Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 N 1.46500 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00129 * 264.02603 * 4 3 2 6 6 H 1.08007 * 119.99990 * 188.71996 * 5 4 3 7 7 C 1.38811 * 119.99921 * 8.71860 * 5 4 3 8 8 N 1.31618 * 120.00284 * 24.65617 * 7 5 4 9 9 Si 1.86810 * 119.99793 * 204.65532 * 7 5 4 10 10 H 1.48503 * 109.46945 * 84.98305 * 9 7 5 11 11 H 1.48497 * 109.46894 * 204.98014 * 9 7 5 12 12 H 1.48498 * 109.46902 * 324.98146 * 9 7 5 13 13 C 1.46503 * 119.99995 * 84.02203 * 4 3 2 14 14 C 1.50694 * 109.47489 * 270.00439 * 13 4 3 15 15 C 1.35369 * 126.73471 * 95.31046 * 14 13 4 16 16 N 1.36116 * 106.05215 * 180.12827 * 15 14 13 17 17 C 1.40243 * 125.94115 * 179.84841 * 16 15 14 18 18 C 1.38819 * 120.06354 * 179.71326 * 17 16 15 19 19 C 1.38124 * 119.93426 * 179.97438 * 18 17 16 20 20 C 1.38271 * 120.06522 * 359.97438 * 19 18 17 21 21 C 1.38276 * 120.13399 * 0.02562 * 20 19 18 22 22 C 1.38127 * 120.06130 * 359.97438 * 21 20 19 23 23 N 1.28734 * 108.11208 * 359.58126 * 16 15 14 24 24 N 1.28597 * 110.23748 * 0.26755 * 23 16 15 25 25 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47372 * 300.00348 * 1 2 3 27 27 H 1.09007 * 109.46975 * 59.99902 * 1 2 3 28 28 H 1.09004 * 109.47143 * 240.00351 * 2 1 3 29 29 H 1.08999 * 109.46678 * 120.00154 * 2 1 3 30 30 H 1.09000 * 109.47326 * 60.00163 * 3 2 1 31 31 H 1.08999 * 109.47489 * 299.99658 * 3 2 1 32 32 H 0.96997 * 119.99963 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47193 * 149.99710 * 13 4 3 34 34 H 1.08998 * 109.46755 * 30.00375 * 13 4 3 35 35 H 1.08004 * 126.97010 * 359.97438 * 15 14 13 36 36 H 1.08001 * 120.03779 * 359.95808 * 18 17 16 37 37 H 1.08005 * 119.97031 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.93502 * 179.74729 * 20 19 18 39 39 H 1.07995 * 119.96979 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.03303 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5661 1.1803 6 1 5.2599 1.7077 1.1714 7 6 3.5066 1.5094 2.3877 8 7 2.3537 0.8790 2.4631 9 14 4.2245 2.3280 3.9057 10 1 3.8442 3.7634 3.9207 11 1 3.6955 1.6630 5.1236 12 1 5.7044 2.2082 3.8795 13 6 4.2380 1.3102 -1.2609 14 6 4.4892 -0.1482 -1.5454 15 6 3.7363 -0.9633 -2.3208 16 7 4.3405 -2.1824 -2.2830 17 6 3.9021 -3.3392 -2.9436 18 6 4.6189 -4.5220 -2.8245 19 6 4.1844 -5.6599 -3.4759 20 6 3.0363 -5.6218 -4.2455 21 6 2.3202 -4.4451 -4.3661 22 6 2.7498 -3.3040 -3.7171 23 7 5.3874 -2.0874 -1.5400 24 7 5.5036 -0.8898 -1.0861 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.8767 0.8397 3.3067 33 1 5.1904 1.8348 -1.1845 34 1 3.6492 1.7420 -2.0702 35 1 2.8372 -0.7002 -2.8582 36 1 5.5156 -4.5525 -2.2234 37 1 4.7414 -6.5806 -3.3833 38 1 2.7007 -6.5117 -4.7572 39 1 1.4241 -4.4182 -4.9683 40 1 2.1904 -2.3852 -3.8119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338921929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = 140.708121 kcal Electronic energy + Delta-G solvation = -22511.368236 eV Core-core repulsion = 19328.948207 eV Total energy + Delta-G solvation = -3182.420028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.30294 -40.19739 -38.13784 -35.59923 -33.77105 -33.71876 -32.35005 -31.50690 -30.75035 -27.74520 -27.33717 -25.21582 -24.36882 -23.38117 -22.34587 -21.81823 -21.40136 -19.33761 -18.68458 -17.45191 -17.21911 -16.86716 -16.26574 -15.92222 -15.65119 -15.35754 -15.26246 -14.80213 -14.66708 -14.47002 -14.01586 -13.79882 -13.44879 -13.12193 -12.86659 -12.77713 -12.61793 -12.48542 -12.22749 -12.09588 -11.98717 -11.85161 -11.80069 -11.67000 -11.54437 -11.12689 -10.36673 -10.07799 -10.02651 -9.53647 -8.83043 -7.77352 -5.09059 -0.33650 0.28192 1.07794 1.40377 1.48170 1.49215 1.55908 1.64951 2.58394 2.72841 3.26994 3.45630 3.61637 3.81520 3.84479 4.06449 4.10895 4.22430 4.32310 4.36947 4.50375 4.55069 4.66564 4.67756 4.88110 4.91996 4.97932 5.00191 5.04797 5.19100 5.21873 5.32769 5.40222 5.46406 5.48750 5.56078 5.68388 5.68961 5.91307 6.00599 6.25114 6.39928 7.25704 7.55532 7.95188 8.32241 9.22650 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.004542 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.581533 B = 6163.105611 C = 6629.473232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 C 0.175 3.825 4 N -0.596 5.596 5 C -0.249 4.249 6 H 0.063 0.937 7 C -0.047 4.047 8 N -0.910 5.910 9 Si 0.951 3.049 10 H -0.283 1.283 11 H -0.300 1.300 12 H -0.283 1.283 13 C 0.220 3.780 14 C -0.023 4.023 15 C -0.042 4.042 16 N -0.244 5.244 17 C 0.092 3.908 18 C -0.128 4.128 19 C -0.100 4.100 20 C -0.107 4.107 21 C -0.093 4.093 22 C -0.125 4.125 23 N -0.125 5.125 24 N -0.293 5.293 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.243 0.757 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.220 0.780 36 H 0.122 0.878 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -10.880 -18.047 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C 0.050 3.950 4 N -0.316 5.316 5 C -0.379 4.379 6 H 0.081 0.919 7 C -0.242 4.242 8 N -0.557 5.557 9 Si 0.781 3.219 10 H -0.210 1.210 11 H -0.228 1.228 12 H -0.209 1.209 13 C 0.091 3.909 14 C -0.164 4.164 15 C -0.190 4.190 16 N -0.032 5.032 17 C 0.002 3.998 18 C -0.148 4.148 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.146 4.146 23 N -0.102 5.102 24 N -0.159 5.159 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.237 0.763 36 H 0.140 0.860 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.612 -11.542 -17.252 21.069 hybrid contribution -0.174 0.728 1.195 1.410 sum -3.786 -10.814 -16.056 19.725 Atomic orbital electron populations 1.21526 0.96035 1.00154 1.00796 1.21944 0.94915 0.99653 0.99338 1.20870 0.81063 0.94807 0.98275 1.44592 1.02465 1.82686 1.01844 1.19431 0.92219 1.41416 0.84874 0.91912 1.25288 0.98451 1.01184 0.99313 1.70340 1.17936 1.42862 1.24598 0.85512 0.77652 0.78863 0.79850 1.20958 1.22754 1.20870 1.19486 0.97095 0.85233 0.89048 1.23876 0.93015 1.02132 0.97342 1.23842 1.03821 0.83987 1.07398 1.44889 1.17704 1.09148 1.31503 1.18244 0.98337 0.84272 0.98979 1.21124 1.00499 0.91864 1.01319 1.21430 0.97292 0.97459 0.95665 1.21798 0.93944 0.99480 0.97339 1.21487 1.00712 0.90935 0.98034 1.21259 0.94014 1.02035 0.97246 1.78143 1.06458 1.16096 1.09507 1.74978 1.23763 0.97438 1.19744 0.93869 0.94543 0.91919 0.94978 0.93761 0.92372 0.94587 0.94730 0.92322 0.88291 0.76329 0.86029 0.82340 0.81480 0.81246 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.91 71.98 0.71 -3.85 16 2 C -0.12 -5.23 5.59 30.59 0.17 -5.06 16 3 C 0.17 8.00 4.92 86.38 0.42 8.43 16 4 N -0.60 -29.29 2.52 -706.35 -1.78 -31.07 16 5 C -0.25 -14.03 9.70 84.03 0.82 -13.21 16 6 H 0.06 3.64 7.93 -2.91 -0.02 3.61 16 7 C -0.05 -2.68 4.90 84.86 0.42 -2.26 16 8 N -0.91 -52.57 8.57 21.65 0.19 -52.39 16 9 Si 0.95 46.76 29.62 68.60 2.03 48.80 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 12 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 13 C 0.22 8.99 6.27 85.63 0.54 9.52 16 14 C -0.02 -0.97 6.40 41.60 0.27 -0.70 16 15 C -0.04 -1.44 8.89 83.37 0.74 -0.70 16 16 N -0.24 -8.74 3.56 -187.05 -0.67 -9.41 16 17 C 0.09 2.57 6.68 38.07 0.25 2.82 16 18 C -0.13 -3.20 9.62 22.38 0.22 -2.98 16 19 C -0.10 -1.63 10.04 22.25 0.22 -1.40 16 20 C -0.11 -1.28 10.04 22.29 0.22 -1.06 16 21 C -0.09 -1.23 10.04 22.25 0.22 -1.00 16 22 C -0.12 -2.48 9.46 22.38 0.21 -2.27 16 23 N -0.13 -5.43 12.42 37.02 0.46 -4.97 16 24 N -0.29 -13.96 12.39 -48.59 -0.60 -14.57 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.03 1.29 5.45 -2.39 -0.01 1.28 16 29 H 0.04 2.43 6.31 -2.39 -0.02 2.42 16 30 H 0.06 3.07 5.86 -2.39 -0.01 3.05 16 31 H 0.04 1.41 7.98 -2.39 -0.02 1.39 16 32 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.06 2.44 8.03 -2.39 -0.02 2.42 16 34 H 0.10 3.20 7.95 -2.39 -0.02 3.18 16 35 H 0.22 5.48 6.92 -2.91 -0.02 5.46 16 36 H 0.12 3.40 7.69 -2.91 -0.02 3.38 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.15 2.42 6.77 -2.91 -0.02 2.40 16 Total: -1.00 -73.87 330.66 6.10 -67.77 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.04 Total: 9.56 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 5.44 Total: -13.73 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -2.41 Total: -112.40 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.80 kcal Total: -73.87 6.10 -67.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338921929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.480 kcal (2) G-P(sol) polarization free energy of solvation -73.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds