Wall clock time and date at job start Tue Mar 31 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 H 1.07994 * 120.00692 * 119.99605 * 4 2 1 6 6 C 1.37884 * 119.99565 * 300.00147 * 4 2 1 7 7 N 1.31515 * 119.99672 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00353 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47108 * 89.99960 * 8 6 4 10 10 H 1.48498 * 109.47372 * 210.00044 * 8 6 4 11 11 H 1.48502 * 109.47048 * 330.00329 * 8 6 4 12 12 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 13 13 C 1.46901 * 110.99788 * 183.95405 * 12 2 1 14 14 C 1.46901 * 110.99790 * 60.00351 * 12 2 1 15 15 C 1.50701 * 109.46921 * 189.99765 * 14 12 2 16 16 C 1.35371 * 126.72775 * 94.71393 * 15 14 12 17 17 N 1.36118 * 106.04957 * 179.85541 * 16 15 14 18 18 C 1.40249 * 125.94690 * 180.18300 * 17 16 15 19 19 C 1.38824 * 120.06177 * 0.02562 * 18 17 16 20 20 C 1.38119 * 119.93443 * 179.74519 * 19 18 17 21 21 C 1.38281 * 120.06241 * 0.55256 * 20 19 18 22 22 C 1.38271 * 120.13239 * 359.70017 * 21 20 19 23 23 C 1.38132 * 120.06282 * 0.02562 * 22 21 20 24 24 N 1.28732 * 108.11279 * 0.41363 * 17 16 15 25 25 N 1.28598 * 110.23340 * 359.73587 * 24 17 16 26 26 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 28 28 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 29 29 H 0.97002 * 119.99458 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47121 * 296.04690 * 13 12 2 31 31 H 1.09005 * 109.47342 * 56.04784 * 13 12 2 32 32 H 1.08999 * 109.46894 * 176.04703 * 13 12 2 33 33 H 1.09002 * 109.47401 * 69.99793 * 14 12 2 34 34 H 1.09001 * 109.46874 * 309.99805 * 14 12 2 35 35 H 1.08002 * 126.97658 * 359.95790 * 16 15 14 36 36 H 1.08005 * 120.03075 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.97363 * 180.27225 * 20 19 18 38 38 H 1.08001 * 119.93016 * 179.72172 * 21 20 19 39 39 H 1.07999 * 119.96966 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.02836 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2798 2.6542 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5488 -0.0263 -2.4211 15 6 1.8581 -0.8911 -3.6159 16 6 1.0279 -1.7819 -4.2072 17 7 1.7296 -2.3214 -5.2413 18 6 1.2599 -3.2932 -6.1368 19 6 -0.0302 -3.7900 -6.0100 20 6 -0.4919 -4.7431 -6.8966 21 6 0.3334 -5.2108 -7.9028 22 6 1.6205 -4.7216 -8.0284 23 6 2.0859 -3.7642 -7.1481 24 7 2.9012 -1.7881 -5.2513 25 7 3.0089 -0.9331 -4.2967 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.9033 -0.5278 4.4375 30 1 3.9193 0.2044 -1.2299 31 1 3.8070 -1.2915 -0.2718 32 1 3.8165 -1.3721 -2.0499 33 1 2.0520 0.9346 -2.5280 34 1 0.4723 0.1324 -2.3564 35 1 0.0139 -2.0158 -3.9182 36 1 -0.6737 -3.4283 -5.2216 37 1 -1.4969 -5.1269 -6.8013 38 1 -0.0284 -5.9593 -8.5922 39 1 2.2627 -5.0883 -8.8155 40 1 3.0912 -3.3822 -7.2470 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353403895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:49 Heat of formation + Delta-G solvation = 154.256202 kcal Electronic energy + Delta-G solvation = -21810.527947 eV Core-core repulsion = 18628.695408 eV Total energy + Delta-G solvation = -3181.832540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.37159 -39.58452 -37.31597 -34.72943 -32.91714 -31.85047 -31.15026 -30.16108 -29.80309 -27.26265 -24.68425 -24.45966 -23.92027 -22.88222 -21.47593 -20.70565 -19.46235 -18.48782 -16.81660 -16.57018 -16.48073 -15.50421 -15.47068 -15.06662 -14.52485 -14.31573 -14.00814 -13.87196 -13.63042 -13.27507 -12.87498 -12.60399 -12.24009 -12.19227 -11.80828 -11.78940 -11.44658 -11.12462 -11.05497 -10.84838 -10.65827 -10.54133 -10.40315 -10.11244 -9.54457 -9.49457 -9.21062 -8.99433 -8.78536 -8.55757 -7.36752 -6.06079 -4.04801 0.38894 0.85592 1.90588 2.20103 2.61482 3.26228 3.33165 3.36575 3.39024 4.16609 4.34159 4.39910 4.46575 4.63877 4.80162 4.86754 4.91335 5.10855 5.14110 5.21297 5.27056 5.37979 5.53681 5.74513 5.85117 5.96721 5.99848 6.09368 6.19727 6.24123 6.28026 6.36810 6.41212 6.51888 6.64201 6.76078 6.79655 7.00803 7.26908 7.57473 7.93303 8.06632 8.52771 8.65533 9.00974 9.55315 11.06689 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.003323 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.477409 B = 8423.368404 C = 8707.042945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H 0.000 1.000 4 C -0.505 4.505 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.523 5.523 13 C 0.037 3.963 14 C 0.127 3.873 15 C 0.013 3.987 16 C -0.036 4.036 17 N -0.252 5.252 18 C 0.133 3.867 19 C -0.120 4.120 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.100 4.100 23 C -0.106 4.106 24 N -0.087 5.087 25 N -0.251 5.251 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.015 0.985 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.193 0.807 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 -6.218 -23.031 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.018 0.982 4 C -0.543 4.543 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.193 1.193 12 N -0.247 5.247 13 C -0.111 4.111 14 C -0.003 4.003 15 C -0.123 4.123 16 C -0.183 4.183 17 N -0.040 5.040 18 C 0.042 3.958 19 C -0.141 4.141 20 C -0.117 4.117 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.126 4.126 24 N -0.065 5.065 25 N -0.119 5.119 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.210 0.790 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.430 -6.581 -23.457 24.961 hybrid contribution -1.380 1.444 0.781 2.144 sum -6.810 -5.138 -22.676 24.227 Atomic orbital electron populations 1.22242 0.98574 1.01389 0.98310 1.19709 0.91410 0.92815 0.88601 0.98204 1.20977 1.31916 1.13613 0.87823 0.89861 1.24924 0.95868 0.96607 0.95777 1.69882 1.45693 1.40319 0.97878 0.86882 0.80693 0.83849 0.76912 1.20531 1.22507 1.19336 1.61982 1.10813 1.51521 1.00429 1.22270 0.87205 0.99400 1.02203 1.20454 1.01175 0.92746 0.85974 1.22056 0.90270 1.00439 0.99546 1.23488 1.01966 1.00442 0.92434 1.44613 1.10659 1.27632 1.21080 1.17710 0.94512 0.91727 0.91899 1.20994 0.93566 0.98499 1.01040 1.21048 1.00331 0.96028 0.94260 1.21339 0.94046 0.99919 0.98364 1.21112 0.96115 0.96003 0.98674 1.21026 1.00416 0.97435 0.93686 1.78283 1.00903 1.08459 1.18806 1.75066 1.21728 1.12690 1.02411 0.91952 0.93911 0.95137 0.92616 0.96656 0.89967 0.93092 0.93640 0.88964 0.79032 0.84561 0.84614 0.85131 0.84706 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.47 37.16 0.31 -2.80 16 2 C 0.18 4.29 1.65 -68.86 -0.11 4.17 16 3 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 4 C -0.51 -14.10 8.46 -34.44 -0.29 -14.39 16 5 H 0.08 2.54 6.65 -52.49 -0.35 2.19 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.89 21.74 24.37 -169.99 -4.14 17.60 16 9 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 12 N -0.52 -11.07 4.61 -237.72 -1.10 -12.17 16 13 C 0.04 0.80 9.08 60.07 0.55 1.34 16 14 C 0.13 2.22 5.34 -4.97 -0.03 2.20 16 15 C 0.01 0.22 5.96 -82.77 -0.49 -0.28 16 16 C -0.04 -0.50 10.85 -16.67 -0.18 -0.68 16 17 N -0.25 -3.57 3.56 -10.47 -0.04 -3.61 16 18 C 0.13 1.49 6.68 -83.58 -0.56 0.94 16 19 C -0.12 -1.05 9.46 -39.41 -0.37 -1.42 16 20 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 21 C -0.12 -0.73 10.04 -39.55 -0.40 -1.12 16 22 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 23 C -0.11 -1.03 9.62 -39.41 -0.38 -1.41 16 24 N -0.09 -1.45 12.42 60.35 0.75 -0.70 16 25 N -0.25 -4.56 11.42 33.29 0.38 -4.18 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.04 0.94 3.27 -51.93 -0.17 0.77 16 28 H 0.03 0.53 6.20 -51.93 -0.32 0.21 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 1.91 6.10 -51.93 -0.32 1.59 16 32 H 0.05 1.04 6.55 -51.93 -0.34 0.70 16 33 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.09 1.43 5.83 -51.93 -0.30 1.13 16 35 H 0.19 2.00 7.11 -52.49 -0.37 1.62 16 36 H 0.14 0.99 6.77 -52.48 -0.36 0.63 16 37 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.14 1.42 7.69 -52.49 -0.40 1.01 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -32.99 322.24 -6.39 -39.37 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.02 Total: -0.85 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.85 Total: -13.71 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.77 Total: -47.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.60 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.99 -6.39 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353403895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.630 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds