Wall clock time and date at job start Tue Mar 31 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00243 * 2 1 4 4 N 1.46898 * 109.46856 * 124.15816 * 3 2 1 5 5 C 1.46906 * 110.99985 * 301.36432 * 4 3 2 6 6 C 1.50700 * 109.47367 * 289.58657 * 5 4 3 7 7 H 1.08004 * 119.99908 * 355.28026 * 6 5 4 8 8 C 1.37874 * 119.99991 * 175.27515 * 6 5 4 9 9 N 1.31514 * 119.99945 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99996 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46805 * 60.00049 * 10 8 6 12 12 H 1.48497 * 109.47157 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47143 * 300.00061 * 10 8 6 14 14 C 1.46897 * 111.00296 * 65.32240 * 4 3 2 15 15 C 1.50704 * 109.47033 * 66.04671 * 14 4 3 16 16 C 1.38901 * 119.62347 * 269.72493 * 15 14 4 17 17 C 1.36665 * 120.58191 * 180.26116 * 16 15 14 18 18 C 1.39079 * 119.80608 * 0.03603 * 17 16 15 19 19 C 1.40567 * 119.89362 * 359.96042 * 18 17 16 20 20 C 1.36415 * 119.62419 * 90.00112 * 15 14 4 21 21 N 1.34787 * 107.67208 * 180.02562 * 19 18 17 22 22 N 1.28642 * 110.32003 * 0.02562 * 21 19 18 23 23 N 1.37460 * 134.01029 * 180.02562 * 18 17 16 24 24 C 1.46492 * 126.75793 * 359.95425 * 23 18 17 25 25 H 1.08002 * 120.00122 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00444 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99532 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46892 * 4.15374 * 3 2 1 29 29 H 1.09000 * 109.47220 * 244.15162 * 3 2 1 30 30 H 1.09001 * 109.46418 * 49.58536 * 5 4 3 31 31 H 1.08997 * 109.46870 * 169.58116 * 5 4 3 32 32 H 0.97006 * 119.99827 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47228 * 306.04292 * 14 4 3 34 34 H 1.09007 * 109.47022 * 186.04487 * 14 4 3 35 35 H 1.08005 * 119.70495 * 0.27810 * 16 15 14 36 36 H 1.07993 * 120.09613 * 179.97438 * 17 16 15 37 37 H 1.08007 * 120.09762 * 359.73708 * 20 15 14 38 38 H 1.08996 * 109.47294 * 270.01911 * 24 23 18 39 39 H 1.09001 * 109.47593 * 30.02412 * 24 23 18 40 40 H 1.09009 * 109.47371 * 150.02464 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9818 1.3402 1.1461 5 6 2.2508 1.1877 2.4112 6 6 1.4453 2.4329 2.6792 7 1 1.5321 3.2843 2.0205 8 6 0.5976 2.4850 3.7653 9 7 0.4923 1.4483 4.5676 10 14 -0.4014 4.0282 4.0971 11 1 -1.2870 4.3034 2.9372 12 1 -1.2284 3.8302 5.3146 13 1 0.5163 5.1773 4.3030 14 6 4.0267 0.3161 1.0151 15 6 4.9089 0.6462 -0.1614 16 6 4.5920 0.1475 -1.4184 17 6 5.3812 0.4302 -2.4978 18 6 6.5125 1.2232 -2.3383 19 6 6.8387 1.7311 -1.0688 20 6 6.0127 1.4266 0.0215 21 7 7.9670 2.4574 -1.1962 22 7 8.3685 2.4482 -2.4183 23 7 7.4864 1.6809 -3.1936 24 6 7.5839 1.4189 -4.6316 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3576 2.1322 0.0744 29 1 2.6332 1.3957 -0.9248 30 1 1.5818 0.3298 2.3431 31 1 2.9601 1.0317 3.2240 32 1 -0.1039 1.4851 5.3320 33 1 3.5633 -0.6581 0.8597 34 1 4.6276 0.2917 1.9243 35 1 3.7140 -0.4688 -1.5440 36 1 5.1277 0.0380 -3.4715 37 1 6.2493 1.8086 1.0037 38 1 8.1698 0.5149 -4.7973 39 1 6.5844 1.2851 -5.0452 40 1 8.0704 2.2620 -5.1224 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428851278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:14 Heat of formation + Delta-G solvation = 122.597281 kcal Electronic energy + Delta-G solvation = -21999.644695 eV Core-core repulsion = 18816.439322 eV Total energy + Delta-G solvation = -3183.205373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.06743 -39.89480 -37.90569 -35.65750 -34.78029 -33.83345 -31.93998 -31.49693 -29.10082 -28.42624 -27.39872 -25.83094 -24.51363 -23.02588 -22.27578 -22.12032 -20.31746 -18.52516 -18.26894 -18.07661 -17.13415 -17.01844 -16.56825 -16.10735 -15.82358 -15.41814 -15.16960 -14.97851 -14.44051 -14.34403 -14.01611 -13.86193 -13.49840 -13.22418 -13.11514 -12.85546 -12.71694 -12.66285 -12.50354 -12.37990 -12.17896 -12.07780 -11.90703 -11.64383 -11.56543 -11.22063 -10.54482 -10.12609 -9.77482 -9.22015 -8.85539 -8.12929 -6.20964 -0.51067 0.32077 1.20775 1.21354 1.42477 1.44585 1.52064 1.54201 2.43351 2.61574 3.08234 3.19801 3.50937 3.58145 3.66849 3.88217 4.10772 4.16392 4.22210 4.31312 4.38911 4.46440 4.51604 4.63706 4.65910 4.77531 4.85878 4.94891 5.05843 5.06181 5.17585 5.26146 5.30646 5.44418 5.57865 5.63401 5.71218 5.79749 5.81986 6.00008 6.17089 6.45475 6.71072 6.95190 6.97176 7.47623 8.96586 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.003822 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.648817 B = 7323.488906 C = 7878.379898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.184 4.184 3 C 0.091 3.909 4 N -0.535 5.535 5 C 0.208 3.792 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.956 3.044 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.092 3.908 15 C -0.076 4.076 16 C -0.054 4.054 17 C -0.109 4.109 18 C 0.077 3.923 19 C -0.037 4.037 20 C -0.038 4.038 21 N -0.257 5.257 22 N -0.041 5.041 23 N -0.389 5.389 24 C 0.087 3.913 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.055 0.945 29 H 0.090 0.910 30 H -0.012 1.012 31 H -0.004 1.004 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -6.143 -20.181 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.204 4.204 3 C -0.037 4.037 4 N -0.258 5.258 5 C 0.082 3.918 6 C -0.552 4.552 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.782 3.218 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.199 1.199 14 C -0.036 4.036 15 C -0.080 4.080 16 C -0.076 4.076 17 C -0.130 4.130 18 C -0.045 4.045 19 C -0.163 4.163 20 C -0.061 4.061 21 N -0.134 5.134 22 N -0.020 5.020 23 N -0.185 5.185 24 C -0.052 4.052 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.135 0.865 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.006 0.994 31 H 0.014 0.986 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.177 0.823 36 H 0.190 0.810 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.860 -4.860 -20.137 22.942 hybrid contribution -1.658 -0.431 0.854 1.915 sum 8.201 -5.292 -19.282 21.612 Atomic orbital electron populations 1.23835 0.96362 1.01518 1.00320 1.23554 0.96742 0.99721 1.00365 1.21247 0.94284 0.94355 0.93795 1.62308 1.13515 1.46896 1.03072 1.19386 0.91291 0.95352 0.85779 1.21373 1.23108 1.00539 1.10220 0.92702 1.25729 0.98170 0.99167 0.95993 1.70058 1.39318 1.31537 1.16308 0.85635 0.78675 0.79920 0.77589 1.19348 1.21000 1.19900 1.21022 0.92757 0.94020 0.95788 1.19350 0.94647 0.98183 0.95787 1.21081 0.98830 0.97283 0.90443 1.20106 0.91731 0.99476 1.01706 1.19667 0.94358 1.00389 0.90098 1.20015 0.96689 1.03999 0.95589 1.20051 0.92831 0.96190 0.97031 1.74502 1.11126 1.16738 1.11011 1.81478 1.13185 1.11119 0.96265 1.50474 1.18666 1.38715 1.10688 1.22470 1.06610 1.04766 0.71367 0.89895 0.87699 0.86470 0.92625 0.89179 0.99378 0.98565 0.92926 0.92697 0.91289 0.82268 0.80952 0.85637 0.88196 0.86351 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 14.32 67.78 0.97 -4.91 16 2 C -0.18 -5.85 7.38 25.65 0.19 -5.66 16 3 C 0.09 3.19 5.32 85.56 0.46 3.64 16 4 N -0.54 -21.61 4.66 -909.93 -4.24 -25.85 16 5 C 0.21 10.55 4.56 85.56 0.39 10.94 16 6 C -0.51 -28.62 8.51 25.60 0.22 -28.40 16 7 H 0.05 3.06 7.56 -2.91 -0.02 3.04 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 10 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.09 2.97 4.94 85.56 0.42 3.40 16 15 C -0.08 -2.09 4.85 -20.13 -0.10 -2.19 16 16 C -0.05 -1.12 7.81 22.06 0.17 -0.94 16 17 C -0.11 -1.92 10.01 22.10 0.22 -1.69 16 18 C 0.08 1.85 6.94 39.03 0.27 2.12 16 19 C -0.04 -1.16 7.26 39.72 0.29 -0.87 16 20 C -0.04 -1.17 9.67 22.30 0.22 -0.96 16 21 N -0.26 -8.63 12.36 -52.44 -0.65 -9.28 16 22 N -0.04 -1.20 13.73 37.02 0.51 -0.70 16 23 N -0.39 -8.42 4.12 -361.11 -1.49 -9.91 16 24 C 0.09 0.77 11.54 127.77 1.47 2.24 16 25 H 0.08 2.88 7.84 -2.91 -0.02 2.86 16 26 H 0.10 2.92 8.06 -2.91 -0.02 2.90 16 27 H 0.12 3.21 6.84 -2.91 -0.02 3.19 16 28 H 0.06 2.25 6.95 -2.39 -0.02 2.23 16 29 H 0.09 2.65 5.79 -2.39 -0.01 2.63 16 30 H -0.01 -0.62 6.70 -2.39 -0.02 -0.64 16 31 H 0.00 -0.21 7.84 -2.39 -0.02 -0.23 16 32 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 33 H 0.06 1.61 6.33 -2.39 -0.02 1.60 16 34 H 0.07 2.36 7.81 -2.38 -0.02 2.34 16 35 H 0.16 2.53 7.93 -2.91 -0.02 2.50 16 36 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -71.53 336.08 3.13 -68.40 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.03 Total: 8.28 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 5.65 Total: -22.40 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -5.58 Total: -100.70 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -71.53 3.13 -68.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428851278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.993 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds