Wall clock time and date at job start Tue Mar 31 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46892 * 109.47248 * 2 1 4 4 C 1.46905 * 110.99642 * 287.97522 * 3 2 1 5 5 C 1.50707 * 109.46950 * 160.36766 * 4 3 2 6 6 H 1.08003 * 119.99580 * 4.90084 * 5 4 3 7 7 C 1.37871 * 119.99887 * 184.90110 * 5 4 3 8 8 N 1.31518 * 119.99816 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00159 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47173 * 90.00073 * 9 7 5 11 11 H 1.48500 * 109.47351 * 210.00020 * 9 7 5 12 12 H 1.48494 * 109.47348 * 329.99959 * 9 7 5 13 13 C 1.46900 * 111.00055 * 164.02304 * 3 2 1 14 14 C 1.50690 * 109.47346 * 293.95196 * 13 3 2 15 15 C 1.35375 * 126.73266 * 95.30843 * 14 13 3 16 16 N 1.36113 * 106.05159 * 180.12836 * 15 14 13 17 17 C 1.40249 * 125.94605 * 179.84867 * 16 15 14 18 18 C 1.38817 * 120.06943 * 179.71287 * 17 16 15 19 19 C 1.38124 * 119.93489 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.06665 * 359.97438 * 19 18 17 21 21 C 1.38281 * 120.12847 * 0.02562 * 20 19 18 22 22 C 1.38119 * 120.06768 * 0.02562 * 21 20 19 23 23 N 1.28735 * 108.11386 * 359.58455 * 16 15 14 24 24 N 1.28597 * 110.23462 * 0.26660 * 23 16 15 25 25 H 1.09001 * 109.47315 * 179.35937 * 1 2 3 26 26 H 1.09003 * 109.47058 * 299.35802 * 1 2 3 27 27 H 1.08996 * 109.47129 * 59.35527 * 1 2 3 28 28 H 1.09003 * 109.47036 * 239.99396 * 2 1 3 29 29 H 1.09005 * 109.46655 * 120.00301 * 2 1 3 30 30 H 1.08999 * 109.47005 * 280.36688 * 4 3 2 31 31 H 1.08997 * 109.47137 * 40.36673 * 4 3 2 32 32 H 0.97007 * 119.99647 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47128 * 173.94716 * 13 3 2 34 34 H 1.09001 * 109.46804 * 53.95329 * 13 3 2 35 35 H 1.08003 * 126.97244 * 0.02562 * 15 14 13 36 36 H 1.08001 * 120.02839 * 359.96106 * 18 17 16 37 37 H 1.08001 * 119.96574 * 180.02562 * 19 18 17 38 38 H 1.07998 * 119.93810 * 179.74384 * 20 19 18 39 39 H 1.08005 * 119.96523 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.03334 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7961 2.0223 -1.3046 5 6 1.8476 3.5202 -1.1472 6 1 2.1063 3.9543 -0.1927 7 6 1.5643 4.3363 -2.2217 8 7 1.6097 5.6436 -2.0845 9 14 1.1161 3.5855 -3.8723 10 1 -0.3548 3.3954 -3.9466 11 1 1.5537 4.4923 -4.9639 12 1 1.7930 2.2720 -4.0188 13 6 3.4382 1.4417 0.3775 14 6 3.5942 1.0064 1.8117 15 6 3.9045 -0.2357 2.2516 16 7 3.9332 -0.1576 3.6102 17 6 4.2114 -1.2138 4.4899 18 6 4.2137 -0.9950 5.8607 19 6 4.4877 -2.0373 6.7246 20 6 4.7589 -3.2979 6.2253 21 6 4.7573 -3.5188 4.8602 22 6 4.4851 -2.4802 3.9914 23 7 3.6659 1.0559 3.9470 24 7 3.4594 1.7730 2.8997 25 1 -0.3634 -1.0276 -0.0115 26 1 -0.3633 0.5038 0.8957 27 1 -0.3633 0.5238 -0.8841 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.5705 1.7034 -2.0022 31 1 0.8187 1.7306 -1.6887 32 1 1.4100 6.2178 -2.8404 33 1 3.8033 2.4627 0.2659 34 1 4.0129 0.7778 -0.2683 35 1 4.0898 -1.1114 1.6472 36 1 4.0018 -0.0106 6.2513 37 1 4.4892 -1.8678 7.7912 38 1 4.9768 -4.1104 6.9025 39 1 4.9691 -4.5046 4.4731 40 1 4.4845 -2.6533 2.9254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349842145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:58 Heat of formation + Delta-G solvation = 142.998104 kcal Electronic energy + Delta-G solvation = -21754.474597 eV Core-core repulsion = 18572.153870 eV Total energy + Delta-G solvation = -3182.320727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.31943 -39.58112 -37.23042 -34.66120 -32.57945 -32.01466 -31.32113 -30.20568 -29.93253 -27.73297 -25.15170 -24.38464 -23.14141 -22.38775 -21.43343 -20.85510 -19.75536 -18.41807 -16.82706 -16.59873 -16.44925 -15.49891 -15.32064 -14.90121 -14.83473 -14.34205 -13.96167 -13.85488 -13.62515 -13.40567 -13.20544 -12.42898 -12.27569 -12.06018 -11.93298 -11.63621 -11.39787 -11.28670 -11.17499 -10.91224 -10.80843 -10.57386 -10.41488 -10.10765 -9.84470 -9.50611 -9.32548 -9.10202 -8.75140 -8.49872 -7.37769 -5.97753 -3.94561 0.39115 0.84581 1.91819 2.23014 2.72281 3.31311 3.32843 3.39017 3.39497 4.17503 4.33257 4.46541 4.47798 4.64337 4.75799 4.85359 4.86921 5.02090 5.15781 5.25837 5.33473 5.37402 5.52463 5.53950 5.71140 5.83104 5.90977 5.95733 5.98866 6.10508 6.18106 6.21127 6.28344 6.41330 6.55290 6.69891 6.78753 6.84934 6.91787 7.66277 7.91533 8.01527 8.63949 8.72364 9.15929 9.63468 11.15613 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.033196 B = 0.003376 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.282353 B = 8291.567270 C = 8736.795291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.519 5.519 4 C 0.163 3.837 5 C -0.506 4.506 6 H 0.084 0.916 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.141 3.859 14 C 0.021 3.979 15 C -0.058 4.058 16 N -0.253 5.253 17 C 0.135 3.865 18 C -0.105 4.105 19 C -0.099 4.099 20 C -0.119 4.119 21 C -0.099 4.099 22 C -0.123 4.123 23 N -0.086 5.086 24 N -0.230 5.230 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.023 0.977 29 H 0.058 0.942 30 H -0.010 1.010 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.188 0.812 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -22.004 13.330 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.244 5.244 4 C 0.038 3.962 5 C -0.544 4.544 6 H 0.102 0.898 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.194 1.194 13 C 0.011 3.989 14 C -0.116 4.116 15 C -0.206 4.206 16 N -0.041 5.041 17 C 0.043 3.957 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.138 4.138 21 C -0.117 4.117 22 C -0.144 4.144 23 N -0.064 5.064 24 N -0.097 5.097 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.007 0.993 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.205 0.795 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.484 -20.508 14.679 26.040 hybrid contribution 0.264 -1.586 -2.400 2.889 sum 6.748 -22.094 12.280 26.162 Atomic orbital electron populations 1.21743 0.95384 0.99991 1.03030 1.22091 0.96280 0.90833 0.99055 1.61903 1.15031 1.14258 1.33202 1.20229 0.95494 0.96122 0.84392 1.21081 1.46345 0.88092 0.98908 0.89796 1.24896 0.95331 0.94707 0.98390 1.69906 1.49815 1.02831 1.31284 0.86919 0.79167 0.79411 0.84558 1.20237 1.21257 1.19372 1.20296 0.90486 1.03026 0.85066 1.22191 1.02224 0.89652 0.97508 1.23490 1.11607 1.01975 0.83517 1.44653 1.45608 1.08326 1.05480 1.17723 1.02945 0.85699 0.89312 1.21053 0.99767 1.01235 0.90485 1.21121 0.98365 0.92210 1.00096 1.21328 0.99518 0.97382 0.95553 1.21028 0.98906 0.98657 0.93131 1.20953 1.01623 0.90720 1.01078 1.78372 1.18033 0.87550 1.22449 1.75175 1.14390 1.25076 0.95101 0.93538 0.92178 0.92192 0.95856 0.92334 0.99262 0.95274 0.92748 0.87370 0.93990 0.79517 0.83907 0.84675 0.85155 0.84715 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.99 37.16 0.37 -2.01 16 2 C 0.05 0.79 5.55 -3.83 -0.02 0.77 16 3 N -0.52 -10.96 4.37 -237.52 -1.04 -12.00 16 4 C 0.16 3.93 3.65 -4.97 -0.02 3.91 16 5 C -0.51 -14.52 9.17 -34.44 -0.32 -14.84 16 6 H 0.08 2.68 7.89 -52.48 -0.41 2.27 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 9 Si 0.87 21.48 27.37 -169.99 -4.65 16.83 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.31 6.69 56.52 0.38 -5.94 16 13 C 0.14 2.69 5.35 -4.98 -0.03 2.67 16 14 C 0.02 0.37 6.02 -82.77 -0.50 -0.13 16 15 C -0.06 -0.82 9.49 -16.67 -0.16 -0.98 16 16 N -0.25 -3.67 3.56 -10.47 -0.04 -3.70 16 17 C 0.13 1.52 6.68 -83.57 -0.56 0.97 16 18 C -0.11 -1.05 9.62 -39.41 -0.38 -1.43 16 19 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 20 C -0.12 -0.72 10.04 -39.55 -0.40 -1.12 16 21 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 22 C -0.12 -1.04 9.46 -39.41 -0.37 -1.41 16 23 N -0.09 -1.53 12.42 60.35 0.75 -0.78 16 24 N -0.23 -4.64 12.39 33.29 0.41 -4.22 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.07 6.52 -51.93 -0.34 0.73 16 28 H 0.02 0.37 8.05 -51.93 -0.42 -0.04 16 29 H 0.06 0.91 5.86 -51.93 -0.30 0.60 16 30 H -0.01 -0.24 7.40 -51.93 -0.38 -0.63 16 31 H 0.03 0.70 5.40 -51.93 -0.28 0.42 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.11 2.35 7.32 -51.93 -0.38 1.97 16 34 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 35 H 0.19 1.85 7.11 -52.48 -0.37 1.48 16 36 H 0.14 1.49 7.69 -52.49 -0.40 1.09 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 40 H 0.13 0.91 6.77 -52.49 -0.36 0.56 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -34.20 332.43 -7.40 -41.60 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.35 Total: -1.70 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -3.27 Total: -13.85 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.86 Total: -47.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.65 Total: 16.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.20 -7.40 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349842145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.600 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds