Wall clock time and date at job start Tue Mar 31 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47392 * 2 1 4 4 C 1.50704 * 109.47248 * 239.99229 * 2 1 3 5 5 H 1.07994 * 120.00404 * 240.00395 * 4 2 1 6 6 C 1.37874 * 119.99516 * 60.00430 * 4 2 1 7 7 N 1.31515 * 120.00238 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00021 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47160 * 89.99683 * 8 6 4 10 10 H 1.48491 * 109.47758 * 210.00180 * 8 6 4 11 11 H 1.48500 * 109.46944 * 330.00323 * 8 6 4 12 12 N 1.46907 * 109.46665 * 119.99828 * 2 1 3 13 13 C 1.46899 * 110.99587 * 176.04451 * 12 2 1 14 14 C 1.46900 * 110.99595 * 299.99869 * 12 2 1 15 15 C 1.50704 * 109.46712 * 170.00511 * 14 12 2 16 16 C 1.35369 * 126.73105 * 95.31096 * 15 14 12 17 17 N 1.36116 * 106.04609 * 180.12205 * 16 15 14 18 18 C 1.40254 * 125.94381 * 179.84825 * 17 16 15 19 19 C 1.38817 * 120.06733 * 179.72049 * 18 17 16 20 20 C 1.38120 * 119.93447 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.06636 * 359.97353 * 20 19 18 22 22 C 1.38280 * 120.12709 * 0.02562 * 21 20 19 23 23 C 1.38128 * 120.06481 * 359.97438 * 22 21 20 24 24 N 1.28733 * 108.12004 * 359.58477 * 17 16 15 25 25 N 1.28610 * 110.22744 * 0.26647 * 24 17 16 26 26 H 1.08994 * 109.47112 * 300.00729 * 1 2 3 27 27 H 1.09007 * 109.46353 * 60.00383 * 1 2 3 28 28 H 1.08993 * 109.47078 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99806 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46722 * 183.94948 * 13 12 2 31 31 H 1.08992 * 109.47535 * 303.95062 * 13 12 2 32 32 H 1.09007 * 109.47350 * 63.95622 * 13 12 2 33 33 H 1.08994 * 109.47328 * 50.00602 * 14 12 2 34 34 H 1.08998 * 109.46987 * 289.99948 * 14 12 2 35 35 H 1.07997 * 126.97969 * 359.97438 * 16 15 14 36 36 H 1.08000 * 120.03570 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.97110 * 179.97438 * 20 19 18 38 38 H 1.07994 * 119.93476 * 179.74806 * 21 20 19 39 39 H 1.07996 * 119.96164 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.02447 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6994 -0.2396 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4875 -0.1407 -5.1120 11 1 3.6309 -1.7570 -3.7117 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5485 -0.0262 2.4211 15 6 1.8578 -0.8909 3.6160 16 6 2.9412 -0.7999 4.4225 17 7 2.7974 -1.7785 5.3576 18 6 3.6920 -2.0581 6.4009 19 6 3.4205 -3.0862 7.2932 20 6 4.3036 -3.3595 8.3194 21 6 5.4577 -2.6105 8.4581 22 6 5.7309 -1.5857 7.5708 23 6 4.8514 -1.3078 6.5426 24 7 1.6947 -2.3993 5.1211 25 7 1.1124 -1.8949 4.0913 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 0.7092 1.1611 -3.4845 30 1 3.8163 -1.3722 2.0502 31 1 3.8069 -1.2916 0.2721 32 1 3.9192 0.2043 1.2301 33 1 0.4721 0.1325 2.3563 34 1 2.0518 0.9347 2.5280 35 1 3.7556 -0.0955 4.3394 36 1 2.5195 -3.6719 7.1852 37 1 4.0927 -4.1590 9.0142 38 1 6.1448 -2.8233 9.2637 39 1 6.6332 -1.0027 7.6814 40 1 5.0656 -0.5076 5.8497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353403894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:46 Heat of formation + Delta-G solvation = 125.317603 kcal Electronic energy + Delta-G solvation = -21752.314220 eV Core-core repulsion = 18569.226808 eV Total energy + Delta-G solvation = -3183.087411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.50033 -40.24397 -38.81812 -35.75803 -34.87078 -32.92915 -31.97766 -30.86696 -30.85716 -28.80488 -26.71456 -25.38179 -25.15622 -23.85572 -22.42116 -21.97732 -21.06134 -19.37010 -18.34980 -17.67610 -17.25390 -16.96855 -16.39937 -16.04632 -15.83904 -15.55913 -15.45328 -15.02385 -14.49440 -14.40448 -14.05382 -13.95003 -13.70747 -13.00835 -12.94646 -12.76926 -12.76015 -12.59145 -12.48652 -12.15861 -12.10834 -11.99904 -11.96869 -11.82809 -11.63815 -10.90081 -10.53293 -10.32451 -10.08187 -9.59709 -8.91053 -8.09613 -6.20758 -0.40936 0.27583 0.97135 1.25771 1.38693 1.42910 1.44828 1.54059 2.44057 2.70960 3.17858 3.19011 3.45837 3.56590 3.77801 3.92839 3.98885 4.16357 4.21557 4.35592 4.40465 4.50150 4.60046 4.62176 4.71688 4.78244 4.91921 4.97337 5.01701 5.05996 5.10547 5.27467 5.30624 5.34022 5.45186 5.51567 5.60437 5.73596 5.79871 5.93948 6.27459 6.40553 6.71900 6.92872 7.38147 7.47862 8.96353 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.032427 B = 0.003173 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.259006 B = 8822.503491 C = 9162.059483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.220 3.780 3 H -0.023 1.023 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.268 1.268 12 N -0.546 5.546 13 C 0.044 3.956 14 C 0.135 3.865 15 C -0.004 4.004 16 C -0.034 4.034 17 N -0.239 5.239 18 C 0.089 3.911 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.105 4.105 22 C -0.096 4.096 23 C -0.122 4.122 24 N -0.111 5.111 25 N -0.284 5.284 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.023 0.977 29 H 0.262 0.738 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.228 0.772 36 H 0.127 0.873 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.682 -2.639 23.618 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.114 3.886 3 H -0.006 1.006 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.271 5.271 13 C -0.105 4.105 14 C 0.006 3.994 15 C -0.142 4.142 16 C -0.183 4.183 17 N -0.027 5.027 18 C -0.002 4.002 19 C -0.142 4.142 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.142 4.142 24 N -0.088 5.088 25 N -0.150 5.150 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.145 0.855 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.407 -4.132 23.871 26.777 hybrid contribution 0.689 1.181 -1.550 2.066 sum 12.096 -2.951 22.322 25.559 Atomic orbital electron populations 1.21703 0.97603 0.98991 0.99885 1.19035 0.92417 0.90642 0.86536 1.00570 1.21408 1.31163 1.12209 0.90986 0.92542 1.25664 0.95393 0.95748 1.01728 1.70006 1.37706 1.24062 1.24059 0.85553 0.78785 0.78216 0.79042 1.20587 1.20689 1.19301 1.61950 1.10703 1.52988 1.01498 1.22164 0.87541 0.99429 1.01319 1.20300 1.01679 0.92383 0.85076 1.22014 0.94027 0.98391 0.99743 1.23947 1.03701 0.98184 0.92442 1.44865 1.15517 1.21744 1.20558 1.18186 0.91326 1.01086 0.89561 1.21137 1.01570 0.96427 0.95064 1.21441 0.93531 1.00342 0.96617 1.21818 0.96885 0.94181 0.99478 1.21486 0.99438 0.97684 0.92794 1.21274 0.91971 1.00060 1.00932 1.78235 0.95960 1.20436 1.14177 1.75025 1.25733 1.09678 1.04573 0.94891 0.91820 0.95733 0.92886 0.92275 0.92409 0.95685 0.90038 0.91898 0.75550 0.85540 0.82353 0.81730 0.81452 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.32 8.76 71.98 0.63 -5.69 16 2 C 0.22 11.38 2.06 44.17 0.09 11.48 16 3 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 4 C -0.52 -29.06 7.88 25.60 0.20 -28.86 16 5 H 0.06 3.17 6.40 -2.91 -0.02 3.15 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 N -0.55 -24.33 4.61 -906.00 -4.18 -28.51 16 13 C 0.04 1.71 9.05 127.69 1.16 2.87 16 14 C 0.14 5.09 5.34 85.56 0.46 5.55 16 15 C 0.00 -0.13 5.96 41.60 0.25 0.11 16 16 C -0.03 -0.93 9.88 83.37 0.82 -0.10 16 17 N -0.24 -6.85 3.56 -187.05 -0.67 -7.51 16 18 C 0.09 1.91 6.68 38.07 0.25 2.17 16 19 C -0.12 -2.34 9.62 22.38 0.22 -2.13 16 20 C -0.10 -1.18 10.04 22.25 0.22 -0.95 16 21 C -0.11 -0.84 10.04 22.29 0.22 -0.62 16 22 C -0.10 -0.85 10.04 22.25 0.22 -0.63 16 23 C -0.12 -1.76 9.46 22.38 0.21 -1.55 16 24 N -0.11 -3.95 12.42 37.02 0.46 -3.49 16 25 N -0.28 -11.37 12.39 -48.59 -0.60 -11.97 16 26 H 0.03 1.48 6.20 -2.39 -0.01 1.46 16 27 H 0.06 3.52 6.07 -2.38 -0.01 3.51 16 28 H 0.02 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.06 2.03 6.58 -2.38 -0.02 2.02 16 31 H 0.06 2.49 6.10 -2.39 -0.01 2.47 16 32 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.08 3.25 5.83 -2.39 -0.01 3.24 16 34 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.23 4.05 7.11 -2.91 -0.02 4.03 16 36 H 0.13 2.73 7.69 -2.91 -0.02 2.71 16 37 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 38 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 39 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 40 H 0.15 1.61 6.77 -2.91 -0.02 1.59 16 Total: -1.00 -72.02 329.06 3.74 -68.29 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.05 Total: 6.91 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 5.41 Total: -17.16 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.75 Total: -104.35 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.02 3.74 -68.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353403894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.604 kcal (2) G-P(sol) polarization free energy of solvation -72.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds