Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31710 * 119.74710 * 2 1 4 4 C 1.32573 * 121.64225 * 180.02562 * 3 2 1 5 5 N 1.38588 * 119.53180 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00036 * 179.97438 * 5 4 3 7 7 C 1.53042 * 109.45961 * 275.06800 * 6 5 4 8 8 C 1.53195 * 109.31176 * 178.61490 * 7 6 5 9 9 N 1.46924 * 108.77677 * 54.63210 * 8 7 6 10 10 C 1.36939 * 120.62687 * 126.37063 * 9 8 7 11 11 H 1.07999 * 120.00320 * 331.85957 * 10 9 8 12 12 C 1.38808 * 119.99734 * 151.86584 * 10 9 8 13 13 N 1.31627 * 120.00409 * 343.06159 * 12 10 9 14 14 Si 1.86805 * 120.00222 * 163.06637 * 12 10 9 15 15 H 1.48495 * 109.47302 * 89.99655 * 14 12 10 16 16 H 1.48495 * 109.47274 * 210.00121 * 14 12 10 17 17 H 1.48502 * 109.46661 * 329.99737 * 14 12 10 18 18 C 1.46923 * 118.74107 * 306.39314 * 9 8 7 19 19 C 1.53041 * 109.46221 * 154.99989 * 6 5 4 20 20 C 1.39356 * 120.93302 * 359.71959 * 4 3 2 21 21 C 1.36889 * 119.38712 * 0.57908 * 20 4 3 22 22 C 1.39584 * 119.74237 * 180.02562 * 2 1 3 23 23 C 1.43198 * 120.48034 * 0.02562 * 22 2 1 24 24 N 3.48990 * 80.38583 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47254 * 269.98313 * 1 2 3 26 26 H 1.09004 * 109.46497 * 29.97850 * 1 2 3 27 27 H 1.08995 * 109.47059 * 149.97653 * 1 2 3 28 28 H 0.97002 * 119.99844 * 359.97438 * 5 4 3 29 29 H 1.09000 * 109.46099 * 35.02638 * 6 5 4 30 30 H 1.08991 * 109.49761 * 298.56507 * 7 6 5 31 31 H 1.08997 * 109.49668 * 58.66464 * 7 6 5 32 32 H 1.09005 * 109.58513 * 294.85173 * 8 7 6 33 33 H 1.08993 * 109.70469 * 174.49246 * 8 7 6 34 34 H 0.96994 * 120.00150 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.59004 * 293.82007 * 18 9 8 36 36 H 1.09001 * 109.70602 * 173.46033 * 18 9 8 37 37 H 1.09008 * 109.49693 * 301.34147 * 19 6 5 38 38 H 1.09002 * 109.49471 * 61.39865 * 19 6 5 39 39 H 1.08001 * 120.30533 * 180.29211 * 20 4 3 40 40 H 1.07999 * 120.75976 * 179.71261 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1605 1.1435 0.0000 4 6 3.4855 1.1874 -0.0005 5 7 4.1284 2.4151 -0.0010 6 6 5.5921 2.4756 -0.0010 7 6 6.1067 2.3698 1.4364 8 6 7.6384 2.3986 1.4295 9 7 8.0856 3.6022 0.7154 10 6 8.9581 4.4785 1.3036 11 1 8.9818 4.5772 2.3788 12 6 9.8121 5.2401 0.5178 13 7 10.0314 4.9012 -0.7350 14 14 10.6504 6.7460 1.2383 15 1 11.9524 6.3508 1.8331 16 1 10.8798 7.7460 0.1647 17 1 9.7852 7.3384 2.2899 18 6 7.5786 3.8479 -0.6415 19 6 6.0476 3.8030 -0.6114 20 6 4.2410 0.0164 0.0048 21 6 3.6029 -1.1947 -0.0015 22 6 2.1995 -1.2120 -0.0005 23 6 1.4883 -2.4549 -0.0016 24 7 0.9241 -3.4409 -0.0015 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 3.6091 3.2345 -0.0014 29 1 5.9896 1.6494 -0.5905 30 1 5.7298 3.2093 2.0204 31 1 5.7624 1.4348 1.8782 32 1 8.0182 1.5111 0.9233 33 1 8.0101 2.4221 2.4539 34 1 10.6279 5.4336 -1.2842 35 1 7.9535 3.0787 -1.3166 36 1 7.9086 4.8282 -0.9852 37 1 5.6611 3.8881 -1.6271 38 1 5.6707 4.6290 -0.0084 39 1 5.3200 0.0639 0.0091 40 1 4.1666 -2.1159 -0.0022 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311897557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = 83.679144 kcal Electronic energy + Delta-G solvation = -21782.445302 eV Core-core repulsion = 18597.552311 eV Total energy + Delta-G solvation = -3184.892990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67436 -38.30155 -36.69687 -35.33664 -33.13825 -32.83644 -31.33576 -30.14740 -29.21612 -27.85653 -25.23264 -23.60040 -22.82693 -22.24161 -21.37364 -19.55477 -18.83620 -17.70783 -16.83021 -16.71246 -15.12935 -15.11530 -14.80393 -14.42119 -13.92924 -13.86477 -13.70185 -13.53012 -13.31272 -13.28196 -13.05434 -12.93779 -12.60122 -12.48672 -12.41124 -12.16344 -11.60202 -11.20951 -10.98798 -10.79898 -10.75201 -10.46930 -10.27817 -10.05808 -9.90217 -9.74265 -9.64819 -9.57541 -8.57477 -7.75700 -6.80406 -5.89673 -3.32295 0.73508 1.17864 2.60380 2.95643 3.02611 3.31668 3.39310 3.41163 3.81878 3.91305 4.23901 4.41416 4.52912 4.80619 5.07671 5.08918 5.25821 5.32005 5.34197 5.35066 5.38183 5.40993 5.60055 5.76369 5.81021 5.88500 5.95496 6.10698 6.17197 6.30245 6.34715 6.41078 6.47419 6.63786 6.81347 6.96759 7.18420 7.40423 7.47805 7.55280 7.70839 8.00518 8.34247 9.10365 9.73199 10.28738 11.19358 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.043509 B = 0.003063 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.395927 B = 9139.352300 C = 9367.133618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.237 3.763 3 N -0.551 5.551 4 C 0.442 3.558 5 N -0.700 5.700 6 C 0.153 3.847 7 C -0.146 4.146 8 C 0.147 3.853 9 N -0.592 5.592 10 C -0.255 4.255 11 H 0.066 0.934 12 C 0.004 3.996 13 N -0.903 5.903 14 Si 0.902 3.098 15 H -0.286 1.286 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.174 3.826 19 C -0.147 4.147 20 C -0.245 4.245 21 C 0.019 3.981 22 C -0.172 4.172 23 C 0.276 3.724 24 N -0.442 5.442 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.405 0.595 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.255 0.745 35 H 0.022 0.978 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.145 0.855 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -7.046 0.251 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.270 5.270 4 C 0.202 3.798 5 N -0.326 5.326 6 C 0.049 3.951 7 C -0.187 4.187 8 C 0.020 3.980 9 N -0.315 5.315 10 C -0.385 4.385 11 H 0.084 0.916 12 C -0.195 4.195 13 N -0.547 5.547 14 Si 0.732 3.268 15 H -0.213 1.213 16 H -0.215 1.215 17 H -0.205 1.205 18 C 0.048 3.952 19 C -0.187 4.187 20 C -0.270 4.270 21 C -0.008 4.008 22 C -0.182 4.182 23 C -0.039 4.039 24 N -0.119 5.119 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.241 0.759 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.163 0.837 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.408 -7.645 0.129 16.311 hybrid contribution 1.053 0.744 0.309 1.326 sum -13.355 -6.901 0.438 15.039 Atomic orbital electron populations 1.20840 0.88551 1.03819 1.03708 1.20950 0.96149 0.85921 0.87649 1.67159 1.07543 1.28749 1.23573 1.18635 0.87893 0.87073 0.86166 1.45229 1.07162 1.04592 1.75576 1.21260 0.76192 1.00164 0.97479 1.22528 0.99491 1.01115 0.95537 1.20882 0.90196 0.90040 0.96907 1.44080 1.51080 1.21830 1.14464 1.19162 1.12320 1.15443 0.91570 0.91622 1.25052 0.97179 1.00678 0.96574 1.70009 1.38299 1.38790 1.07583 0.86308 0.79470 0.82886 0.78177 1.21318 1.21507 1.20456 1.20754 0.85804 1.02370 0.86298 1.22551 1.01905 0.94905 0.99309 1.21206 1.01830 0.91191 1.12815 1.21012 0.91748 0.98479 0.89607 1.16450 0.92918 0.87654 1.21161 1.25376 0.93184 0.92495 0.92822 1.81241 1.08743 1.10848 1.11067 0.89604 0.89576 0.90763 0.75934 0.90173 0.91761 0.92640 0.96225 0.92341 0.93501 0.95991 0.88884 0.92436 0.91889 0.83705 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.78 36.01 0.35 -0.57 16 2 C 0.24 2.58 6.82 -82.14 -0.56 2.02 16 3 N -0.55 -6.79 10.30 -8.36 -0.09 -6.87 16 4 C 0.44 5.46 7.62 -155.19 -1.18 4.27 16 5 N -0.70 -8.70 5.23 -53.91 -0.28 -8.98 16 6 C 0.15 2.15 2.10 -67.89 -0.14 2.01 16 7 C -0.15 -2.20 5.55 -26.61 -0.15 -2.35 16 8 C 0.15 2.74 6.52 -3.71 -0.02 2.72 16 9 N -0.59 -13.54 2.99 -172.32 -0.52 -14.05 16 10 C -0.26 -6.59 9.58 -15.06 -0.14 -6.74 16 11 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 12 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 13 N -0.90 -24.84 11.20 55.49 0.62 -24.22 16 14 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C 0.17 3.72 5.30 -3.71 -0.02 3.70 16 19 C -0.15 -2.38 5.55 -26.61 -0.15 -2.53 16 20 C -0.25 -2.72 8.73 -39.65 -0.35 -3.07 16 21 C 0.02 0.18 9.85 -39.27 -0.39 -0.20 16 22 C -0.17 -1.83 5.75 -106.67 -0.61 -2.45 16 23 C 0.28 3.16 13.82 -22.47 -0.31 2.85 16 24 N -0.44 -5.86 18.54 41.84 0.78 -5.09 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.59 7.08 -51.93 -0.37 0.22 16 28 H 0.40 4.80 8.72 -40.82 -0.36 4.44 16 29 H 0.08 1.12 6.44 -51.93 -0.33 0.79 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.15 1.54 6.02 -52.49 -0.32 1.22 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -28.43 332.15 -8.70 -37.12 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.43 Total: 1.72 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -3.76 Total: -0.33 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.51 Total: -59.22 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.43 -8.70 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311897557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.803 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds