Wall clock time and date at job start Tue Mar 31 2020 05:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 H 1.07994 * 120.00692 * 119.99605 * 4 2 1 6 6 C 1.37884 * 119.99565 * 300.00147 * 4 2 1 7 7 N 1.31515 * 119.99672 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00353 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47108 * 89.99960 * 8 6 4 10 10 H 1.48498 * 109.47372 * 210.00044 * 8 6 4 11 11 H 1.48502 * 109.47048 * 330.00329 * 8 6 4 12 12 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 13 13 C 1.46901 * 110.99788 * 183.95405 * 12 2 1 14 14 C 1.46901 * 110.99790 * 60.00351 * 12 2 1 15 15 C 1.50701 * 109.46921 * 189.99765 * 14 12 2 16 16 C 1.35371 * 126.72775 * 94.71393 * 15 14 12 17 17 N 1.36118 * 106.04957 * 179.85541 * 16 15 14 18 18 C 1.40249 * 125.94690 * 180.18300 * 17 16 15 19 19 C 1.38824 * 120.06177 * 0.02562 * 18 17 16 20 20 C 1.38119 * 119.93443 * 179.74519 * 19 18 17 21 21 C 1.38281 * 120.06241 * 0.55256 * 20 19 18 22 22 C 1.38271 * 120.13239 * 359.70017 * 21 20 19 23 23 C 1.38132 * 120.06282 * 0.02562 * 22 21 20 24 24 N 1.28732 * 108.11279 * 0.41363 * 17 16 15 25 25 N 1.28598 * 110.23340 * 359.73587 * 24 17 16 26 26 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 28 28 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 29 29 H 0.97002 * 119.99458 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47121 * 296.04690 * 13 12 2 31 31 H 1.09005 * 109.47342 * 56.04784 * 13 12 2 32 32 H 1.08999 * 109.46894 * 176.04703 * 13 12 2 33 33 H 1.09002 * 109.47401 * 69.99793 * 14 12 2 34 34 H 1.09001 * 109.46874 * 309.99805 * 14 12 2 35 35 H 1.08002 * 126.97658 * 359.95790 * 16 15 14 36 36 H 1.08005 * 120.03075 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.97363 * 180.27225 * 20 19 18 38 38 H 1.08001 * 119.93016 * 179.72172 * 21 20 19 39 39 H 1.07999 * 119.96966 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.02836 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2798 2.6542 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5488 -0.0263 -2.4211 15 6 1.8581 -0.8911 -3.6159 16 6 1.0279 -1.7819 -4.2072 17 7 1.7296 -2.3214 -5.2413 18 6 1.2599 -3.2932 -6.1368 19 6 -0.0302 -3.7900 -6.0100 20 6 -0.4919 -4.7431 -6.8966 21 6 0.3334 -5.2108 -7.9028 22 6 1.6205 -4.7216 -8.0284 23 6 2.0859 -3.7642 -7.1481 24 7 2.9012 -1.7881 -5.2513 25 7 3.0089 -0.9331 -4.2967 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.9033 -0.5278 4.4375 30 1 3.9193 0.2044 -1.2299 31 1 3.8070 -1.2915 -0.2718 32 1 3.8165 -1.3721 -2.0499 33 1 2.0520 0.9346 -2.5280 34 1 0.4723 0.1324 -2.3564 35 1 0.0139 -2.0158 -3.9182 36 1 -0.6737 -3.4283 -5.2216 37 1 -1.4969 -5.1269 -6.8013 38 1 -0.0284 -5.9593 -8.5922 39 1 2.2627 -5.0883 -8.8155 40 1 3.0912 -3.3822 -7.2470 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353403895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:48 Heat of formation + Delta-G solvation = 131.241996 kcal Electronic energy + Delta-G solvation = -21811.525918 eV Core-core repulsion = 18628.695408 eV Total energy + Delta-G solvation = -3182.830510 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.49209 -40.24335 -38.97598 -35.77234 -34.77348 -33.09550 -32.13322 -31.55203 -30.80513 -28.79842 -26.56489 -25.54432 -25.22411 -23.82908 -22.40831 -21.91008 -21.09392 -19.43040 -18.79609 -17.66157 -17.26102 -17.13095 -16.37438 -16.03745 -15.92626 -15.73389 -15.33358 -15.01919 -14.67670 -14.48490 -14.31166 -14.03377 -13.80323 -13.51359 -13.19289 -12.81004 -12.63640 -12.58939 -12.50395 -12.18272 -12.08766 -11.99199 -11.91776 -11.88562 -11.40671 -11.01351 -10.70516 -10.34609 -10.07351 -9.59892 -9.06689 -8.25591 -6.29467 -0.39277 0.28341 0.98925 1.26828 1.33214 1.36622 1.39688 1.49433 2.35008 2.71750 3.08132 3.13971 3.40963 3.53665 3.80563 3.87384 4.03536 4.17820 4.23693 4.34617 4.37770 4.42608 4.52150 4.58403 4.65083 4.68947 4.70947 4.87146 4.89456 4.97971 4.99497 5.10364 5.19416 5.31190 5.33014 5.45548 5.46825 5.61223 5.68071 5.94712 6.01117 6.27856 6.67406 6.77068 7.35083 7.36082 8.91004 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.003323 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.477409 B = 8423.368404 C = 8707.042945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.184 3.816 3 H -0.007 1.007 4 C -0.509 4.509 5 H 0.038 0.962 6 C 0.011 3.989 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.258 1.258 10 H -0.302 1.302 11 H -0.249 1.249 12 N -0.530 5.530 13 C 0.050 3.950 14 C 0.132 3.868 15 C -0.013 4.013 16 C -0.021 4.021 17 N -0.241 5.241 18 C 0.089 3.911 19 C -0.122 4.122 20 C -0.096 4.096 21 C -0.106 4.106 22 C -0.102 4.102 23 C -0.122 4.122 24 N -0.112 5.112 25 N -0.288 5.288 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.265 0.735 30 H 0.014 0.986 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.120 0.880 35 H 0.230 0.770 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 -6.465 -25.554 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.076 3.924 3 H 0.010 0.990 4 C -0.547 4.547 5 H 0.056 0.944 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.778 3.222 9 H -0.184 1.184 10 H -0.231 1.231 11 H -0.173 1.173 12 N -0.255 5.255 13 C -0.099 4.099 14 C 0.003 3.997 15 C -0.150 4.150 16 C -0.170 4.170 17 N -0.029 5.029 18 C -0.001 4.001 19 C -0.142 4.142 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.142 4.142 24 N -0.089 5.089 25 N -0.155 5.155 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.138 0.862 35 H 0.247 0.753 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.868 -6.845 -26.042 28.349 hybrid contribution -0.284 1.296 1.383 1.917 sum -9.152 -5.549 -24.658 26.881 Atomic orbital electron populations 1.22132 0.95827 1.02019 1.00072 1.19570 0.93450 0.91623 0.87714 0.98972 1.21228 1.30977 1.12371 0.90167 0.94370 1.25810 0.97492 1.00091 0.95210 1.70048 1.47846 1.42660 0.98585 0.85821 0.79474 0.79748 0.77143 1.18400 1.23059 1.17268 1.61898 1.10134 1.52125 1.01327 1.22060 0.88093 0.98980 1.00725 1.20476 1.02488 0.92372 0.84343 1.22028 0.90876 1.02030 1.00087 1.23989 1.02899 0.98760 0.91340 1.44847 1.09818 1.27188 1.21051 1.18164 0.96208 0.92896 0.92830 1.21291 0.92501 0.98601 1.01819 1.21487 1.01717 0.94891 0.93371 1.21812 0.93175 0.99342 0.98103 1.21436 0.97151 0.94984 0.98436 1.21131 1.00015 0.98581 0.94494 1.78199 1.02448 1.09153 1.19091 1.74993 1.23050 1.13985 1.03484 0.92007 0.94573 0.90780 0.92562 0.96733 0.93062 0.92558 0.93981 0.86174 0.75317 0.83132 0.81508 0.81796 0.82389 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 8.47 71.98 0.61 -4.98 16 2 C 0.18 8.54 1.65 44.17 0.07 8.61 16 3 H -0.01 -0.34 7.20 -2.39 -0.02 -0.36 16 4 C -0.51 -29.20 8.46 25.60 0.22 -28.99 16 5 H 0.04 2.47 6.65 -2.91 -0.02 2.46 16 6 C 0.01 0.63 5.45 84.66 0.46 1.09 16 7 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 8 Si 0.95 44.32 24.37 68.60 1.67 46.00 16 9 H -0.26 -11.17 6.87 99.48 0.68 -10.48 16 10 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 11 H -0.25 -10.72 6.53 99.48 0.65 -10.07 16 12 N -0.53 -22.32 4.61 -906.01 -4.18 -26.50 16 13 C 0.05 2.22 9.08 127.69 1.16 3.38 16 14 C 0.13 4.43 5.34 85.56 0.46 4.89 16 15 C -0.01 -0.42 5.96 41.60 0.25 -0.17 16 16 C -0.02 -0.56 10.85 83.37 0.90 0.34 16 17 N -0.24 -6.70 3.56 -187.05 -0.67 -7.36 16 18 C 0.09 1.90 6.68 38.07 0.25 2.16 16 19 C -0.12 -1.77 9.46 22.38 0.21 -1.55 16 20 C -0.10 -0.88 10.04 22.25 0.22 -0.66 16 21 C -0.11 -0.87 10.04 22.29 0.22 -0.65 16 22 C -0.10 -1.19 10.04 22.25 0.22 -0.96 16 23 C -0.12 -2.32 9.62 22.38 0.22 -2.10 16 24 N -0.11 -3.79 12.42 37.02 0.46 -3.33 16 25 N -0.29 -10.66 11.42 -48.59 -0.56 -11.22 16 26 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.04 1.46 3.27 -2.39 -0.01 1.45 16 28 H 0.07 2.24 6.20 -2.39 -0.01 2.22 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 2.54 6.10 -2.38 -0.01 2.53 16 32 H 0.06 2.41 6.55 -2.39 -0.02 2.39 16 33 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 34 H 0.12 3.27 5.83 -2.39 -0.01 3.26 16 35 H 0.23 3.92 7.11 -2.91 -0.02 3.90 16 36 H 0.15 1.64 6.77 -2.91 -0.02 1.62 16 37 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 38 H 0.16 0.29 8.06 -2.91 -0.02 0.26 16 39 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.13 2.67 7.69 -2.91 -0.02 2.65 16 Total: -1.00 -76.02 322.24 3.49 -72.53 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.97 Total: 9.04 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 5.48 Total: -19.60 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.64 Total: -107.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.67 Total: 46.00 kcal Total: -76.02 3.49 -72.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353403895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.773 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds