Wall clock time and date at job start Tue Mar 31 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00243 * 2 1 4 4 N 1.46898 * 109.46856 * 124.15816 * 3 2 1 5 5 C 1.46906 * 110.99985 * 301.36432 * 4 3 2 6 6 C 1.50700 * 109.47367 * 289.58657 * 5 4 3 7 7 H 1.08004 * 119.99908 * 355.28026 * 6 5 4 8 8 C 1.37874 * 119.99991 * 175.27515 * 6 5 4 9 9 N 1.31514 * 119.99945 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99996 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46805 * 60.00049 * 10 8 6 12 12 H 1.48497 * 109.47157 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47143 * 300.00061 * 10 8 6 14 14 C 1.46897 * 111.00296 * 65.32240 * 4 3 2 15 15 C 1.50704 * 109.47033 * 66.04671 * 14 4 3 16 16 C 1.38901 * 119.62347 * 269.72493 * 15 14 4 17 17 C 1.36665 * 120.58191 * 180.26116 * 16 15 14 18 18 C 1.39079 * 119.80608 * 0.03603 * 17 16 15 19 19 C 1.40567 * 119.89362 * 359.96042 * 18 17 16 20 20 C 1.36415 * 119.62419 * 90.00112 * 15 14 4 21 21 N 1.34787 * 107.67208 * 180.02562 * 19 18 17 22 22 N 1.28642 * 110.32003 * 0.02562 * 21 19 18 23 23 N 1.37460 * 134.01029 * 180.02562 * 18 17 16 24 24 C 1.46492 * 126.75793 * 359.95425 * 23 18 17 25 25 H 1.08002 * 120.00122 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00444 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99532 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46892 * 4.15374 * 3 2 1 29 29 H 1.09000 * 109.47220 * 244.15162 * 3 2 1 30 30 H 1.09001 * 109.46418 * 49.58536 * 5 4 3 31 31 H 1.08997 * 109.46870 * 169.58116 * 5 4 3 32 32 H 0.97006 * 119.99827 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47228 * 306.04292 * 14 4 3 34 34 H 1.09007 * 109.47022 * 186.04487 * 14 4 3 35 35 H 1.08005 * 119.70495 * 0.27810 * 16 15 14 36 36 H 1.07993 * 120.09613 * 179.97438 * 17 16 15 37 37 H 1.08007 * 120.09762 * 359.73708 * 20 15 14 38 38 H 1.08996 * 109.47294 * 270.01911 * 24 23 18 39 39 H 1.09001 * 109.47593 * 30.02412 * 24 23 18 40 40 H 1.09009 * 109.47371 * 150.02464 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9818 1.3402 1.1461 5 6 2.2508 1.1877 2.4112 6 6 1.4453 2.4329 2.6792 7 1 1.5321 3.2843 2.0205 8 6 0.5976 2.4850 3.7653 9 7 0.4923 1.4483 4.5676 10 14 -0.4014 4.0282 4.0971 11 1 -1.2870 4.3034 2.9372 12 1 -1.2284 3.8302 5.3146 13 1 0.5163 5.1773 4.3030 14 6 4.0267 0.3161 1.0151 15 6 4.9089 0.6462 -0.1614 16 6 4.5920 0.1475 -1.4184 17 6 5.3812 0.4302 -2.4978 18 6 6.5125 1.2232 -2.3383 19 6 6.8387 1.7311 -1.0688 20 6 6.0127 1.4266 0.0215 21 7 7.9670 2.4574 -1.1962 22 7 8.3685 2.4482 -2.4183 23 7 7.4864 1.6809 -3.1936 24 6 7.5839 1.4189 -4.6316 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3576 2.1322 0.0744 29 1 2.6332 1.3957 -0.9248 30 1 1.5818 0.3298 2.3431 31 1 2.9601 1.0317 3.2240 32 1 -0.1039 1.4851 5.3320 33 1 3.5633 -0.6581 0.8597 34 1 4.6276 0.2917 1.9243 35 1 3.7140 -0.4688 -1.5440 36 1 5.1277 0.0380 -3.4715 37 1 6.2493 1.8086 1.0037 38 1 8.1698 0.5149 -4.7973 39 1 6.5844 1.2851 -5.0452 40 1 8.0704 2.2620 -5.1224 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428851278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:15 Heat of formation + Delta-G solvation = 143.637361 kcal Electronic energy + Delta-G solvation = -21998.732329 eV Core-core repulsion = 18816.439322 eV Total energy + Delta-G solvation = -3182.293007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04365 -38.63574 -36.57797 -34.75020 -32.81231 -32.44840 -30.73470 -30.39011 -27.82014 -27.09968 -26.08898 -24.30706 -23.30995 -21.61620 -21.18362 -20.84352 -18.91934 -17.47142 -17.17196 -16.22272 -16.14996 -15.66935 -15.02422 -14.59999 -14.33420 -14.21853 -14.09452 -13.74914 -13.61699 -13.27113 -12.91553 -12.38583 -12.16045 -11.89585 -11.83153 -11.55361 -11.36707 -11.10186 -10.94501 -10.76908 -10.74632 -10.61098 -10.53133 -10.43147 -9.91849 -9.25699 -8.84475 -8.65358 -8.39379 -8.19562 -7.25097 -5.99685 -4.00323 0.50587 1.36926 2.03175 2.24893 2.87206 3.34946 3.39225 3.42373 3.67495 4.09440 4.26269 4.45400 4.62186 4.78446 4.81301 4.99840 5.05587 5.22190 5.25447 5.30920 5.36054 5.47738 5.53417 5.68613 5.86135 5.93762 6.04287 6.08716 6.20757 6.27573 6.40620 6.51975 6.62494 6.72266 6.77885 7.13878 7.24647 7.32921 7.43418 7.82638 8.02753 8.08517 8.18706 8.54859 9.07052 9.63465 11.10807 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.003822 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.648817 B = 7323.488906 C = 7878.379898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.183 4.183 3 C 0.087 3.913 4 N -0.524 5.524 5 C 0.191 3.809 6 C -0.502 4.502 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.088 3.912 15 C -0.078 4.078 16 C -0.051 4.051 17 C -0.132 4.132 18 C 0.083 3.917 19 C -0.015 4.015 20 C -0.016 4.016 21 N -0.217 5.217 22 N -0.023 5.023 23 N -0.404 5.404 24 C 0.103 3.897 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.007 0.993 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.912 -5.299 -17.220 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.203 4.203 3 C -0.041 4.041 4 N -0.246 5.246 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.040 4.040 15 C -0.082 4.082 16 C -0.073 4.073 17 C -0.154 4.154 18 C -0.038 4.038 19 C -0.139 4.139 20 C -0.039 4.039 21 N -0.095 5.095 22 N -0.002 5.002 23 N -0.200 5.200 24 C -0.039 4.039 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.024 0.976 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.376 -4.026 -17.131 20.429 hybrid contribution -1.898 -0.660 0.061 2.011 sum 8.478 -4.686 -17.069 19.627 Atomic orbital electron populations 1.23700 0.96086 1.01131 1.00437 1.23518 0.96709 0.99678 1.00355 1.21295 0.94641 0.94408 0.93727 1.62477 1.13032 1.44848 1.04260 1.19791 0.92349 0.97094 0.84173 1.21072 1.22835 0.99848 1.10344 0.92075 1.24943 0.97041 0.96270 0.96169 1.69943 1.38471 1.29641 1.15790 0.86621 0.80079 0.83599 0.77471 1.20362 1.21450 1.20191 1.21057 0.93654 0.94338 0.94934 1.19537 0.95401 0.97800 0.95440 1.20877 0.97795 0.97150 0.91492 1.19692 0.93825 1.01749 1.00160 1.19357 0.93487 1.00156 0.90794 1.19804 0.96544 1.03298 0.94283 1.20115 0.91722 0.94801 0.97276 1.74535 1.09933 1.15086 1.09990 1.81593 1.12207 1.10163 0.96258 1.50052 1.20125 1.40655 1.09129 1.21906 1.04154 1.03235 0.74564 0.88495 0.89728 0.88653 0.89867 0.91901 0.97552 0.95757 0.92975 0.94228 0.90112 0.84704 0.85460 0.84158 0.90345 0.89240 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 14.32 29.02 0.42 -2.53 16 2 C -0.18 -3.06 7.38 -36.03 -0.27 -3.33 16 3 C 0.09 1.57 5.32 -4.98 -0.03 1.55 16 4 N -0.52 -10.48 4.66 -238.96 -1.11 -11.59 16 5 C 0.19 4.70 4.56 -4.97 -0.02 4.68 16 6 C -0.50 -13.70 8.51 -34.44 -0.29 -13.99 16 7 H 0.06 1.67 7.56 -52.48 -0.40 1.28 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 10 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.09 1.44 4.94 -4.98 -0.02 1.41 16 15 C -0.08 -1.11 4.85 -105.03 -0.51 -1.62 16 16 C -0.05 -0.61 7.81 -39.90 -0.31 -0.92 16 17 C -0.13 -1.45 10.01 -39.84 -0.40 -1.85 16 18 C 0.08 1.10 6.94 -84.15 -0.58 0.51 16 19 C -0.01 -0.23 7.26 -84.98 -0.62 -0.85 16 20 C -0.02 -0.25 9.67 -39.53 -0.38 -0.63 16 21 N -0.22 -3.58 12.36 32.07 0.40 -3.18 16 22 N -0.02 -0.34 13.73 60.35 0.83 0.49 16 23 N -0.40 -4.87 4.12 -65.49 -0.27 -5.14 16 24 C 0.10 0.66 11.54 59.84 0.69 1.35 16 25 H 0.10 1.69 7.84 -52.49 -0.41 1.28 16 26 H 0.08 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.10 1.45 6.84 -52.49 -0.36 1.09 16 28 H 0.08 1.68 6.95 -51.93 -0.36 1.32 16 29 H 0.06 1.00 5.79 -51.93 -0.30 0.69 16 30 H 0.01 0.17 6.70 -51.93 -0.35 -0.17 16 31 H 0.02 0.65 7.84 -51.93 -0.41 0.24 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.04 0.61 6.33 -51.93 -0.33 0.28 16 34 H 0.08 1.33 7.81 -51.92 -0.41 0.92 16 35 H 0.14 1.40 7.93 -52.48 -0.42 0.98 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.14 2.07 8.06 -52.48 -0.42 1.65 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -31.85 336.08 -7.21 -39.06 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.41 Total: -0.96 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.43 Total: -14.72 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.58 Total: -44.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.85 -7.21 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428851278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.700 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds