Wall clock time and date at job start Tue Mar 31 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99979 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47309 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47510 * 119.99847 * 11 9 7 14 14 H 1.48506 * 109.47246 * 239.99882 * 11 9 7 15 15 C 1.50708 * 109.47150 * 119.99765 * 2 1 3 16 16 C 1.38294 * 119.96558 * 80.00337 * 15 2 1 17 17 C 1.38259 * 120.13179 * 180.02562 * 16 15 2 18 18 C 1.38145 * 120.06291 * 359.94904 * 17 16 15 19 19 C 1.38811 * 119.93427 * 0.02853 * 18 17 16 20 20 N 1.40247 * 120.06560 * 179.97438 * 19 18 17 21 21 C 1.36120 * 125.94059 * 4.70952 * 20 19 18 22 22 C 1.35369 * 106.04734 * 179.88296 * 21 20 19 23 23 N 1.33776 * 106.53605 * 0.37655 * 22 21 20 24 24 N 1.28598 * 109.06466 * 359.75572 * 23 22 21 25 25 C 1.38100 * 119.96456 * 259.72850 * 15 2 1 26 26 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 28 28 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 29 29 H 1.00897 * 110.99542 * 321.04983 * 4 2 1 30 30 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 31 31 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 32 32 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 33 33 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 34 34 H 0.96996 * 120.00505 * 179.97438 * 10 9 7 35 35 H 1.08002 * 119.93619 * 359.97438 * 16 15 2 36 36 H 1.08000 * 119.96700 * 179.97438 * 17 16 15 37 37 H 1.08002 * 120.03662 * 179.97438 * 18 17 16 38 38 H 1.08000 * 126.97463 * 0.02644 * 21 20 19 39 39 H 1.08005 * 126.73047 * 180.13501 * 22 21 20 40 40 H 1.08000 * 120.03346 * 359.97438 * 25 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6602 0.4055 -4.7514 8 1 2.3649 1.4380 -4.6356 9 6 3.0956 -0.0537 -5.9764 10 7 3.4546 -1.3110 -6.1176 11 14 3.1754 1.1099 -7.4355 12 1 2.7201 2.4602 -7.0174 13 1 4.5736 1.1895 -7.9293 14 1 2.2955 0.6051 -8.5200 15 6 2.0324 -0.7104 1.2306 16 6 2.0665 -2.0925 1.2647 17 6 2.5262 -2.7477 2.3920 18 6 2.9539 -2.0230 3.4876 19 6 2.9212 -0.6357 3.4560 20 7 3.3542 0.1028 4.5669 21 6 3.9111 -0.4089 5.6987 22 6 4.1769 0.6513 6.4973 23 7 3.7705 1.7393 5.8336 24 7 3.2890 1.3819 4.6960 25 6 2.4634 0.0196 2.3207 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.4496 -1.4979 -1.4099 30 1 2.7589 1.0461 -2.1182 31 1 1.0871 0.6163 -2.5525 32 1 3.5905 -0.9273 -3.3690 33 1 1.9185 -1.3566 -3.8029 34 1 3.7606 -1.6342 -6.9794 35 1 1.7327 -2.6612 0.4094 36 1 2.5514 -3.8272 2.4160 37 1 3.3126 -2.5353 4.3681 38 1 4.1041 -1.4494 5.9145 39 1 4.6252 0.6237 7.4796 40 1 2.4410 1.0989 2.2916 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287802968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:57 Heat of formation + Delta-G solvation = 122.716768 kcal Electronic energy + Delta-G solvation = -21170.707305 eV Core-core repulsion = 17987.507112 eV Total energy + Delta-G solvation = -3183.200192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.63936 -39.86062 -36.95807 -34.69359 -33.40334 -32.02763 -31.33164 -30.33477 -29.41549 -27.86911 -24.63611 -24.57194 -23.68784 -22.49881 -21.65983 -20.60104 -20.46070 -18.33744 -16.69361 -16.56637 -16.35976 -15.69639 -15.58891 -14.95943 -14.67075 -14.42759 -14.23471 -14.03814 -13.76629 -13.40914 -12.69647 -12.65080 -12.36689 -12.20223 -12.12086 -11.73801 -11.49908 -11.23817 -11.15579 -11.09373 -10.98292 -10.88902 -10.54089 -10.09644 -9.73858 -9.47627 -9.20236 -9.07970 -8.73383 -8.39120 -7.94006 -6.03135 -4.05664 0.42186 1.04720 1.79064 2.02355 2.29675 3.29373 3.37030 3.40903 3.46478 4.08200 4.19105 4.41660 4.53162 4.63854 4.73007 4.81209 4.90072 4.97821 5.03593 5.11169 5.28832 5.33261 5.34871 5.41812 5.62789 5.72900 5.79399 5.83596 6.03636 6.07810 6.13611 6.25512 6.29019 6.38970 6.45079 6.70468 6.91664 7.37186 7.66280 7.74847 7.87159 8.02965 8.20082 8.39335 9.01733 9.58533 11.08330 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.002766 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.949349 B =10118.687675 C =10460.186988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.116 3.884 3 H 0.088 0.912 4 N -0.683 5.683 5 C 0.066 3.934 6 C 0.025 3.975 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C -0.037 4.037 16 C -0.084 4.084 17 C -0.100 4.100 18 C -0.125 4.125 19 C 0.111 3.889 20 N -0.235 5.235 21 C -0.051 4.051 22 C -0.048 4.048 23 N -0.268 5.268 24 N -0.078 5.078 25 C -0.096 4.096 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.337 0.663 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.025 0.975 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 -4.026 23.173 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.005 3.995 3 H 0.106 0.894 4 N -0.313 5.313 5 C -0.062 4.062 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.038 4.038 16 C -0.102 4.102 17 C -0.119 4.119 18 C -0.145 4.145 19 C 0.020 3.980 20 N -0.022 5.022 21 C -0.199 4.199 22 C -0.204 4.204 23 N -0.134 5.134 24 N -0.056 5.056 25 C -0.116 4.116 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.210 0.790 39 H 0.211 0.789 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.672 -2.678 22.582 22.897 hybrid contribution -0.421 -0.493 -0.534 0.840 sum -3.093 -3.170 22.048 22.488 Atomic orbital electron populations 1.22480 0.96138 1.02402 1.02537 1.20500 0.92711 0.97695 0.88589 0.89374 1.60707 1.56232 1.10296 1.04074 1.22213 0.98446 0.95232 0.90287 1.19068 0.97018 0.95298 0.89819 1.21203 1.43923 0.96411 0.94473 0.92684 1.24998 0.95348 0.95110 0.98907 1.69973 1.44534 1.14360 1.24391 0.86537 0.77703 0.81141 0.82618 1.19745 1.20956 1.21025 1.19864 0.96061 0.93734 0.94177 1.21222 0.97236 0.94051 0.97739 1.21019 0.98231 1.00267 0.92337 1.20798 1.02743 0.90565 1.00425 1.17583 1.04178 0.90312 0.85896 1.44797 1.38551 1.06181 1.12699 1.23832 1.05534 1.02583 0.87977 1.23650 1.05954 0.88210 1.02573 1.75129 1.12401 1.26190 0.99687 1.78395 1.19376 0.92819 1.15039 1.20812 0.98686 1.01144 0.90997 0.92246 0.92260 0.91627 0.84438 0.92204 0.96281 0.95643 0.96799 0.93024 0.84688 0.84605 0.85179 0.79033 0.78922 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.14 37.16 0.34 -1.69 16 2 C 0.12 1.53 2.79 -68.86 -0.19 1.34 16 3 H 0.09 1.22 7.66 -51.93 -0.40 0.83 16 4 N -0.68 -11.07 5.70 -107.94 -0.62 -11.69 16 5 C 0.07 1.32 5.42 -3.82 -0.02 1.30 16 6 C 0.03 0.64 5.23 -27.88 -0.15 0.50 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 11 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.04 -0.45 4.95 -104.65 -0.52 -0.97 16 16 C -0.08 -0.90 9.32 -39.55 -0.37 -1.27 16 17 C -0.10 -0.88 10.04 -39.61 -0.40 -1.27 16 18 C -0.12 -1.10 9.46 -39.40 -0.37 -1.47 16 19 C 0.11 1.25 6.67 -83.57 -0.56 0.70 16 20 N -0.23 -2.78 3.56 -10.47 -0.04 -2.81 16 21 C -0.05 -0.44 10.91 -16.67 -0.18 -0.62 16 22 C -0.05 -0.45 12.05 -17.73 -0.21 -0.66 16 23 N -0.27 -3.61 12.39 30.24 0.37 -3.24 16 24 N -0.08 -1.10 12.43 60.35 0.75 -0.35 16 25 C -0.10 -1.18 9.24 -39.41 -0.36 -1.54 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 29 H 0.34 5.13 7.82 -39.29 -0.31 4.82 16 30 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 31 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.14 1.37 7.24 -52.49 -0.38 0.99 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.76 6.79 -52.49 -0.36 0.40 16 38 H 0.19 0.84 7.13 -52.49 -0.37 0.46 16 39 H 0.19 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.14 1.75 7.68 -52.49 -0.40 1.35 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -32.85 340.00 -7.58 -40.43 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.49 Total: 0.94 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -3.40 Total: -19.01 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 1.21 Total: -43.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.85 -7.58 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287802968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.146 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds