Wall clock time and date at job start Tue Mar 31 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46665 * 2 1 4 4 N 1.46896 * 109.47354 * 120.00474 * 2 1 3 5 5 C 1.46901 * 110.99879 * 274.99799 * 4 2 1 6 6 C 1.52996 * 109.47331 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47243 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99643 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00316 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99513 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46863 * 90.00639 * 11 9 7 13 13 H 1.48505 * 109.46740 * 210.00111 * 11 9 7 14 14 H 1.48494 * 109.47319 * 330.00141 * 11 9 7 15 15 C 1.50701 * 109.47106 * 240.00457 * 2 1 3 16 16 C 1.38298 * 119.96987 * 279.99759 * 15 2 1 17 17 C 1.38246 * 120.13471 * 179.97438 * 16 15 2 18 18 C 1.38145 * 120.06654 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.93394 * 359.97438 * 18 17 16 20 20 N 1.40241 * 120.06817 * 180.02562 * 19 18 17 21 21 C 1.36120 * 125.94338 * 4.99665 * 20 19 18 22 22 C 1.35364 * 106.05348 * 180.02562 * 21 20 19 23 23 N 1.33774 * 106.53911 * 0.02562 * 22 21 20 24 24 N 1.28610 * 109.05763 * 359.73913 * 23 22 21 25 25 C 1.38108 * 119.96623 * 99.97447 * 15 2 1 26 26 H 1.09003 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47295 * 299.99504 * 1 2 3 28 28 H 1.09001 * 109.47398 * 59.99666 * 1 2 3 29 29 H 1.00893 * 111.00292 * 38.95146 * 4 2 1 30 30 H 1.08996 * 109.47378 * 300.00058 * 5 4 2 31 31 H 1.09003 * 109.47315 * 59.99921 * 5 4 2 32 32 H 1.09003 * 109.47235 * 300.00156 * 6 5 4 33 33 H 1.08997 * 109.47043 * 60.00162 * 6 5 4 34 34 H 0.96999 * 119.99856 * 180.02562 * 10 9 7 35 35 H 1.07999 * 119.93090 * 359.95727 * 16 15 2 36 36 H 1.08000 * 119.97172 * 179.97438 * 17 16 15 37 37 H 1.07998 * 120.03759 * 179.70663 * 18 17 16 38 38 H 1.08001 * 126.97128 * 359.97438 * 21 20 19 39 39 H 1.07998 * 126.73245 * 179.97438 * 22 21 20 40 40 H 1.07992 * 120.03194 * 0.04518 * 25 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5963 -0.5330 3.5740 7 6 2.6602 0.4056 4.7514 8 1 2.3635 1.4376 4.6359 9 6 3.0964 -0.0536 5.9761 10 7 3.4571 -1.3104 6.1168 11 14 3.1762 1.1101 7.4353 12 1 1.8824 1.0801 8.1636 13 1 4.2679 0.6852 8.3480 14 1 3.4418 2.4896 6.9544 15 6 2.0323 -0.7103 -1.2305 16 6 2.0665 -2.0924 -1.2648 17 6 2.5262 -2.7476 -2.3921 18 6 2.9534 -2.0229 -3.4879 19 6 2.9203 -0.6356 -3.4565 20 7 3.3528 0.1029 -4.5675 21 6 3.7363 -0.4108 -5.7682 22 6 4.0721 0.6499 -6.5392 23 7 3.8827 1.7412 -5.7889 24 7 3.4523 1.3848 -4.6305 25 6 2.4576 0.0196 -2.3231 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.4496 -1.4979 1.4099 30 1 2.7589 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 1.9203 -1.3569 3.8029 33 1 3.5918 -0.9263 3.3681 34 1 3.7636 -1.6334 6.9785 35 1 1.7337 -2.6611 -0.4091 36 1 2.5521 -3.8270 -2.4159 37 1 3.3168 -2.5351 -4.3665 38 1 3.7673 -1.4533 -6.0486 39 1 4.4247 0.6210 -7.5596 40 1 2.4310 1.0989 -2.2956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287802964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:55 Heat of formation + Delta-G solvation = 101.711594 kcal Electronic energy + Delta-G solvation = -21171.646153 eV Core-core repulsion = 17987.535108 eV Total energy + Delta-G solvation = -3184.111045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.43143 -40.71399 -38.15879 -35.80697 -35.08209 -33.35587 -32.26579 -31.30649 -30.47316 -29.32291 -26.20869 -25.42540 -24.82205 -23.43519 -22.70838 -22.14947 -21.36403 -19.19567 -18.48106 -17.51484 -17.33865 -16.76031 -16.59622 -16.31539 -16.00188 -15.66693 -15.22884 -15.03502 -14.64598 -14.37510 -14.24163 -14.12936 -13.64050 -13.32420 -13.02005 -12.98929 -12.86282 -12.63896 -12.53645 -12.34097 -12.05733 -12.01445 -11.90683 -11.85709 -11.39805 -11.24702 -10.56653 -10.48563 -9.94180 -9.56162 -9.29399 -8.20980 -6.31778 -0.36602 0.25617 1.02280 1.28405 1.39832 1.41123 1.52176 1.53295 2.39786 2.65681 3.12765 3.21196 3.45181 3.62553 3.79309 3.95071 4.04846 4.11187 4.20746 4.23850 4.30167 4.34735 4.49504 4.50929 4.62322 4.69778 4.76285 4.87754 4.95245 5.06467 5.11653 5.17064 5.31736 5.36026 5.41759 5.49036 5.60586 5.69103 5.79500 5.93244 6.12980 6.25666 6.54029 6.85500 7.37385 7.39095 8.91025 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.002768 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.352644 B =10111.737751 C =10471.967134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 H 0.074 0.926 4 N -0.685 5.685 5 C 0.085 3.915 6 C 0.034 3.966 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.930 5.930 11 Si 0.964 3.036 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.266 1.266 15 C -0.050 4.050 16 C -0.094 4.094 17 C -0.091 4.091 18 C -0.110 4.110 19 C 0.096 3.904 20 N -0.242 5.242 21 C -0.037 4.037 22 C -0.054 4.054 23 N -0.305 5.305 24 N -0.130 5.130 25 C -0.114 4.114 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.344 0.656 30 H 0.051 0.949 31 H 0.025 0.975 32 H -0.004 1.004 33 H -0.006 1.006 34 H 0.264 0.736 35 H 0.138 0.862 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.241 0.759 39 H 0.230 0.770 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 -5.476 -25.020 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.093 0.907 4 N -0.316 5.316 5 C -0.043 4.043 6 C -0.004 4.004 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.570 5.570 11 Si 0.788 3.212 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.190 1.190 15 C -0.052 4.052 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.131 4.131 19 C 0.006 3.994 20 N -0.029 5.029 21 C -0.185 4.185 22 C -0.210 4.210 23 N -0.170 5.170 24 N -0.107 5.107 25 C -0.134 4.134 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.163 0.837 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.257 0.743 39 H 0.247 0.753 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.223 -4.105 -24.339 24.892 hybrid contribution -0.558 -0.137 0.823 1.003 sum -3.781 -4.242 -23.516 24.192 Atomic orbital electron populations 1.22395 0.94608 1.03212 1.02556 1.20457 0.93962 0.96915 0.87855 0.90740 1.60559 1.57356 1.10050 1.03650 1.21781 0.98094 0.94763 0.89691 1.18898 0.94972 0.94842 0.91683 1.21617 1.44000 0.97044 0.95683 0.92352 1.25931 0.94781 0.96814 1.02072 1.70091 1.45212 1.16321 1.25392 0.85468 0.78030 0.79080 0.78592 1.19597 1.20730 1.19001 1.19679 0.97570 0.94474 0.93454 1.21393 0.97592 0.93372 0.98920 1.21409 0.96464 1.01923 0.91161 1.21238 1.00905 0.89263 1.01664 1.17830 1.04382 0.91408 0.85804 1.44958 1.41053 1.05672 1.11238 1.24674 1.05019 1.04530 0.84259 1.24388 1.05781 0.87282 1.03558 1.75072 1.15050 1.28388 0.98463 1.78389 1.20809 0.94349 1.17192 1.20736 0.99948 1.00552 0.92210 0.91022 0.92622 0.91121 0.83702 0.93011 0.95724 0.98569 0.98799 0.92727 0.84402 0.81165 0.81232 0.74268 0.75349 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 9.14 71.98 0.66 -3.18 16 2 C 0.12 3.20 2.79 44.17 0.12 3.32 16 3 H 0.07 2.19 7.66 -2.39 -0.02 2.18 16 4 N -0.69 -22.71 5.70 -495.47 -2.83 -25.54 16 5 C 0.09 3.51 5.42 86.30 0.47 3.98 16 6 C 0.03 1.76 5.23 29.85 0.16 1.92 16 7 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.00 0.12 5.46 84.66 0.46 0.58 16 10 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 11 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 C -0.05 -1.22 4.95 -19.88 -0.10 -1.32 16 16 C -0.09 -1.87 9.32 22.29 0.21 -1.66 16 17 C -0.09 -1.29 10.04 22.25 0.22 -1.06 16 18 C -0.11 -1.54 9.46 22.38 0.21 -1.33 16 19 C 0.10 2.05 6.67 38.08 0.25 2.30 16 20 N -0.24 -5.43 3.56 -187.04 -0.67 -6.10 16 21 C -0.04 -0.52 10.91 83.36 0.91 0.39 16 22 C -0.05 -0.89 12.05 83.73 1.01 0.12 16 23 N -0.30 -8.24 12.39 -58.25 -0.72 -8.97 16 24 N -0.13 -3.79 12.42 37.02 0.46 -3.33 16 25 C -0.11 -2.85 9.24 22.38 0.21 -2.64 16 26 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 27 H 0.05 1.36 7.45 -2.39 -0.02 1.35 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.34 10.57 7.82 -89.70 -0.70 9.87 16 30 H 0.05 2.19 8.05 -2.39 -0.02 2.17 16 31 H 0.02 0.98 7.44 -2.39 -0.02 0.96 16 32 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.14 2.61 7.24 -2.91 -0.02 2.59 16 36 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.17 0.96 6.79 -2.91 -0.02 0.94 16 38 H 0.24 0.67 7.13 -2.91 -0.02 0.65 16 39 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.12 3.37 7.68 -2.91 -0.02 3.34 16 Total: -1.00 -74.82 340.01 3.93 -70.89 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.35 Total: 12.26 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 5.02 Total: -29.40 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.47 Total: -100.11 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.82 3.93 -70.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287802964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.599 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds