Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31710 * 119.74710 * 2 1 4 4 C 1.32573 * 121.64225 * 180.02562 * 3 2 1 5 5 N 1.38588 * 119.53180 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00036 * 179.97438 * 5 4 3 7 7 C 1.53042 * 109.45961 * 275.06800 * 6 5 4 8 8 C 1.53195 * 109.31176 * 178.61490 * 7 6 5 9 9 N 1.46924 * 108.77677 * 54.63210 * 8 7 6 10 10 C 1.36939 * 120.62687 * 126.37063 * 9 8 7 11 11 H 1.07999 * 120.00320 * 331.85957 * 10 9 8 12 12 C 1.38808 * 119.99734 * 151.86584 * 10 9 8 13 13 N 1.31627 * 120.00409 * 343.06159 * 12 10 9 14 14 Si 1.86805 * 120.00222 * 163.06637 * 12 10 9 15 15 H 1.48495 * 109.47302 * 89.99655 * 14 12 10 16 16 H 1.48495 * 109.47274 * 210.00121 * 14 12 10 17 17 H 1.48502 * 109.46661 * 329.99737 * 14 12 10 18 18 C 1.46923 * 118.74107 * 306.39314 * 9 8 7 19 19 C 1.53041 * 109.46221 * 154.99989 * 6 5 4 20 20 C 1.39356 * 120.93302 * 359.71959 * 4 3 2 21 21 C 1.36889 * 119.38712 * 0.57908 * 20 4 3 22 22 C 1.39584 * 119.74237 * 180.02562 * 2 1 3 23 23 C 1.43198 * 120.48034 * 0.02562 * 22 2 1 24 24 N 3.48990 * 80.38583 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47254 * 269.98313 * 1 2 3 26 26 H 1.09004 * 109.46497 * 29.97850 * 1 2 3 27 27 H 1.08995 * 109.47059 * 149.97653 * 1 2 3 28 28 H 0.97002 * 119.99844 * 359.97438 * 5 4 3 29 29 H 1.09000 * 109.46099 * 35.02638 * 6 5 4 30 30 H 1.08991 * 109.49761 * 298.56507 * 7 6 5 31 31 H 1.08997 * 109.49668 * 58.66464 * 7 6 5 32 32 H 1.09005 * 109.58513 * 294.85173 * 8 7 6 33 33 H 1.08993 * 109.70469 * 174.49246 * 8 7 6 34 34 H 0.96994 * 120.00150 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.59004 * 293.82007 * 18 9 8 36 36 H 1.09001 * 109.70602 * 173.46033 * 18 9 8 37 37 H 1.09008 * 109.49693 * 301.34147 * 19 6 5 38 38 H 1.09002 * 109.49471 * 61.39865 * 19 6 5 39 39 H 1.08001 * 120.30533 * 180.29211 * 20 4 3 40 40 H 1.07999 * 120.75976 * 179.71261 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1605 1.1435 0.0000 4 6 3.4855 1.1874 -0.0005 5 7 4.1284 2.4151 -0.0010 6 6 5.5921 2.4756 -0.0010 7 6 6.1067 2.3698 1.4364 8 6 7.6384 2.3986 1.4295 9 7 8.0856 3.6022 0.7154 10 6 8.9581 4.4785 1.3036 11 1 8.9818 4.5772 2.3788 12 6 9.8121 5.2401 0.5178 13 7 10.0314 4.9012 -0.7350 14 14 10.6504 6.7460 1.2383 15 1 11.9524 6.3508 1.8331 16 1 10.8798 7.7460 0.1647 17 1 9.7852 7.3384 2.2899 18 6 7.5786 3.8479 -0.6415 19 6 6.0476 3.8030 -0.6114 20 6 4.2410 0.0164 0.0048 21 6 3.6029 -1.1947 -0.0015 22 6 2.1995 -1.2120 -0.0005 23 6 1.4883 -2.4549 -0.0016 24 7 0.9241 -3.4409 -0.0015 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 3.6091 3.2345 -0.0014 29 1 5.9896 1.6494 -0.5905 30 1 5.7298 3.2093 2.0204 31 1 5.7624 1.4348 1.8782 32 1 8.0182 1.5111 0.9233 33 1 8.0101 2.4221 2.4539 34 1 10.6279 5.4336 -1.2842 35 1 7.9535 3.0787 -1.3166 36 1 7.9086 4.8282 -0.9852 37 1 5.6611 3.8881 -1.6271 38 1 5.6707 4.6290 -0.0084 39 1 5.3200 0.0639 0.0091 40 1 4.1666 -2.1159 -0.0022 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311897557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = 68.209005 kcal Electronic energy + Delta-G solvation = -21783.116137 eV Core-core repulsion = 18597.552311 eV Total energy + Delta-G solvation = -3185.563826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56256 -39.58772 -37.74035 -36.61157 -34.33887 -33.94839 -32.67717 -31.57120 -30.61848 -28.64373 -26.89673 -24.68997 -24.00112 -23.59952 -22.57377 -20.92750 -19.77005 -18.94946 -18.29433 -17.68774 -16.82506 -16.10081 -15.98067 -15.62135 -15.31202 -15.06316 -14.80194 -14.75222 -14.67292 -14.21562 -14.07010 -13.98305 -13.79973 -13.58370 -13.19171 -13.11853 -13.03610 -12.95978 -12.58604 -12.43538 -12.16266 -12.01361 -11.84617 -11.61455 -11.29505 -10.99178 -10.61311 -10.52648 -10.50010 -8.70745 -8.66090 -7.86726 -5.30553 -0.13606 0.36538 1.48099 1.50785 1.59166 1.69805 2.03810 2.05361 2.53154 2.95967 3.02077 3.29996 3.44078 3.70779 3.77244 3.90388 3.93539 4.05687 4.24715 4.38706 4.50361 4.64022 4.65184 4.70261 4.73012 4.83753 4.87331 4.98206 5.05440 5.08363 5.14365 5.20598 5.22274 5.38442 5.48052 5.53145 5.67636 5.76352 5.98462 6.41767 6.50295 6.60467 7.11033 7.17746 7.88920 8.38542 9.19915 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.043509 B = 0.003063 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.395927 B = 9139.352300 C = 9367.133618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.233 3.767 3 N -0.564 5.564 4 C 0.431 3.569 5 N -0.698 5.698 6 C 0.168 3.832 7 C -0.131 4.131 8 C 0.143 3.857 9 N -0.611 5.611 10 C -0.261 4.261 11 H 0.065 0.935 12 C -0.048 4.048 13 N -0.933 5.933 14 Si 0.961 3.039 15 H -0.286 1.286 16 H -0.293 1.293 17 H -0.272 1.272 18 C 0.180 3.820 19 C -0.132 4.132 20 C -0.251 4.251 21 C 0.028 3.972 22 C -0.174 4.174 23 C 0.296 3.704 24 N -0.474 5.474 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.408 0.592 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.054 0.946 34 H 0.250 0.750 35 H 0.005 0.995 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.151 0.849 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 -7.840 0.855 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.283 5.283 4 C 0.193 3.807 5 N -0.325 5.325 6 C 0.063 3.937 7 C -0.171 4.171 8 C 0.017 3.983 9 N -0.334 5.334 10 C -0.391 4.391 11 H 0.083 0.917 12 C -0.243 4.243 13 N -0.579 5.579 14 Si 0.790 3.210 15 H -0.213 1.213 16 H -0.220 1.220 17 H -0.197 1.197 18 C 0.053 3.947 19 C -0.172 4.172 20 C -0.276 4.276 21 C 0.001 3.999 22 C -0.183 4.183 23 C -0.018 4.018 24 N -0.151 5.151 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.244 0.756 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.023 0.977 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.169 0.831 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.811 -8.467 0.751 17.951 hybrid contribution 1.429 0.911 0.139 1.701 sum -14.382 -7.556 0.890 16.270 Atomic orbital electron populations 1.20900 0.86973 1.04296 1.04575 1.21315 0.97231 0.85598 0.86908 1.67166 1.07644 1.29415 1.24114 1.18771 0.88212 0.87139 0.86587 1.44907 1.06152 1.05057 1.76366 1.20909 0.77326 0.98833 0.96588 1.22329 0.96472 1.02000 0.96334 1.21026 0.92645 0.88483 0.96141 1.44340 1.51047 1.23057 1.15005 1.19464 1.12178 1.15767 0.91735 0.91750 1.25717 0.98393 1.03171 0.97029 1.70148 1.39318 1.39743 1.08665 0.85376 0.78447 0.79861 0.77352 1.21328 1.21983 1.19715 1.20539 0.89054 0.99695 0.85387 1.22265 0.97942 0.96316 1.00639 1.21302 1.02123 0.91107 1.13078 1.21278 0.91499 0.99162 0.87990 1.16518 0.93320 0.87200 1.21287 1.25360 0.92403 0.92141 0.91854 1.81273 1.09743 1.11835 1.12250 0.88456 0.88918 0.90448 0.75568 0.89537 0.92636 0.90204 0.95773 0.92735 0.94096 0.97685 0.92512 0.90735 0.92241 0.83094 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.78 71.24 0.70 -0.88 16 2 C 0.23 4.50 6.82 42.90 0.29 4.80 16 3 N -0.56 -12.58 10.30 -180.36 -1.86 -14.44 16 4 C 0.43 9.57 7.62 133.21 1.01 10.58 16 5 N -0.70 -15.74 5.23 -324.46 -1.70 -17.44 16 6 C 0.17 4.39 2.10 45.02 0.09 4.48 16 7 C -0.13 -3.68 5.55 30.67 0.17 -3.51 16 8 C 0.14 5.20 6.52 86.36 0.56 5.76 16 9 N -0.61 -28.07 2.99 -699.11 -2.09 -30.16 16 10 C -0.26 -13.60 9.58 84.03 0.81 -12.79 16 11 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 12 C -0.05 -2.54 4.92 84.86 0.42 -2.12 16 13 N -0.93 -52.69 11.20 21.65 0.24 -52.45 16 14 Si 0.96 43.20 29.59 68.60 2.03 45.23 16 15 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 C 0.18 7.77 5.30 86.36 0.46 8.23 16 19 C -0.13 -4.16 5.55 30.67 0.17 -3.99 16 20 C -0.25 -4.84 8.73 22.22 0.19 -4.64 16 21 C 0.03 0.46 9.85 22.47 0.22 0.68 16 22 C -0.17 -3.25 5.75 -21.19 -0.12 -3.37 16 23 C 0.30 6.15 13.82 88.33 1.22 7.37 16 24 N -0.47 -11.78 18.54 19.00 0.35 -11.43 16 25 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.08 1.06 7.08 -2.39 -0.02 1.05 16 28 H 0.41 8.80 8.72 -92.71 -0.81 8.00 16 29 H 0.09 2.21 6.44 -2.39 -0.02 2.19 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.89 7.62 -2.39 -0.02 1.87 16 32 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 34 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.06 2.87 6.06 -2.39 -0.01 2.85 16 37 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.15 2.72 6.02 -2.91 -0.02 2.70 16 40 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -61.39 332.15 3.43 -57.96 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.26 Total: 12.12 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.20 Total: 10.59 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -5.05 Total: -125.91 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -61.39 3.43 -57.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311897557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.171 kcal (2) G-P(sol) polarization free energy of solvation -61.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds