4.096 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.337 0.663 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -4.038 -23.409 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.005 3.995 3 H 0.106 0.894 4 N -0.313 5.313 5 C -0.062 4.062 6 C -0.012 4.012 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.038 4.038 16 C -0.103 4.103 17 C -0.118 4.118 18 C -0.145 4.145 19 C 0.020 3.980 20 N -0.022 5.022 21 C -0.200 4.200 22 C -0.204 4.204 23 N -0.134 5.134 24 N -0.056 5.056 25 C -0.117 4.117 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.210 0.790 39 H 0.211 0.789 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.049 -2.690 -22.718 23.079 hybrid contribution -0.637 -0.488 0.450 0.920 sum -3.686 -3.179 -22.268 22.794 Atomic orbital electron populations 1.22484 0.96153 1.02399 1.02520 1.20496 0.92689 0.97711 0.88598 0.89359 1.60698 1.56237 1.10294 1.04073 1.22212 0.98438 0.95240 0.90288 1.19063 0.97014 0.95288 0.89803 1.21166 1.44009 0.96432 0.94486 0.92735 1.24997 0.95325 0.95116 0.98895 1.69965 1.44420 1.14411 1.24460 0.86589 0.77668 0.81221 0.82499 1.20693 1.21177 1.19851 1.19865 0.96086 0.93732 0.94138 1.21220 0.97239 0.94054 0.97745 1.21015 0.98242 1.00269 0.92318 1.20797 1.02730 0.90570 1.00439 1.17581 1.03981 0.90315 0.86083 1.44797 1.41156 1.06025 1.10245 1.23827 1.07588 1.02545 0.86003 1.23648 1.06368 0.88175 1.02198 1.75137 1.14167 1.26229 0.97866 1.78405 1.18151 0.92731 1.16303 1.20813 0.98603 1.01143 0.91102 0.92243 0.91625 0.92290 0.84440 0.92195 0.96285 0.96818 0.95635 0.92970 0.84688 0.84606 0.85180 0.79043 0.78928 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.14 37.16 0.34 -1.68 16 2 C 0.12 1.53 2.79 -68.87 -0.19 1.34 16 3 H 0.09 1.23 7.66 -51.93 -0.40 0.83 16 4 N -0.68 -11.09 5.70 -107.96 -0.62 -11.70 16 5 C 0.07 1.32 5.42 -3.83 -0.02 1.30 16 6 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 11 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C -0.04 -0.45 4.95 -104.65 -0.52 -0.96 16 16 C -0.08 -0.90 9.32 -39.56 -0.37 -1.27 16 17 C -0.10 -0.88 10.04 -39.61 -0.40 -1.27 16 18 C -0.12 -1.10 9.46 -39.41 -0.37 -1.47 16 19 C 0.11 1.26 6.67 -83.57 -0.56 0.70 16 20 N -0.23 -2.78 3.56 -10.47 -0.04 -2.81 16 21 C -0.05 -0.44 10.91 -16.67 -0.18 -0.63 16 22 C -0.05 -0.45 12.05 -17.73 -0.21 -0.66 16 23 N -0.27 -3.62 12.39 30.24 0.37 -3.24 16 24 N -0.08 -1.10 12.42 60.35 0.75 -0.35 16 25 C -0.10 -1.18 9.24 -39.40 -0.36 -1.54 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 27 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.34 5.13 7.82 -39.30 -0.31 4.83 16 30 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 31 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.14 1.37 7.24 -52.49 -0.38 0.99 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.76 6.79 -52.49 -0.36 0.40 16 38 H 0.19 0.82 7.13 -52.49 -0.37 0.45 16 39 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 1.75 7.68 -52.49 -0.40 1.35 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -32.88 340.01 -7.58 -40.47 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.49 Total: 0.94 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -3.40 Total: -19.02 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 1.21 Total: -44.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.88 -7.58 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287802964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.293 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds