Wall clock time and date at job start Tue Mar 31 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99979 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47309 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47510 * 119.99847 * 11 9 7 14 14 H 1.48506 * 109.47246 * 239.99882 * 11 9 7 15 15 C 1.50708 * 109.47150 * 119.99765 * 2 1 3 16 16 C 1.38294 * 119.96558 * 80.00337 * 15 2 1 17 17 C 1.38259 * 120.13179 * 180.02562 * 16 15 2 18 18 C 1.38145 * 120.06291 * 359.94904 * 17 16 15 19 19 C 1.38811 * 119.93427 * 0.02853 * 18 17 16 20 20 N 1.40247 * 120.06560 * 179.97438 * 19 18 17 21 21 C 1.36120 * 125.94059 * 4.70952 * 20 19 18 22 22 C 1.35369 * 106.04734 * 179.88296 * 21 20 19 23 23 N 1.33776 * 106.53605 * 0.37655 * 22 21 20 24 24 N 1.28598 * 109.06466 * 359.75572 * 23 22 21 25 25 C 1.38100 * 119.96456 * 259.72850 * 15 2 1 26 26 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 28 28 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 29 29 H 1.00897 * 110.99542 * 321.04983 * 4 2 1 30 30 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 31 31 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 32 32 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 33 33 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 34 34 H 0.96996 * 120.00505 * 179.97438 * 10 9 7 35 35 H 1.08002 * 119.93619 * 359.97438 * 16 15 2 36 36 H 1.08000 * 119.96700 * 179.97438 * 17 16 15 37 37 H 1.08002 * 120.03662 * 179.97438 * 18 17 16 38 38 H 1.08000 * 126.97463 * 0.02644 * 21 20 19 39 39 H 1.08005 * 126.73047 * 180.13501 * 22 21 20 40 40 H 1.08000 * 120.03346 * 359.97438 * 25 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6602 0.4055 -4.7514 8 1 2.3649 1.4380 -4.6356 9 6 3.0956 -0.0537 -5.9764 10 7 3.4546 -1.3110 -6.1176 11 14 3.1754 1.1099 -7.4355 12 1 2.7201 2.4602 -7.0174 13 1 4.5736 1.1895 -7.9293 14 1 2.2955 0.6051 -8.5200 15 6 2.0324 -0.7104 1.2306 16 6 2.0665 -2.0925 1.2647 17 6 2.5262 -2.7477 2.3920 18 6 2.9539 -2.0230 3.4876 19 6 2.9212 -0.6357 3.4560 20 7 3.3542 0.1028 4.5669 21 6 3.9111 -0.4089 5.6987 22 6 4.1769 0.6513 6.4973 23 7 3.7705 1.7393 5.8336 24 7 3.2890 1.3819 4.6960 25 6 2.4634 0.0196 2.3207 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.4496 -1.4979 -1.4099 30 1 2.7589 1.0461 -2.1182 31 1 1.0871 0.6163 -2.5525 32 1 3.5905 -0.9273 -3.3690 33 1 1.9185 -1.3566 -3.8029 34 1 3.7606 -1.6342 -6.9794 35 1 1.7327 -2.6612 0.4094 36 1 2.5514 -3.8272 2.4160 37 1 3.3126 -2.5353 4.3681 38 1 4.1041 -1.4494 5.9145 39 1 4.6252 0.6237 7.4796 40 1 2.4410 1.0989 2.2916 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287802968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:57 Heat of formation + Delta-G solvation = 101.661084 kcal Electronic energy + Delta-G solvation = -21171.620347 eV Core-core repulsion = 17987.507112 eV Total energy + Delta-G solvation = -3184.113235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.43201 -40.71352 -38.15809 -35.80698 -35.08227 -33.35518 -32.26652 -31.30671 -30.47296 -29.32403 -26.20954 -25.42527 -24.82205 -23.43503 -22.70886 -22.15001 -21.36408 -19.19629 -18.48420 -17.51253 -17.33963 -16.76432 -16.59419 -16.31005 -16.00153 -15.67196 -15.23072 -15.02849 -14.64406 -14.38336 -14.24986 -14.12703 -13.63860 -13.32653 -13.02055 -12.99365 -12.87744 -12.63532 -12.51842 -12.32434 -12.05810 -12.02317 -11.92888 -11.85462 -11.39140 -11.23377 -10.57344 -10.48566 -9.94182 -9.56166 -9.29474 -8.21163 -6.31847 -0.36608 0.25672 1.02267 1.28310 1.39507 1.40309 1.53126 1.53226 2.39675 2.65456 3.12653 3.21770 3.44742 3.62429 3.79136 3.95163 4.04906 4.11068 4.20758 4.23853 4.30056 4.34763 4.49510 4.50947 4.62311 4.69776 4.76241 4.87730 4.95261 5.06445 5.11619 5.17074 5.31696 5.36005 5.41830 5.49088 5.60569 5.69075 5.79530 5.93215 6.12958 6.25626 6.53892 6.85614 7.37364 7.39019 8.91055 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.002766 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.949349 B =10118.687675 C =10460.186988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 H 0.074 0.926 4 N -0.685 5.685 5 C 0.085 3.915 6 C 0.033 3.967 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.930 5.930 11 Si 0.964 3.036 12 H -0.264 1.264 13 H -0.279 1.279 14 H -0.276 1.276 15 C -0.051 4.051 16 C -0.094 4.094 17 C -0.091 4.091 18 C -0.110 4.110 19 C 0.096 3.904 20 N -0.242 5.242 21 C -0.037 4.037 22 C -0.054 4.054 23 N -0.305 5.305 24 N -0.129 5.129 25 C -0.114 4.114 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.344 0.656 30 H 0.052 0.948 31 H 0.024 0.976 32 H -0.006 1.006 33 H -0.004 1.004 34 H 0.264 0.736 35 H 0.138 0.862 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.241 0.759 39 H 0.230 0.770 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -5.458 24.705 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.093 0.907 4 N -0.316 5.316 5 C -0.043 4.043 6 C -0.004 4.004 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.570 5.570 11 Si 0.788 3.212 12 H -0.188 1.188 13 H -0.205 1.205 14 H -0.202 1.202 15 C -0.052 4.052 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.131 4.131 19 C 0.006 3.994 20 N -0.029 5.029 21 C -0.185 4.185 22 C -0.210 4.210 23 N -0.170 5.170 24 N -0.107 5.107 25 C -0.134 4.134 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.163 0.837 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.012 0.988 33 H 0.014 0.986 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.257 0.743 39 H 0.246 0.754 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.645 -4.088 24.124 24.611 hybrid contribution -0.394 -0.142 -0.889 0.983 sum -3.039 -4.230 23.235 23.812 Atomic orbital electron populations 1.22393 0.94639 1.03203 1.02553 1.20460 0.93947 0.96918 0.87859 0.90728 1.60568 1.57334 1.10043 1.03643 1.21783 0.98092 0.94766 0.89693 1.18903 0.94986 0.94846 0.91688 1.21642 1.43916 0.96984 0.95674 0.92371 1.25928 0.94813 0.96806 1.02070 1.70094 1.45311 1.16260 1.25363 0.85418 0.77875 0.79130 0.78728 1.18770 1.20456 1.20192 1.19677 0.97537 0.94474 0.93495 1.21396 0.97588 0.93371 0.98914 1.21412 0.96455 1.01921 0.91177 1.21240 1.00917 0.89261 1.01651 1.17831 1.04608 0.91407 0.85583 1.44958 1.38599 1.05839 1.13537 1.24672 1.03116 1.04542 0.86182 1.24387 1.05410 0.87324 1.03880 1.75065 1.13366 1.28316 1.00214 1.78378 1.21881 0.94411 1.16000 1.20736 1.00029 1.00554 0.92113 0.91035 0.91140 0.92616 0.83708 0.92985 0.95758 0.98780 0.98553 0.92729 0.84398 0.81165 0.81234 0.74309 0.75355 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 9.14 71.98 0.66 -3.20 16 2 C 0.12 3.20 2.79 44.17 0.12 3.33 16 3 H 0.07 2.19 7.66 -2.39 -0.02 2.17 16 4 N -0.68 -22.65 5.70 -495.42 -2.83 -25.48 16 5 C 0.09 3.50 5.42 86.31 0.47 3.97 16 6 C 0.03 1.74 5.23 29.85 0.16 1.90 16 7 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.00 0.11 5.46 84.65 0.46 0.57 16 10 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 11 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 15 C -0.05 -1.22 4.95 -19.88 -0.10 -1.32 16 16 C -0.09 -1.87 9.32 22.29 0.21 -1.66 16 17 C -0.09 -1.29 10.04 22.25 0.22 -1.06 16 18 C -0.11 -1.54 9.46 22.38 0.21 -1.33 16 19 C 0.10 2.05 6.67 38.08 0.25 2.30 16 20 N -0.24 -5.44 3.56 -187.03 -0.67 -6.10 16 21 C -0.04 -0.52 10.91 83.36 0.91 0.39 16 22 C -0.05 -0.89 12.05 83.73 1.01 0.12 16 23 N -0.30 -8.22 12.39 -58.24 -0.72 -8.94 16 24 N -0.13 -3.75 12.43 37.02 0.46 -3.29 16 25 C -0.11 -2.85 9.24 22.38 0.21 -2.64 16 26 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.37 7.45 -2.39 -0.02 1.35 16 29 H 0.34 10.55 7.82 -89.70 -0.70 9.85 16 30 H 0.05 2.20 8.06 -2.39 -0.02 2.18 16 31 H 0.02 0.96 7.44 -2.39 -0.02 0.95 16 32 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 34 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.14 2.61 7.24 -2.91 -0.02 2.58 16 36 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.17 0.96 6.79 -2.91 -0.02 0.94 16 38 H 0.24 0.72 7.13 -2.91 -0.02 0.70 16 39 H 0.23 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.12 3.36 7.68 -2.91 -0.02 3.34 16 Total: -1.00 -74.60 340.00 3.93 -70.67 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.35 Total: 12.23 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 5.02 Total: -29.35 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -3.47 Total: -99.89 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -74.60 3.93 -70.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287802968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.335 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds