Wall clock time and date at job start Tue Mar 31 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46892 * 109.47248 * 2 1 4 4 C 1.46905 * 110.99642 * 287.97522 * 3 2 1 5 5 C 1.50707 * 109.46950 * 160.36766 * 4 3 2 6 6 H 1.08003 * 119.99580 * 4.90084 * 5 4 3 7 7 C 1.37871 * 119.99887 * 184.90110 * 5 4 3 8 8 N 1.31518 * 119.99816 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00159 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47173 * 90.00073 * 9 7 5 11 11 H 1.48500 * 109.47351 * 210.00020 * 9 7 5 12 12 H 1.48494 * 109.47348 * 329.99959 * 9 7 5 13 13 C 1.46900 * 111.00055 * 164.02304 * 3 2 1 14 14 C 1.50690 * 109.47346 * 293.95196 * 13 3 2 15 15 C 1.35375 * 126.73266 * 95.30843 * 14 13 3 16 16 N 1.36113 * 106.05159 * 180.12836 * 15 14 13 17 17 C 1.40249 * 125.94605 * 179.84867 * 16 15 14 18 18 C 1.38817 * 120.06943 * 179.71287 * 17 16 15 19 19 C 1.38124 * 119.93489 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.06665 * 359.97438 * 19 18 17 21 21 C 1.38281 * 120.12847 * 0.02562 * 20 19 18 22 22 C 1.38119 * 120.06768 * 0.02562 * 21 20 19 23 23 N 1.28735 * 108.11386 * 359.58455 * 16 15 14 24 24 N 1.28597 * 110.23462 * 0.26660 * 23 16 15 25 25 H 1.09001 * 109.47315 * 179.35937 * 1 2 3 26 26 H 1.09003 * 109.47058 * 299.35802 * 1 2 3 27 27 H 1.08996 * 109.47129 * 59.35527 * 1 2 3 28 28 H 1.09003 * 109.47036 * 239.99396 * 2 1 3 29 29 H 1.09005 * 109.46655 * 120.00301 * 2 1 3 30 30 H 1.08999 * 109.47005 * 280.36688 * 4 3 2 31 31 H 1.08997 * 109.47137 * 40.36673 * 4 3 2 32 32 H 0.97007 * 119.99647 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47128 * 173.94716 * 13 3 2 34 34 H 1.09001 * 109.46804 * 53.95329 * 13 3 2 35 35 H 1.08003 * 126.97244 * 0.02562 * 15 14 13 36 36 H 1.08001 * 120.02839 * 359.96106 * 18 17 16 37 37 H 1.08001 * 119.96574 * 180.02562 * 19 18 17 38 38 H 1.07998 * 119.93810 * 179.74384 * 20 19 18 39 39 H 1.08005 * 119.96523 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.03334 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7961 2.0223 -1.3046 5 6 1.8476 3.5202 -1.1472 6 1 2.1063 3.9543 -0.1927 7 6 1.5643 4.3363 -2.2217 8 7 1.6097 5.6436 -2.0845 9 14 1.1161 3.5855 -3.8723 10 1 -0.3548 3.3954 -3.9466 11 1 1.5537 4.4923 -4.9639 12 1 1.7930 2.2720 -4.0188 13 6 3.4382 1.4417 0.3775 14 6 3.5942 1.0064 1.8117 15 6 3.9045 -0.2357 2.2516 16 7 3.9332 -0.1576 3.6102 17 6 4.2114 -1.2138 4.4899 18 6 4.2137 -0.9950 5.8607 19 6 4.4877 -2.0373 6.7246 20 6 4.7589 -3.2979 6.2253 21 6 4.7573 -3.5188 4.8602 22 6 4.4851 -2.4802 3.9914 23 7 3.6659 1.0559 3.9470 24 7 3.4594 1.7730 2.8997 25 1 -0.3634 -1.0276 -0.0115 26 1 -0.3633 0.5038 0.8957 27 1 -0.3633 0.5238 -0.8841 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.5705 1.7034 -2.0022 31 1 0.8187 1.7306 -1.6887 32 1 1.4100 6.2178 -2.8404 33 1 3.8033 2.4627 0.2659 34 1 4.0129 0.7778 -0.2683 35 1 4.0898 -1.1114 1.6472 36 1 4.0018 -0.0106 6.2513 37 1 4.4892 -1.8678 7.7912 38 1 4.9768 -4.1104 6.9025 39 1 4.9691 -4.5046 4.4731 40 1 4.4845 -2.6533 2.9254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349842145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:58 Heat of formation + Delta-G solvation = 119.005536 kcal Electronic energy + Delta-G solvation = -21755.514993 eV Core-core repulsion = 18572.153870 eV Total energy + Delta-G solvation = -3183.361123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.50992 -40.24310 -38.77883 -35.68699 -34.70766 -33.19195 -32.10782 -31.63429 -30.83944 -29.48462 -26.64369 -25.34226 -24.12462 -23.93980 -22.41370 -22.10356 -21.13891 -19.37848 -18.95157 -17.68581 -17.24891 -16.67854 -16.53354 -16.29987 -15.83069 -15.70489 -15.23165 -15.10186 -14.67278 -14.47668 -14.46762 -14.03783 -13.66246 -13.45757 -13.01514 -12.93205 -12.68431 -12.53780 -12.45674 -12.21938 -12.09947 -12.02669 -11.84286 -11.79316 -11.55039 -11.45247 -10.73201 -10.35881 -10.07735 -9.59839 -8.95417 -8.22872 -6.26299 -0.40698 0.28052 0.97513 1.26722 1.36746 1.38149 1.40616 1.50505 2.38398 2.71404 3.08337 3.17038 3.35895 3.54033 3.77867 3.89704 3.97842 4.15482 4.18899 4.22490 4.34658 4.37060 4.46906 4.58446 4.62535 4.69049 4.77036 4.90151 4.93690 4.97782 5.01248 5.08074 5.18247 5.31103 5.33876 5.36796 5.45781 5.61007 5.62227 5.94535 6.04462 6.39624 6.71465 6.81465 7.36505 7.39839 8.94919 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.033196 B = 0.003376 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.282353 B = 8291.567270 C = 8736.795291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 N -0.547 5.547 4 C 0.176 3.824 5 C -0.514 4.514 6 H 0.027 0.973 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.242 1.242 13 C 0.149 3.851 14 C -0.007 4.007 15 C -0.030 4.030 16 N -0.239 5.239 17 C 0.088 3.912 18 C -0.124 4.124 19 C -0.102 4.102 20 C -0.105 4.105 21 C -0.095 4.095 22 C -0.119 4.119 23 N -0.114 5.114 24 N -0.290 5.290 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.077 0.923 30 H -0.001 1.001 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.494 -27.714 12.707 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 N -0.273 5.273 4 C 0.049 3.951 5 C -0.552 4.552 6 H 0.045 0.955 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.165 1.165 13 C 0.019 3.981 14 C -0.145 4.145 15 C -0.179 4.179 16 N -0.026 5.026 17 C -0.002 4.002 18 C -0.144 4.144 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.140 4.140 23 N -0.091 5.091 24 N -0.156 5.156 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.017 0.983 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.253 0.747 36 H 0.141 0.859 37 H 0.174 0.826 38 H 0.183 0.817 39 H 0.188 0.812 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.003 -26.244 14.119 30.613 hybrid contribution 0.187 0.052 -1.941 1.951 sum 7.191 -26.191 12.178 29.766 Atomic orbital electron populations 1.21754 0.95183 1.01889 1.01181 1.22190 0.96413 0.88520 1.00970 1.61710 1.16718 1.17271 1.31580 1.19942 0.95941 0.92899 0.86309 1.21314 1.45838 0.91306 0.96743 0.95512 1.25942 0.95119 0.94992 1.03367 1.70098 1.51568 1.04892 1.32940 0.85648 0.79366 0.79410 0.78075 1.19184 1.20945 1.16545 1.20097 0.89787 1.01296 0.86883 1.22073 1.04780 0.91238 0.96402 1.23981 1.08633 1.01763 0.83482 1.44918 1.43335 1.08067 1.06304 1.18201 1.06568 0.86014 0.89389 1.21133 1.00909 1.01513 0.90875 1.21422 0.97676 0.92055 1.00861 1.21816 0.96799 0.97468 0.96272 1.21501 0.97303 0.99472 0.93014 1.21288 1.00447 0.89589 1.02626 1.78271 1.19760 0.89079 1.21998 1.75101 1.16758 1.27274 0.96499 0.89732 0.94299 0.93742 0.93488 0.90474 0.98316 0.94552 0.92583 0.91953 0.90675 0.74695 0.85901 0.82558 0.81740 0.81229 0.82807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.99 71.98 0.72 -3.72 16 2 C 0.05 1.48 5.55 86.31 0.48 1.96 16 3 N -0.55 -23.27 4.37 -905.36 -3.96 -27.23 16 4 C 0.18 8.45 3.65 85.56 0.31 8.76 16 5 C -0.51 -31.00 9.17 25.60 0.23 -30.77 16 6 H 0.03 1.86 7.89 -2.91 -0.02 1.84 16 7 C 0.00 0.13 5.47 84.65 0.46 0.59 16 8 N -0.95 -62.17 13.96 21.45 0.30 -61.87 16 9 Si 0.95 44.50 27.37 68.60 1.88 46.38 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.24 -10.21 6.69 99.48 0.67 -9.54 16 13 C 0.15 5.82 5.35 85.55 0.46 6.28 16 14 C -0.01 -0.24 6.02 41.60 0.25 0.01 16 15 C -0.03 -0.79 9.49 83.37 0.79 0.01 16 16 N -0.24 -6.86 3.56 -187.04 -0.67 -7.52 16 17 C 0.09 1.88 6.68 38.07 0.25 2.13 16 18 C -0.12 -2.44 9.62 22.38 0.22 -2.22 16 19 C -0.10 -1.20 10.04 22.25 0.22 -0.98 16 20 C -0.11 -0.79 10.04 22.29 0.22 -0.57 16 21 C -0.09 -0.74 10.04 22.25 0.22 -0.51 16 22 C -0.12 -1.56 9.46 22.38 0.21 -1.35 16 23 N -0.11 -4.26 12.42 37.02 0.46 -3.80 16 24 N -0.29 -12.54 12.39 -48.59 -0.60 -13.14 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.50 6.52 -2.39 -0.02 1.49 16 28 H 0.05 1.30 8.05 -2.39 -0.02 1.28 16 29 H 0.08 2.15 5.86 -2.38 -0.01 2.14 16 30 H 0.00 -0.04 7.40 -2.39 -0.02 -0.05 16 31 H 0.04 1.70 5.40 -2.39 -0.01 1.69 16 32 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 33 H 0.06 2.95 7.32 -2.39 -0.02 2.93 16 34 H 0.08 2.36 8.12 -2.39 -0.02 2.34 16 35 H 0.24 3.54 7.11 -2.91 -0.02 3.52 16 36 H 0.12 2.80 7.69 -2.91 -0.02 2.77 16 37 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.17 0.17 8.06 -2.91 -0.02 0.14 16 39 H 0.17 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.15 1.31 6.77 -2.91 -0.02 1.29 16 Total: -1.00 -83.04 332.43 3.47 -79.57 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.00 Total: 8.00 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 5.06 Total: -20.38 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -4.47 Total: -113.57 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -83.04 3.47 -79.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349842145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.575 kcal (2) G-P(sol) polarization free energy of solvation -83.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds