Wall clock time and date at job start Tue Mar 31 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46636 * 2 1 4 4 N 1.46494 * 109.47332 * 119.99874 * 2 1 3 5 5 C 1.35318 * 125.87212 * 275.30079 * 4 2 1 6 6 C 1.35349 * 106.17599 * 180.18632 * 5 4 2 7 7 C 1.50703 * 126.74973 * 179.85012 * 6 5 4 8 8 N 1.46494 * 109.46865 * 94.71236 * 7 6 5 9 9 C 1.38857 * 120.00003 * 179.97438 * 8 7 6 10 10 C 1.39562 * 119.84458 * 179.97438 * 9 8 7 11 11 C 1.36338 * 120.16376 * 180.25516 * 10 9 8 12 12 C 1.40886 * 119.83460 * 359.49783 * 11 10 9 13 13 C 1.41137 * 120.15606 * 180.25190 * 12 11 10 14 14 H 1.07995 * 119.99843 * 24.88071 * 13 12 11 15 15 C 1.39868 * 119.99750 * 204.88107 * 13 12 11 16 16 N 1.30905 * 120.00320 * 17.97818 * 15 13 12 17 17 Si 1.86807 * 119.99880 * 197.97722 * 15 13 12 18 18 H 1.48501 * 109.46869 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46809 * 120.00160 * 17 15 13 20 20 H 1.48506 * 109.47039 * 240.00216 * 17 15 13 21 21 C 1.40884 * 119.68868 * 0.52410 * 12 11 10 22 22 C 1.36337 * 119.83583 * 359.72616 * 21 12 11 23 23 N 1.33767 * 106.49719 * 359.58960 * 6 5 4 24 24 N 1.28633 * 108.88765 * 0.26173 * 23 6 5 25 25 H 1.09007 * 109.46978 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47616 * 299.99300 * 1 2 3 27 27 H 1.09003 * 109.47625 * 60.00244 * 1 2 3 28 28 H 1.08998 * 109.47616 * 240.00699 * 2 1 3 29 29 H 1.08999 * 109.46825 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47329 * 299.99947 * 3 2 1 31 31 H 1.09000 * 109.46852 * 60.00491 * 3 2 1 32 32 H 1.08001 * 126.90967 * 0.03336 * 5 4 2 33 33 H 1.09000 * 109.47001 * 334.71211 * 7 6 5 34 34 H 1.09006 * 109.47036 * 214.71033 * 7 6 5 35 35 H 0.97006 * 120.00694 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.92372 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.08583 * 179.74687 * 11 10 9 38 38 H 0.96992 * 120.00260 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.08483 * 179.70992 * 21 12 11 40 40 H 1.08005 * 119.92181 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1871 -0.1356 2.4187 6 6 2.6556 -1.1216 3.2189 7 6 3.0064 -1.0069 4.6800 8 7 1.8586 -1.4196 5.4915 9 6 1.9447 -1.3989 6.8772 10 6 0.8491 -1.7922 7.6471 11 6 0.9247 -1.7695 9.0082 12 6 2.1162 -1.3576 9.6372 13 6 2.2038 -1.3366 11.0457 14 1 1.5677 -1.9795 11.6359 15 6 3.1143 -0.4830 11.6770 16 7 3.6252 0.5289 11.0223 17 14 3.6015 -0.7871 13.4547 18 1 2.8884 -1.9854 13.9652 19 1 5.0673 -1.0111 13.5348 20 1 3.2355 0.3940 14.2772 21 6 3.2180 -0.9615 8.8536 22 6 3.1264 -0.9844 7.4936 23 7 2.7407 -2.2193 2.4591 24 7 2.3559 -1.9307 1.2660 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 3.1298 1.4426 0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.9902 0.8886 2.6989 33 1 3.2626 0.0268 4.9121 34 1 3.8578 -1.6508 4.9009 35 1 1.0384 -1.7074 5.0608 36 1 -0.0625 -2.1111 7.1636 37 1 0.0748 -2.0702 9.6028 38 1 4.2564 1.1210 11.4603 39 1 4.1330 -0.6402 9.3292 40 1 3.9700 -0.6806 6.8915 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289513471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:52 Heat of formation + Delta-G solvation = 98.403411 kcal Electronic energy + Delta-G solvation = -21180.687781 eV Core-core repulsion = 17996.433283 eV Total energy + Delta-G solvation = -3184.254498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.34143 -39.73975 -37.62095 -36.72233 -34.93615 -32.81751 -32.20200 -31.31664 -30.38557 -28.36149 -27.60212 -25.63708 -24.86793 -23.24101 -22.39607 -21.78909 -21.36142 -19.12309 -18.42732 -17.69660 -17.37865 -16.76340 -16.38656 -15.93965 -15.63005 -15.47554 -14.94229 -14.70879 -14.44278 -14.23390 -14.05561 -13.70232 -13.53590 -13.43366 -13.19923 -12.99894 -12.75729 -12.69525 -12.54393 -12.48412 -12.26191 -12.18913 -11.82698 -11.55189 -11.19037 -11.05851 -11.04322 -10.33567 -10.27922 -9.37066 -8.52461 -8.14883 -5.97898 0.57752 1.13010 1.21665 1.31880 1.40469 1.42400 1.56401 1.60280 2.29965 2.87167 3.03132 3.26500 3.51361 3.78025 3.84126 3.89016 3.99073 4.09200 4.36870 4.47408 4.52482 4.58275 4.62576 4.69673 4.75487 4.77796 4.95663 5.03369 5.07609 5.14349 5.16159 5.21827 5.30633 5.48734 5.67656 5.71030 5.82366 5.98770 6.22228 6.42078 6.68980 6.88487 7.11536 7.12684 7.30336 7.45470 8.51240 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.002709 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.971279 B =10332.519314 C =10484.215299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 C -0.162 4.162 4 N -0.277 5.277 5 C -0.012 4.012 6 C -0.048 4.048 7 C 0.227 3.773 8 N -0.746 5.746 9 C 0.114 3.886 10 C -0.165 4.165 11 C -0.196 4.196 12 C 0.035 3.965 13 C -0.505 4.505 14 H 0.066 0.934 15 C 0.032 3.968 16 N -0.839 5.839 17 Si 0.975 3.025 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.268 1.268 21 C -0.142 4.142 22 C -0.171 4.171 23 N -0.296 5.296 24 N -0.115 5.115 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.224 0.776 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.392 0.608 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.282 0.718 39 H 0.101 0.899 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 6.024 -21.938 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.071 5.071 5 C -0.165 4.165 6 C -0.187 4.187 7 C 0.101 3.899 8 N -0.381 5.381 9 C 0.015 3.985 10 C -0.187 4.187 11 C -0.216 4.216 12 C 0.033 3.967 13 C -0.536 4.536 14 H 0.084 0.916 15 C -0.180 4.180 16 N -0.468 5.468 17 Si 0.797 3.203 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.193 1.193 21 C -0.162 4.162 22 C -0.194 4.194 23 N -0.163 5.163 24 N -0.093 5.093 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.240 0.760 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.225 0.775 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.886 4.958 -22.801 23.511 hybrid contribution -0.138 0.620 1.320 1.465 sum -3.025 5.578 -21.480 22.398 Atomic orbital electron populations 1.22237 0.91344 1.03106 1.05256 1.22187 0.96692 0.94790 0.83606 1.22253 1.02174 0.91592 1.05937 1.48032 1.40697 1.07509 1.10911 1.23778 1.05085 1.02964 0.84651 1.22023 1.07846 0.90758 0.98040 1.19136 0.89116 1.00290 0.81369 1.43828 1.15574 1.77391 1.01307 1.17398 0.94633 1.03111 0.83320 1.20062 0.97617 1.07599 0.93438 1.20738 0.97024 1.09702 0.94121 1.17824 0.91380 0.93535 0.94007 1.19596 1.20213 1.21498 0.92334 0.91585 1.26584 0.94276 0.92799 1.04294 1.69912 1.25177 1.11446 1.40220 0.85273 0.78726 0.79132 0.77184 1.18637 1.19161 1.19287 1.20876 0.98555 1.04084 0.92714 1.20260 0.96927 1.07608 0.94564 1.75051 1.17428 1.26163 0.97620 1.78214 1.17486 0.97992 1.15646 0.93081 0.91481 0.86781 0.86197 0.91829 0.86799 0.90387 0.75951 0.90046 0.92920 0.77453 0.86904 0.88604 0.90743 0.88110 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.52 71.98 0.68 -0.56 16 2 C 0.13 1.23 3.85 44.99 0.17 1.40 16 3 C -0.16 -0.74 8.84 71.98 0.64 -0.10 16 4 N -0.28 -5.33 3.25 -327.18 -1.06 -6.40 16 5 C -0.01 -0.23 10.62 83.49 0.89 0.65 16 6 C -0.05 -1.30 6.61 41.60 0.28 -1.02 16 7 C 0.23 6.82 5.45 85.64 0.47 7.28 16 8 N -0.75 -25.86 5.69 -342.71 -1.95 -27.81 16 9 C 0.11 4.95 6.67 38.67 0.26 5.20 16 10 C -0.16 -7.42 9.82 22.15 0.22 -7.20 16 11 C -0.20 -9.98 9.74 22.47 0.22 -9.76 16 12 C 0.04 1.99 5.57 -21.27 -0.12 1.88 16 13 C -0.51 -28.71 9.03 23.38 0.21 -28.50 16 14 H 0.07 3.67 7.91 -2.91 -0.02 3.64 16 15 C 0.03 1.72 5.13 85.23 0.44 2.16 16 16 N -0.84 -45.75 10.96 21.82 0.24 -45.51 16 17 Si 0.98 40.46 29.60 68.60 2.03 42.49 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 21 C -0.14 -7.71 8.64 22.47 0.19 -7.52 16 22 C -0.17 -8.05 9.23 22.15 0.20 -7.84 16 23 N -0.30 -9.52 12.41 -48.60 -0.60 -10.13 16 24 N -0.11 -3.19 13.17 37.02 0.49 -2.70 16 25 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.08 0.30 7.18 -2.39 -0.02 0.29 16 32 H 0.22 2.62 7.31 -2.91 -0.02 2.60 16 33 H 0.08 2.21 7.93 -2.39 -0.02 2.19 16 34 H 0.05 1.74 7.93 -2.38 -0.02 1.72 16 35 H 0.39 12.70 8.46 -92.70 -0.78 11.92 16 36 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 39 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 40 H 0.11 4.58 6.68 -2.91 -0.02 4.56 16 Total: -1.00 -70.56 337.93 4.15 -66.40 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.27 Total: 27.59 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 4.75 Total: -43.93 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -2.89 Total: -92.55 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -70.56 4.15 -66.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289513471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.807 kcal (2) G-P(sol) polarization free energy of solvation -70.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds