Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38185 * 119.49769 * 2 1 4 4 C 1.39449 * 119.29130 * 179.69955 * 3 2 1 5 5 N 1.39197 * 120.82409 * 180.29389 * 4 3 2 6 6 C 1.46502 * 120.00187 * 180.22332 * 5 4 3 7 7 C 1.53043 * 109.46192 * 275.03416 * 6 5 4 8 8 C 1.53189 * 109.31661 * 178.60086 * 7 6 5 9 9 N 1.46932 * 108.76335 * 54.64839 * 8 7 6 10 10 C 1.36938 * 120.62621 * 126.41130 * 9 8 7 11 11 H 1.08007 * 119.99767 * 331.82230 * 10 9 8 12 12 C 1.38805 * 119.99818 * 151.82808 * 10 9 8 13 13 N 1.31612 * 120.00162 * 343.06690 * 12 10 9 14 14 Si 1.86804 * 119.99924 * 163.06584 * 12 10 9 15 15 H 1.48498 * 109.47313 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47227 * 119.99736 * 14 12 10 17 17 H 1.48497 * 109.47402 * 240.00021 * 14 12 10 18 18 C 1.46921 * 118.73994 * 306.38589 * 9 8 7 19 19 C 1.53037 * 109.46233 * 154.97627 * 6 5 4 20 20 C 1.39390 * 118.35315 * 0.51468 * 4 3 2 21 21 C 1.39141 * 118.95243 * 359.50811 * 20 4 3 22 22 C 1.43198 * 119.70370 * 180.24999 * 21 20 4 23 23 N 4.69925 * 132.22978 * 179.97438 * 2 1 3 24 24 N 1.31683 * 119.49871 * 179.97438 * 2 1 3 25 25 H 1.09008 * 109.47411 * 270.02002 * 1 2 3 26 26 H 1.08996 * 109.47125 * 30.02094 * 1 2 3 27 27 H 1.09000 * 109.47014 * 150.02702 * 1 2 3 28 28 H 1.08002 * 120.35422 * 359.97438 * 3 2 1 29 29 H 0.96999 * 120.00290 * 0.22642 * 5 4 3 30 30 H 1.09000 * 109.45909 * 35.00062 * 6 5 4 31 31 H 1.09001 * 109.49312 * 298.56369 * 7 6 5 32 32 H 1.09000 * 109.50089 * 58.65451 * 7 6 5 33 33 H 1.09005 * 109.59423 * 294.86623 * 8 7 6 34 34 H 1.08999 * 109.70542 * 174.50271 * 8 7 6 35 35 H 0.97010 * 119.99884 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.59014 * 293.82408 * 18 9 8 37 37 H 1.09000 * 109.69998 * 173.46592 * 18 9 8 38 38 H 1.09000 * 109.49362 * 301.33855 * 19 6 5 39 39 H 1.09004 * 109.49668 * 61.43614 * 19 6 5 40 40 H 1.07999 * 120.52692 * 179.78186 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2027 0.0000 4 6 3.5819 1.1977 0.0064 5 7 4.2994 2.3905 0.0127 6 6 5.7642 2.3642 0.0144 7 6 6.2699 2.2219 1.4518 8 6 7.8006 2.1597 1.4466 9 7 8.3191 3.3380 0.7385 10 6 9.2419 4.1580 1.3312 11 1 9.2702 4.2503 2.4069 12 6 10.1407 4.8706 0.5494 13 7 10.3404 4.5248 -0.7046 14 14 11.0667 6.3204 1.2773 15 1 10.6665 6.5017 2.6958 16 1 12.5273 6.0617 1.2049 17 1 10.7432 7.5501 0.5103 18 6 7.8292 3.6195 -0.6178 19 6 6.2982 3.6651 -0.5894 20 6 4.2394 -0.0313 0.0015 21 6 3.4837 -1.1996 0.0010 22 6 4.1426 -2.4710 0.0015 23 7 4.6654 -3.4796 0.0016 24 7 2.1554 -1.1461 0.0005 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6450 2.1367 -0.0004 29 1 3.8296 3.2391 0.0160 30 1 6.1129 1.5187 -0.5785 31 1 5.9425 3.0798 2.0392 32 1 5.8702 1.3071 1.8893 33 1 8.1278 1.2536 0.9366 34 1 8.1717 2.1565 2.4714 35 1 10.9688 5.0226 -1.2508 36 1 8.1587 2.8324 -1.2960 37 1 8.2171 4.5801 -0.9566 38 1 5.9186 3.7775 -1.6049 39 1 5.9705 4.5092 0.0175 40 1 5.3185 -0.0761 0.0027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308275196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = 65.973784 kcal Electronic energy + Delta-G solvation = -21851.111223 eV Core-core repulsion = 18665.450471 eV Total energy + Delta-G solvation = -3185.660752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49576 -39.60620 -37.78686 -36.97098 -34.46006 -33.77285 -32.52275 -31.49015 -30.21671 -28.69501 -26.71595 -25.81909 -23.95593 -23.71898 -22.05145 -21.00628 -20.08184 -18.88265 -17.84209 -17.26712 -16.88380 -16.30674 -15.97942 -15.93565 -15.46317 -15.33991 -14.84258 -14.78473 -14.65100 -14.39808 -14.25159 -14.01817 -13.82127 -13.35777 -13.15303 -13.02991 -12.93815 -12.80147 -12.61994 -12.40047 -12.34356 -12.04261 -11.92308 -11.74760 -11.30156 -11.19225 -10.59806 -10.55712 -9.93635 -8.80285 -8.69984 -7.89065 -5.33962 -0.34774 0.47226 1.40867 1.46226 1.49157 1.58806 1.82184 2.22982 2.51033 2.54867 2.94511 3.27577 3.60229 3.67080 3.87438 4.00318 4.03318 4.11152 4.28095 4.28957 4.47589 4.50592 4.65212 4.66873 4.84041 4.89274 4.95695 4.95959 5.01257 5.08152 5.16101 5.17925 5.26773 5.34451 5.49613 5.62465 5.64877 5.73676 6.13618 6.24006 6.38919 6.75629 6.96832 7.14757 7.85186 8.35665 9.17633 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.003484 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.393613 B = 8034.027100 C = 8630.773944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.165 3.835 3 C -0.215 4.215 4 C 0.260 3.740 5 N -0.711 5.711 6 C 0.163 3.837 7 C -0.130 4.130 8 C 0.141 3.859 9 N -0.610 5.610 10 C -0.262 4.262 11 H 0.066 0.934 12 C -0.048 4.048 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.267 1.267 16 H -0.295 1.295 17 H -0.288 1.288 18 C 0.178 3.822 19 C -0.129 4.129 20 C -0.207 4.207 21 C 0.218 3.782 22 C 0.288 3.712 23 N -0.434 5.434 24 N -0.521 5.521 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.171 0.829 29 H 0.415 0.585 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.013 0.987 34 H 0.053 0.947 35 H 0.250 0.750 36 H -0.002 1.002 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.586 -2.362 0.822 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.027 3.973 3 C -0.241 4.241 4 C 0.145 3.855 5 N -0.338 5.338 6 C 0.058 3.942 7 C -0.170 4.170 8 C 0.015 3.985 9 N -0.334 5.334 10 C -0.393 4.393 11 H 0.083 0.917 12 C -0.244 4.244 13 N -0.580 5.580 14 Si 0.793 3.207 15 H -0.192 1.192 16 H -0.223 1.223 17 H -0.215 1.215 18 C 0.051 3.949 19 C -0.169 4.169 20 C -0.236 4.236 21 C 0.081 3.919 22 C -0.029 4.029 23 N -0.111 5.111 24 N -0.237 5.237 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.188 0.812 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.016 0.984 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.937 -4.617 0.728 20.478 hybrid contribution 1.478 1.927 0.123 2.432 sum -18.459 -2.690 0.851 18.674 Atomic orbital electron populations 1.20835 0.85919 1.04674 1.04341 1.21433 0.98150 0.86371 0.91381 1.21862 0.91509 1.01098 1.09609 1.17945 0.91547 0.86370 0.89608 1.44805 1.05060 1.05370 1.78523 1.20776 0.78851 0.98599 0.95978 1.22298 0.95997 1.01899 0.96847 1.21022 0.92807 0.88659 0.96043 1.44353 1.47194 1.26684 1.15148 1.19526 1.08740 1.19259 0.91727 0.91679 1.25758 0.98352 1.03239 0.97023 1.70172 1.37963 1.41030 1.08814 0.85258 0.77634 0.79549 0.78297 1.19153 1.22257 1.21477 1.20558 0.89877 0.99239 0.85178 1.22227 0.97215 0.96629 1.00818 1.21493 1.01314 0.90781 1.10021 1.15873 0.89421 0.85589 1.00970 1.25363 0.92378 0.92089 0.93046 1.81227 1.09894 1.11140 1.08841 1.67385 1.06893 1.31438 1.18007 0.88995 0.87966 0.90730 0.81174 0.74696 0.91067 0.91900 0.90929 0.96864 0.92841 0.94082 0.98402 0.92371 0.90516 0.91662 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.16 71.24 0.72 -0.23 16 2 C 0.17 2.77 6.78 42.57 0.29 3.05 16 3 C -0.22 -3.15 9.62 22.55 0.22 -2.93 16 4 C 0.26 4.97 6.67 38.54 0.26 5.22 16 5 N -0.71 -13.54 5.24 -318.37 -1.67 -15.20 16 6 C 0.16 4.30 2.13 45.02 0.10 4.39 16 7 C -0.13 -3.80 5.64 30.67 0.17 -3.62 16 8 C 0.14 5.44 6.52 86.36 0.56 6.00 16 9 N -0.61 -28.83 2.99 -699.09 -2.09 -30.93 16 10 C -0.26 -13.89 9.58 84.03 0.81 -13.08 16 11 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 12 C -0.05 -2.60 4.92 84.86 0.42 -2.19 16 13 N -0.93 -53.54 11.19 21.65 0.24 -53.29 16 14 Si 0.96 43.52 29.59 68.60 2.03 45.55 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 18 C 0.18 7.86 5.30 86.36 0.46 8.31 16 19 C -0.13 -4.01 5.55 30.67 0.17 -3.84 16 20 C -0.21 -4.67 8.63 22.76 0.20 -4.47 16 21 C 0.22 5.30 6.58 40.44 0.27 5.56 16 22 C 0.29 7.95 15.53 88.33 1.37 9.32 16 23 N -0.43 -13.49 18.54 19.00 0.35 -13.14 16 24 N -0.52 -11.94 10.18 -177.64 -1.81 -13.75 16 25 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.10 0.47 8.07 -2.39 -0.02 0.45 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 29 H 0.42 6.13 8.63 -92.71 -0.80 5.33 16 30 H 0.07 2.01 6.54 -2.39 -0.02 1.99 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.88 7.84 -2.39 -0.02 1.86 16 33 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 35 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 36 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.14 3.24 6.38 -2.91 -0.02 3.22 16 Total: -1.00 -64.88 335.36 3.32 -61.56 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.26 Total: 7.70 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.00 Total: 11.50 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -4.97 Total: -126.32 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -64.88 3.32 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308275196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.535 kcal (2) G-P(sol) polarization free energy of solvation -64.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds