Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 N 1.46500 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00129 * 264.02603 * 4 3 2 6 6 H 1.08007 * 119.99990 * 188.71996 * 5 4 3 7 7 C 1.38811 * 119.99921 * 8.71860 * 5 4 3 8 8 N 1.31618 * 120.00284 * 24.65617 * 7 5 4 9 9 Si 1.86810 * 119.99793 * 204.65532 * 7 5 4 10 10 H 1.48503 * 109.46945 * 84.98305 * 9 7 5 11 11 H 1.48497 * 109.46894 * 204.98014 * 9 7 5 12 12 H 1.48498 * 109.46902 * 324.98146 * 9 7 5 13 13 C 1.46503 * 119.99995 * 84.02203 * 4 3 2 14 14 C 1.50694 * 109.47489 * 270.00439 * 13 4 3 15 15 C 1.35369 * 126.73471 * 95.31046 * 14 13 4 16 16 N 1.36116 * 106.05215 * 180.12827 * 15 14 13 17 17 C 1.40243 * 125.94115 * 179.84841 * 16 15 14 18 18 C 1.38819 * 120.06354 * 179.71326 * 17 16 15 19 19 C 1.38124 * 119.93426 * 179.97438 * 18 17 16 20 20 C 1.38271 * 120.06522 * 359.97438 * 19 18 17 21 21 C 1.38276 * 120.13399 * 0.02562 * 20 19 18 22 22 C 1.38127 * 120.06130 * 359.97438 * 21 20 19 23 23 N 1.28734 * 108.11208 * 359.58126 * 16 15 14 24 24 N 1.28597 * 110.23748 * 0.26755 * 23 16 15 25 25 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47372 * 300.00348 * 1 2 3 27 27 H 1.09007 * 109.46975 * 59.99902 * 1 2 3 28 28 H 1.09004 * 109.47143 * 240.00351 * 2 1 3 29 29 H 1.08999 * 109.46678 * 120.00154 * 2 1 3 30 30 H 1.09000 * 109.47326 * 60.00163 * 3 2 1 31 31 H 1.08999 * 109.47489 * 299.99658 * 3 2 1 32 32 H 0.96997 * 119.99963 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47193 * 149.99710 * 13 4 3 34 34 H 1.08998 * 109.46755 * 30.00375 * 13 4 3 35 35 H 1.08004 * 126.97010 * 359.97438 * 15 14 13 36 36 H 1.08001 * 120.03779 * 359.95808 * 18 17 16 37 37 H 1.08005 * 119.97031 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.93502 * 179.74729 * 20 19 18 39 39 H 1.07995 * 119.96979 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.03303 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5661 1.1803 6 1 5.2599 1.7077 1.1714 7 6 3.5066 1.5094 2.3877 8 7 2.3537 0.8790 2.4631 9 14 4.2245 2.3280 3.9057 10 1 3.8442 3.7634 3.9207 11 1 3.6955 1.6630 5.1236 12 1 5.7044 2.2082 3.8795 13 6 4.2380 1.3102 -1.2609 14 6 4.4892 -0.1482 -1.5454 15 6 3.7363 -0.9633 -2.3208 16 7 4.3405 -2.1824 -2.2830 17 6 3.9021 -3.3392 -2.9436 18 6 4.6189 -4.5220 -2.8245 19 6 4.1844 -5.6599 -3.4759 20 6 3.0363 -5.6218 -4.2455 21 6 2.3202 -4.4451 -4.3661 22 6 2.7498 -3.3040 -3.7171 23 7 5.3874 -2.0874 -1.5400 24 7 5.5036 -0.8898 -1.0861 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.8767 0.8397 3.3067 33 1 5.1904 1.8348 -1.1845 34 1 3.6492 1.7420 -2.0702 35 1 2.8372 -0.7002 -2.8582 36 1 5.5156 -4.5525 -2.2234 37 1 4.7414 -6.5806 -3.3833 38 1 2.7007 -6.5117 -4.7572 39 1 1.4241 -4.4182 -4.9683 40 1 2.1904 -2.3852 -3.8119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338921929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = 158.837382 kcal Electronic energy + Delta-G solvation = -22510.582092 eV Core-core repulsion = 19328.948207 eV Total energy + Delta-G solvation = -3181.633885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.86963 -39.31713 -36.34726 -34.33223 -32.16464 -31.88539 -31.32025 -29.98969 -29.67541 -26.13091 -25.47323 -24.04497 -23.15573 -21.86204 -21.13800 -20.27842 -19.83776 -18.17515 -16.74061 -16.36013 -15.96956 -15.22029 -15.03121 -14.86003 -14.15894 -13.76045 -13.67736 -13.60796 -13.24163 -13.10866 -12.92410 -12.24233 -11.99417 -11.66500 -11.40889 -11.34826 -11.06337 -10.94202 -10.65818 -10.58435 -10.44555 -10.22211 -10.09597 -9.86031 -9.74764 -9.30539 -9.27782 -8.67975 -8.43980 -8.24145 -6.90229 -5.71692 -3.02841 0.67572 1.07057 2.28797 2.61129 3.18898 3.46193 3.52557 3.54722 3.57835 4.45868 4.58241 4.60469 4.77537 4.90811 5.08772 5.09973 5.34974 5.42015 5.52017 5.56256 5.65104 5.74650 5.83988 6.05975 6.17704 6.18680 6.19830 6.22713 6.49483 6.51726 6.55245 6.62119 6.70571 6.80264 6.88696 7.15088 7.17226 7.27101 7.74297 7.82558 8.14070 8.38858 9.04290 9.28165 9.87997 10.31575 11.31678 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.004542 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.581533 B = 6163.105611 C = 6629.473232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.171 3.829 4 N -0.581 5.581 5 C -0.242 4.242 6 H 0.078 0.922 7 C -0.002 4.002 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.220 3.780 14 C 0.000 4.000 15 C -0.060 4.060 16 N -0.257 5.257 17 C 0.143 3.857 18 C -0.110 4.110 19 C -0.100 4.100 20 C -0.124 4.124 21 C -0.098 4.098 22 C -0.124 4.124 23 N -0.097 5.097 24 N -0.241 5.241 25 H 0.030 0.970 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.019 0.981 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.004 0.996 32 H 0.251 0.749 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.182 0.818 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -9.390 -14.997 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.300 5.300 5 C -0.371 4.371 6 H 0.096 0.904 7 C -0.199 4.199 8 N -0.542 5.542 9 Si 0.730 3.270 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.089 3.911 14 C -0.139 4.139 15 C -0.207 4.207 16 N -0.046 5.046 17 C 0.051 3.949 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.145 4.145 23 N -0.075 5.075 24 N -0.109 5.109 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.023 0.977 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.199 0.801 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.434 -10.016 -14.170 17.412 hybrid contribution -0.838 0.466 0.466 1.066 sum -2.272 -9.550 -13.704 16.858 Atomic orbital electron populations 1.21635 0.98688 0.99089 1.00063 1.22177 0.92662 1.00771 1.01367 1.20972 0.81579 0.94377 0.98507 1.44534 1.01854 1.81988 1.01614 1.19377 0.92673 1.41777 0.83273 0.90369 1.24734 0.97637 1.00233 0.97310 1.70157 1.17146 1.42051 1.24832 0.86316 0.78590 0.79570 0.82550 1.21598 1.22113 1.20609 1.19389 0.97152 0.84977 0.89535 1.23943 0.92248 1.02018 0.95679 1.23408 1.03828 0.84655 1.08777 1.44647 1.18922 1.07997 1.32993 1.17731 0.95914 0.84886 0.96356 1.21025 1.00688 0.90824 1.00445 1.21080 0.96585 0.97786 0.96439 1.21267 0.95503 0.98271 0.99273 1.21001 0.99867 0.91916 0.98914 1.20958 0.95238 1.00327 0.98010 1.78253 1.04673 1.16593 1.07944 1.75057 1.21718 0.96293 1.17783 0.95096 0.92945 0.95063 0.96185 0.88613 0.89065 0.97741 0.93917 0.91413 0.92116 0.80140 0.84121 0.84914 0.85363 0.84879 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 37.16 0.37 -2.23 16 2 C -0.13 -2.91 5.59 -26.73 -0.15 -3.06 16 3 C 0.17 3.96 4.92 -4.04 -0.02 3.94 16 4 N -0.58 -14.15 2.52 -174.61 -0.44 -14.59 16 5 C -0.24 -6.59 9.70 -15.06 -0.15 -6.74 16 6 H 0.08 2.16 7.93 -52.48 -0.42 1.75 16 7 C 0.00 -0.06 4.90 -17.43 -0.09 -0.14 16 8 N -0.90 -25.04 8.57 55.49 0.48 -24.56 16 9 Si 0.90 22.03 29.62 -169.99 -5.04 16.99 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.22 4.51 6.27 -5.19 -0.03 4.47 16 14 C 0.00 0.00 6.40 -82.77 -0.53 -0.53 16 15 C -0.06 -1.06 8.89 -16.67 -0.15 -1.20 16 16 N -0.26 -4.61 3.56 -10.47 -0.04 -4.64 16 17 C 0.14 2.07 6.68 -83.58 -0.56 1.51 16 18 C -0.11 -1.40 9.62 -39.41 -0.38 -1.78 16 19 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 20 C -0.12 -1.05 10.04 -39.56 -0.40 -1.44 16 21 C -0.10 -0.89 10.04 -39.61 -0.40 -1.28 16 22 C -0.12 -1.44 9.46 -39.41 -0.37 -1.81 16 23 N -0.10 -2.02 12.42 60.35 0.75 -1.28 16 24 N -0.24 -5.50 12.39 33.29 0.41 -5.08 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.42 5.45 -51.93 -0.28 0.13 16 29 H 0.10 2.59 6.31 -51.93 -0.33 2.26 16 30 H 0.09 2.38 5.86 -51.93 -0.30 2.07 16 31 H 0.00 0.09 7.98 -51.93 -0.41 -0.32 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 34 H 0.06 1.05 7.95 -51.93 -0.41 0.64 16 35 H 0.18 2.58 6.92 -52.48 -0.36 2.22 16 36 H 0.14 1.86 7.69 -52.49 -0.40 1.45 16 37 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.37 6.77 -52.49 -0.36 1.02 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -31.58 330.66 -7.51 -39.08 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.37 Total: 0.75 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.25 Total: -11.65 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 1.16 Total: -50.15 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.04 Total: 16.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.58 -7.51 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338921929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.921 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds